Cc_v2.0_00117.1

Transcript Overview
NameCc_v2.0_00117.1
Unique NamedrCajCajn.Asha.2.0.Cc_v2.0_00117.1
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length366
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CcLG01_v2.0chromosomeCcLG01_v2.0:1162164..1164123 +Cajanus cajan cv. Asha genome v2.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anccaL0191Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0277Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0321Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0693Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ccapvR001Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavrvR026Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccapvR032Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavrvR063Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccccaL0000Cajanus cajan Asha genome v1.0Cajanus cajan
ccavuR002Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavuR023Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccccaL0274Cajanus cajan Asha genome v1.0Cajanus cajan
ccccaL0514Cajanus cajan Asha genome v1.0Cajanus cajan
ccavunR002Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigun01g244300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun01g244300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.001G258600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_014635188.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_32993Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-KK1_002802Cajanus cajan Asha genome v1.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cc_v2.0_00117drCajCajn.Asha.2.0.Cc_v2.0_00117Cajanus cajangene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.Cc_v2.0_00117.1drCajCajn.Asha.2.0.cds.Cc_v2.0_00117.1Cajanus cajanCDS
cds.Cc_v2.0_00117.1drCajCajn.Asha.2.0.cds.Cc_v2.0_00117.1_2Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_00117.1.exon1drCajCajn.Asha.2.0.Cc_v2.0_00117.1.exon1Cajanus cajanexon
Cc_v2.0_00117.1.exon2drCajCajn.Asha.2.0.Cc_v2.0_00117.1.exon2Cajanus cajanexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drCajCajn.Asha.2.0.Cc_v2.0_00117.1drCajCajn.Asha.2.0.Cc_v2.0_00117.1Cajanus cajanpolypeptide
drCajCajn.Asha.2.0.Cc_v2.0_00117.1drCajCajn.Asha.2.0.Cc_v2.0_00117.1-proteinCajanus cajanpolypeptide


