H3F08, H3F08 (genetic_marker) Cicer arietinum | PulseDB

Marker Overview

Marker Overview


Name	H3F08
Genbank ID	N/A
Type	SSR
Species	Cicer arietinum
Germplasm	Hadas
Repeat Motif	(TTA)34
Primer 1	H3F08.Forward primer: AAACACCCGTGATTCTCTAAAGTT
Primer 2	H3F08.Reverse primer: TGACACCTAATTTTATTCGGTTTTT
Product Length	246
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold87	supercontig	scaffold87:576320..576517 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
scaffold87	chromosome	scaffold87:576320..576517 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2005	Lichtenzveig J, Scheuring C, Dodge J, Abbo S, Zhang HB. Construction of BAC and BIBAC libraries and their applications for generation of SSR markers for genome analysis of chickpea, Cicer arietinum L. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2005 Feb; 110(3):492-510.

Germplasm


Stock Name	Type
Hadas	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	chickpea-ICCV96029xCDCFrontier-F2	LG3	N/A	138	H3F08	View
2	chickpea-ILC588xILC3279-RIL	LG3	N/A	89.3	H3F08	View
3	chickpea-ICCV96029xCDCFrontier-F2-2007	LG3	N/A	138	H3F08	View
4	chickpea-ILC588xILC3279-RIL-F6	LG3	N/A	0.5	H3F08	View
5	chickpea-ICCV96029×CDCFrontier-F2-2017	CaLG03	N/A	4.8	H3F08	View
6	chickpea-ICC5810×CDCFrontier-F2-2017	CaLG03	N/A	0.9	H3F08	View
7	chickpea-BGD132×CDCFrontier-F2-2017	CaLG03	N/A	4.4	H3F08	View
8	chickpea-ICC16641×CDCFrontier-F2-2017	CaLG03	N/A	5.2	H3F08	View
9	chickpea-flowering_time_consensus_map-F2-2017	CaLG03	N/A	14.2	H3F08	View
10	Chickpea-ICC4958× ICC1882-RIL	CaLG03	N/A	59.88	H3F08	View