NCPGR5, NCPGR5 (genetic_marker) Cicer arietinum | PulseDB

Marker Overview

Marker Overview


Name	NCPGR5
Genbank ID	AY255880
Type	STMS
Species	Cicer arietinum
Germplasm	Pusa362
Repeat Motif	(GA)12(GA)3(GA)4
Primer 1	NCPGR5.Forward primer: GACAATAATGGTGAACGA
Primer 2	NCPGR5.Reverse primer: GGCACAATGTATGTATTG
Product Length	308
Publication	[view all]

References

External references for this genetic_marker


Database	Accession
DB:genbank	AY255880

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca6	chromosome	Ca6:45528864..45529182 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr6	chromosome	chr6:45528864..45529182 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2003	Sethy NK, Shokeen B, Bhatia S. Isolation and characterization of sequence-tagged microsatellite markers in chickpea (Cicer arietinum L.). Molecular Ecology Notes. 2003; 3:428-430.

Germplasm


Stock Name	Type
Pusa362	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	chickpea-ICC4958xPI489777-RIL-2012	LG5	N/A	195.7	NCPGR5	View
2	chickpea-ICC4958xPI489777-RIL-2012-2	LG5	N/A	58.2	NCPGR5	View
3	chickpea-ICC4958xPI489777-RIL-2015-2	LG5	N/A	52.91	NCPGR5	View
4	Chickpea-ICC4958/PI489777-RIL-2020	LG05	N/A	169.12	NCPGR5	View