Homology
[Close]
BLAST of Cc_v2.0_00117.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SP79|A0A151SP79_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_002802 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.045e-31
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 
Query:   66 MDSGMSWADQWDNNPDPEPASEKDKKKGKDGSSKSKFGKTVLSFKWVKELRKKNNK 121
            MDSGMSWADQWDNNPDPEPASEKDKKKGKDGSSKSKFGKTVLSFKWVKELRKKNNK
Sbjct:    1 MDSGMSWADQWDNNPDPEPASEKDKKKGKDGSSKSKFGKTVLSFKWVKELRKKNNK 56
[Close]
BLAST of Cc_v2.0_00117.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445HHY3|A0A445HHY3_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_037134 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.573e-22
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0 
Query:   66 MDSGMSWADQWDNNPDPEPASEKDKKKGKDGSSK-SKFGKTVLSFKWVKELRKKNNK 121
            MDSGMSWADQWDNNPDP PAS+KD KKGKDGS K +KFGKT+LSFKWVKELRKK  K
Sbjct:    1 MDSGMSWADQWDNNPDPSPASDKD-KKGKDGSGKNNKFGKTMLSFKWVKELRKKTQK 56
[Close]
BLAST of Cc_v2.0_00117.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1LNC3|I1LNC3_SOYBN (RIN4 pathogenic type III effector avirulence factor Avr cleavage site domain-containing protein OS=Glycine max OX=3847 GN=100810368 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.573e-22
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0 
Query:   66 MDSGMSWADQWDNNPDPEPASEKDKKKGKDGSSK-SKFGKTVLSFKWVKELRKKNNK 121
            MDSGMSWADQWDNNPDP PAS+KD KKGKDGS K +KFGKT+LSFKWVKELRKK  K
Sbjct:    1 MDSGMSWADQWDNNPDPSPASDKD-KKGKDGSGKNNKFGKTMLSFKWVKELRKKTQK 56
[Close]
BLAST of Cc_v2.0_00117.1 vs. ExPASy TrEMBL (2024)
Match: tr|G7J2I0|G7J2I0_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11441069 PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.638e-18
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 0 
Query:   66 MDSGMSWADQWDNNPDP-EPASEKDKKKGKDGSSKSKFGKTVLSFKWVKELRKKNNK 121
            MDSG+SWADQWDNNPDP +P SEK+KKK KD S  SK GK+VLS KW+KELRKK  K
Sbjct:    1 MDSGLSWADQWDNNPDPFDPVSEKNKKKSKDESKVSKIGKSVLSLKWMKELRKKTQK 57
[Close]
BLAST of Cc_v2.0_00117.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A5N5HHA8|A0A5N5HHA8_9ROSA (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_016520 PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.978e-18
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 0 
Query:   66 MDSGMSWADQWDNNPDPEP--ASEKDKKKGKDGSSKSKFGKTVLSFKWVKELRKKNNK 121
            MDSG+SWADQWDNNPDP P  +S+KD KKGKDGS +S FGK VLSFKWV+++RKK  K
Sbjct:    1 MDSGLSWADQWDNNPDPPPLGSSDKDNKKGKDGSKRS-FGKAVLSFKWVEKIRKKTQK 57
[Close]
BLAST of Cc_v2.0_00117.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SPM7|A0A151SPM7_CAJCA (Enzymatic polyprotein OS=Cajanus cajan OX=3821 GN=KK1_002965 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.813e-18
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 
Query:    1 MVELASAYSQKEFEARLQLIRAEQDDTQPEETSSSDSISTSPYLRNEDI 49
            M ELASA SQ+EFEARLQLIRAEQDDTQPEET SSDSISTSPYLRNED+
Sbjct:  767 MAELASACSQEEFEARLQLIRAEQDDTQPEETGSSDSISTSPYLRNEDM 815
[Close]
BLAST of Cc_v2.0_00117.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151S3Q1|A0A151S3Q1_CAJCA (Polyprotein OS=Cajanus cajan OX=3821 GN=KK1_028871 PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.398e-18
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0 
Query:    1 MVELASAYSQKEFEARLQLIRAEQDDTQPEETSSSDSISTSPYLRNEDI 49
            M ELASA SQ+EFEARLQLIRAEQDDTQPEET SSDSIST PYLRNED+
Sbjct:  187 MAELASASSQEEFEARLQLIRAEQDDTQPEETGSSDSISTIPYLRNEDM 235
[Close]
BLAST of Cc_v2.0_00117.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151RCT8|A0A151RCT8_CAJCA (Polyprotein OS=Cajanus cajan OX=3821 GN=KK1_038333 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.606e-17
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 0 
Query:    1 MVELASAYSQKEFEARLQLIRAEQDDTQPEETSSSDSISTSPYLRNEDI 49
            M ELASA SQ+EFEARLQLIRA QDD+QPEET SSDSISTSPYLRNED+
Sbjct:  187 MAELASATSQEEFEARLQLIRALQDDSQPEETGSSDSISTSPYLRNEDM 235
[Close]
BLAST of Cc_v2.0_00117.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3TA86|A0A1S3TA86_VIGRR (Uncharacterized protein LOC106753386 OS=Vigna radiata var. radiata OX=3916 GN=LOC106753386 PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.570e-17
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0 
Query:   66 MDSGMSWADQWDNNPDPEPASEKDKKKGKDGSSKSKFGKTVLSFKWVKELRKKNNK 121
            MDSGMSWADQWDNNPDP P  EKDKKK KD S KSKFGKTV++FKWVKELRKK  K
Sbjct:    1 MDSGMSWADQWDNNPDPSPTLEKDKKKSKDESGKSKFGKTVMNFKWVKELRKKTTK 56
[Close]
BLAST of Cc_v2.0_00117.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7D2H9|V7D2H9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G258600g PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.012e-16
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0 
Query:   66 MDSGMSWADQWDNNPDPEPASEKDKKKGKDGSSKSKFGKTVLSFKWVKELRKK 118
            MDSGMSWADQWDNNPDP P S KDKKK KD + K+KFGKTV++FKWVKELRKK
Sbjct:    1 MDSGMSWADQWDNNPDPSPTSNKDKKKNKDEAGKNKFGKTVMNFKWVKELRKK 53
[Close]
BLAST of Cc_v2.0_00117.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:25365473-25365667 FORWARD LENGTH=64)

HSP 1 Score: 61.2326 bits (147), Expect = 1.568e-13
Identity = 40/65 (61.54%), Postives = 46/65 (70.77%), Query Frame = 0 
Query:   66 MDSGMSWADQWD-NNPDPEPAS--------EKDKKKGKDGSSKSKFGKTVLSFKWVKELRKKNNK 121
            MDSG SWADQWD NNPDP P+S        +  KKK +DGS KS  GKT+L FKW+KELRKK+ K
Sbjct:    1 MDSGPSWADQWDYNNPDPLPSSTKEDESKKKNKKKKEEDGS-KSSLGKTLLGFKWMKELRKKSEK 64
[Close]
BLAST of Cc_v2.0_00117.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:8655253-8655438 FORWARD LENGTH=61)

