CaTMS857, CaTMS857 (genetic_marker) Cicer sp. | PulseDB

Marker Overview

Marker Overview


Name	CaTMS857
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(ATT)5
Primer 1	CaTMS857.Forward primer: TCCCAACCTCTTTTCCCTTT
Primer 2	CaTMS857.Reverse primer: AAACGGTGTTGACCATAGGAA
Product Length	135
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca8	chromosome	Ca8:16059680..16059816 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr8	chromosome	chr8:16059680..16059816 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2015	Khajuria YP, Saxena MS, Gaur R, Chattopadhyay D, Jain M, Parida SK, Bhatia S. Development and Integration of Genome-Wide Polymorphic Microsatellite Markers onto a Reference Linkage Map for Constructing a High-Density Genetic Map of Chickpea. PloS one. 2015; 10(5):e0125583.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	chickpea-ICC4958xPI489777-RIL-2015	LG4	N/A	46.6	CaTMS857	View
2	chickpea-ICC4958xPI489777-RIL-2015-2	LG7	N/A	96.55	CaTMS857	View
3	Chickpea-ICC4958/PI489777-RIL-2020	LG07	N/A	107.25	CaTMS857	View