HSP 1 Score: 51.2174 bits (121), Expect = 9.465e-10
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 0 
Query:   66 MDSGMSWADQWDNNPDPEPASEKD-------KKKGKDGSSKSKFGKTVLSFKWVKELRKKNNK 121
            MDSG+SWADQWD N DP P S  +       KKK +DG SKS  GK +L FKW+K L KK++K
Sbjct:    1 MDSGLSWADQWDYNSDPPPNSSNEDDKKKKKKKKKEDG-SKSGIGKAILGFKWMK-LGKKSDK 61
The following BLAST results are available for this feature:
BLAST of Cc_v2.0_00117.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A151SP79|A0A151SP79_CAJCA4.045e-31100.00Uncharacterized protein OS=Cajanus cajan OX=3821 G... [more]
tr|A0A445HHY3|A0A445HHY3_GLYSO3.573e-2284.21Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
tr|I1LNC3|I1LNC3_SOYBN3.573e-2284.21RIN4 pathogenic type III effector avirulence facto... [more]
tr|G7J2I0|G7J2I0_MEDTR2.638e-1873.68Uncharacterized protein OS=Medicago truncatula OX=... [more]
tr|A0A5N5HHA8|A0A5N5HHA8_9ROSA2.978e-1872.41Uncharacterized protein OS=Pyrus ussuriensis x Pyr... [more]
tr|A0A151SPM7|A0A151SPM7_CAJCA3.813e-1889.80Enzymatic polyprotein OS=Cajanus cajan OX=3821 GN=... [more]
tr|A0A151S3Q1|A0A151S3Q1_CAJCA4.398e-1887.76Polyprotein OS=Cajanus cajan OX=3821 GN=KK1_028871... [more]
tr|A0A151RCT8|A0A151RCT8_CAJCA2.606e-1785.71Polyprotein OS=Cajanus cajan OX=3821 GN=KK1_038333... [more]
tr|A0A1S3TA86|A0A1S3TA86_VIGRR8.570e-1782.14Uncharacterized protein LOC106753386 OS=Vigna radi... [more]
tr|V7D2H9|V7D2H9_PHAVU1.012e-1681.13Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
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BLAST of Cc_v2.0_00117.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot )
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cc_v2.0_00117.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
|1.568e-1361.54Symbols: no symbol available | no full name availa... [more]
|9.465e-1055.56Symbols: no symbol available | no full name availa... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>drCajCajn.Asha.2.0.Cc_v2.0_00117.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_00117.1; Name=Cc_v2.0_00117.1; organism=Cajanus cajan; type=mRNA; length=366bp
ATGGTCGAGCTAGCCTCTGCCTATTCCCAAAAAGAGTTTGAAGCAAGACT
ACAATTAATTAGAGCAGAACAAGATGACACTCAGCCCGAAGAAACGAGTT
CTTCTGATTCAATATCAACTAGTCCTTATCTTCGCAATGAAGATATAGAT
GCAAATGTGAAATTTTCTCTGATCCAAATAAGACAAAACGAAAACATGGA
TTCTGGCATGTCCTGGGCCGATCAATGGGACAACAACCCAGACCCTGAAC
CGGCATCAGAGAAAGACAAGAAGAAGGGCAAAGATGGGTCGAGCAAGAGC
AAATTTGGGAAGACTGTGCTGAGCTTCAAATGGGTGAAAGAACTTCGCAA
GAAAAACAACAAGTGA
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protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_00117.1

>drCajCajn.Asha.2.0.Cc_v2.0_00117.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_00117.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_00117.1; organism=Cajanus cajan; type=polypeptide; length=121bp
MVELASAYSQKEFEARLQLIRAEQDDTQPEETSSSDSISTSPYLRNEDID
ANVKFSLIQIRQNENMDSGMSWADQWDNNPDPEPASEKDKKKGKDGSSKS
KFGKTVLSFKWVKELRKKNNK
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mRNA from alignment at CcLG01_v2.0:1162164..1164123+

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>drCajCajn.Asha.2.0.Cc_v2.0_00117.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_00117.1; Name=Cc_v2.0_00117.1; organism=Cajanus cajan; type=mRNA; length=1960bp; location=Sequence derived from: CcLG01_v2.0:1162164..1164123+ (Cajanus cajan
ATGGTCGAGCTAGCCTCTGCCTATTCCCAAAAAGAGTTTGAAGCAAGACT
ACAATTAATTAGAGCAGAACAAGATGACACTCAGCCCGAAGAAACGAGTT
CTTCTGATTCAATATCAACTAGTCCTTATCTTCGCAATGAAGATATGTTT
GACTGAACCTCAAGATTCAATTATACAGAAAGACAATTGACAACTCTGTC
AAGACAGCAAGATAAAGTTATTTGTCAACATCACAAAACGACACAAGACA
ACTTATCAACAGTTCATCAAGATAAAGACATGTTACCAATTCCACAAGAA
GACAAGAAACTTTTTAAGATTCTTTATGTAAATTATTGTACTTTTTCTCT
TTCCTTTCTTACCCTTGTATAATTAGGTGAGTCACTACCCTCACTTGTAA
TTTAGTCCGTCCTAGTTAGTCTATATAAGGAGAAGTTATCCTCAGTTGTA
ATCATCGAAGTTTCAGAACAAGCtaggggtgtgcaaaaaatccaaattga
tccgaaccgatccataaccgatccgatccatattgaaaaatccgatccat
tttgaaaaaaatccgaaccgaaccactttataaaaccggttcatttatcc
gatccatttttacaaagtggattggttcggttcggtttggttttctaaaa
aaccgatccatatatgagtaaaaaagtggataactgcaccgcaccgaacc
gatccaatttcaaaaaaacggatccatattttaaaaaaaccaaaccgatc
cactttataaaaaatggatcggttaaccgatccacttttataaaacggtt
cggttcggtttggatcggttttttgaaaaaaccgatccatgaacacccct
aGAACAAGCTATCAATCTCTTAATAAACTTGTACTTTCAAAAACATCTGC
TATCTTTCAGAAATCTTTGTAAGTATTTCAATATGATCATCTTACTTGAA
CATGGTCATTTTCATATTACTTCTCATATTTTTCCATATCCTCATTTTTC
TATTACTCTGTATGTATATAATCAATATAGTTTTACCTGCACGTTTCCGA
TATTGGTATATATATAACTGATACAAAACAATTGATAGAAATGATAGCGA
ACAACTATTTCTCGTATCGGTTCCATTTCGTTGACTTCTCTTCTCATATG
ATATTTTAAGTTAGTCTTTTAAGAGTTGTCATTTTATCTTATTAATTTGT
TGACATGATCTCAAATGCTTATTACTCTGGTTGCCTATTATATTTCTCCA
ATTTCTCATATAGACAGGAAGGAAATTTCGTGTTTGTCATTTGAGTTGGA
AATCAAAATTACAAGTTCTACGGCCATTTTATCTTTAAAGCAACATTCGT
AGAATGTCAGGTTACCCTGCATAAGATAAATAAAGGAAAAAAATAATAAT
AACCTAACTATATTTTGTTGAACTTATGTTTACAAATAGACCCGATCAAT
ACGATATTATTAGTCAAGATCAAAGAAAAGAATACGAAAAGTGCAATAGA
ATTATATAGAGTTGTGTTACATGATAAATAGATAGATATGCAATAATTCC
TCCATCCACAAGACACAAGTACCAAAATTTAAGGACAATAACCAGGTTTA
ATTTAGATATGGTGTGTCCCAAACGAGACCATATAGCTTAACTAACTTTT
TGCCAAAAATATCTCCTGATTCATTGGAAAGGTAAGGATCCACGTTCTAC
AAGAATTACAAGACATTGATAGGTATAAAATATTTGCTAGAGATGCAAAT
GTGAAATTTTCTCTGATCCAAATAAGACAAAACGAAAACATGGATTCTGG
CATGTCCTGGGCCGATCAATGGGACAACAACCCAGACCCTGAACCGGCAT
CAGAGAAAGACAAGAAGAAGGGCAAAGATGGGTCGAGCAAGAGCAAATTT
GGGAAGACTGTGCTGAGCTTCAAATGGGTGAAAGAACTTCGCAAGAAAAA
CAACAAGTGA
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Coding sequence (CDS) from alignment at CcLG01_v2.0:1162164..1164123+

>drCajCajn.Asha.2.0.Cc_v2.0_00117.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_00117.1; Name=Cc_v2.0_00117.1; organism=Cajanus cajan; type=CDS; length=366bp; location=Sequence derived from: CcLG01_v2.0:1162164..1164123+ (Cajanus cajan
ATGGTCGAGCTAGCCTCTGCCTATTCCCAAAAAGAGTTTGAAGCAAGACT
ACAATTAATTAGAGCAGAACAAGATGACACTCAGCCCGAAGAAACGAGTT
CTTCTGATTCAATATCAACTAGTCCTTATCTTCGCAATGAAGATATAGAT
GCAAATGTGAAATTTTCTCTGATCCAAATAAGACAAAACGAAAACATGGA
TTCTGGCATGTCCTGGGCCGATCAATGGGACAACAACCCAGACCCTGAAC
CGGCATCAGAGAAAGACAAGAAGAAGGGCAAAGATGGGTCGAGCAAGAGC
AAATTTGGGAAGACTGTGCTGAGCTTCAAATGGGTGAAAGAACTTCGCAA
GAAAAACAACAAGTGA
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