Cc_v2.0_03007.1

Transcript Overview
NameCc_v2.0_03007.1
Unique NamedrCajCajn.Asha.2.0.Cc_v2.0_03007.1
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length312
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CcLG02_v2.0chromosomeCcLG02_v2.0:11920242..11921016 -Cajanus cajan cv. Asha genome v2.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
avjccaL344Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccaL355Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccaL435Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccaL620Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccaL166Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccapsR230Pisum sativum Cameor genome v1aPisum sativum
ccapsR237Pisum sativum Cameor genome v1aPisum sativum
ccapsR243Pisum sativum Cameor genome v1aPisum sativum
ccapsR281Pisum sativum Cameor genome v1aPisum sativum
carccaL241Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccavrvR214Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavrvR228Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavfhR207Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR247Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavfhR214Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccavrvR250Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavrvR268Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccapvR289Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccapvR304Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavfhR265Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccavssR223Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavssR252Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavssR288Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavuR184Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR239Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR217Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR272Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavumR293Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR234Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavuR248Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR315Vigna umbellata FF25 genome v1.0Vigna umbellata
ccccaL0943Cajanus cajan Asha genome v1.0Cajanus cajan
ccccaL1041Cajanus cajan Asha genome v1.0Cajanus cajan
ccavunR163Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccavunR189Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR249Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR284Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR298Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccavunR206Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccavunR218Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Psat6g081560.1Pisum sativum Cameor genome v1aPisum sativum
jg31790.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_014657612.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.Ca_v2.0_10399Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
Vfaba.Hedin2.R1.5g148520.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun07g060400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat3g034400.1Pisum sativum Cameor genome v1aPisum sativum
Vigun07g060400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Va02G016850.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Hedin2.R1.3g047760.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vum_08G02207.1Vigna umbellata FF25 genome v1.0Vigna umbellata
jg1083.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.007G228700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
evm.Ca_v2.0_07790Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
PvulFLAVERTChr07.1001428Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vum_08G02188.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-KK1_010351Cajanus cajan Asha genome v1.0Cajanus cajan
rna-KK1_036045Cajanus cajan Asha genome v1.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cc_v2.0_03007drCajCajn.Asha.2.0.Cc_v2.0_03007Cajanus cajangene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_03007.1.exon1drCajCajn.Asha.2.0.Cc_v2.0_03007.1.exon1Cajanus cajanexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_03007.1.utr3p1drCajCajn.Asha.2.0.Cc_v2.0_03007.1.utr3p1Cajanus cajanthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.Cc_v2.0_03007.1drCajCajn.Asha.2.0.cds.Cc_v2.0_03007.1Cajanus cajanCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_03007.1.utr5p1drCajCajn.Asha.2.0.Cc_v2.0_03007.1.utr5p1Cajanus cajanfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drCajCajn.Asha.2.0.Cc_v2.0_03007.1drCajCajn.Asha.2.0.Cc_v2.0_03007.1Cajanus cajanpolypeptide
drCajCajn.Asha.2.0.Cc_v2.0_03007.1drCajCajn.Asha.2.0.Cc_v2.0_03007.1-proteinCajanus cajanpolypeptide


Homology
[Close]
BLAST of Cc_v2.0_03007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151RJ26|A0A151RJ26_CAJCA (LysM domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_036045 PE=4 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 5.659e-70
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    1 MACVCSSTAMAEKISWNCAVLVALMLVLSSCESNTSDFTIQNANNSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFANRS 103
            MACVCSSTAMAEKISWNCAVLVALMLVLSSCESNTSDFTIQNANNSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFANRS
Sbjct:    1 MACVCSSTAMAEKISWNCAVLVALMLVLSSCESNTSDFTIQNANNSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFANRS 103
[Close]
BLAST of Cc_v2.0_03007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8M667|A0A8B8M667_ABRPR (Uncharacterized protein LOC113870897 OS=Abrus precatorius OX=3816 GN=LOC113870897 PE=4 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.504e-62
Identity = 95/107 (88.79%), Postives = 97/107 (90.65%), Query Frame = 0 
Query:    1 MACVCSSTAMAEKISWNCAVLVALMLVLSSCESNTSDFTIQ----NANNSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFANRS 103
            MAC CSSTAMAEKISWNCA+ VALMLVLSSCESNTS+FTIQ    N NN NNK CDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPF NRS
Sbjct:    1 MACGCSSTAMAEKISWNCALFVALMLVLSSCESNTSEFTIQMLEENVNNYNNKACDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFTNRS 107
[Close]
BLAST of Cc_v2.0_03007.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1LZI6|I1LZI6_SOYBN (LysM domain-containing protein OS=Glycine max OX=3847 GN=100786697 PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.163e-61
Identity = 94/108 (87.04%), Postives = 97/108 (89.81%), Query Frame = 0 
Query:    1 MACVCSSTAMAEKISWNCAVLVALMLVLSSCESNTSDFTIQ-----NANNSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFANRS 103
            MAC CSSTAMAEKISWNCAV VALMLVLSSCESNTSDFT Q     + +NSNNK CDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPF NR+
Sbjct:    1 MACGCSSTAMAEKISWNCAVFVALMLVLSSCESNTSDFTTQMMFHESVSNSNNKACDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFTNRA 108
[Close]
BLAST of Cc_v2.0_03007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0B2QTK5|A0A0B2QTK5_GLYSO (LysM domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_036792 PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.163e-61
Identity = 94/108 (87.04%), Postives = 97/108 (89.81%), Query Frame = 0 
Query:    1 MACVCSSTAMAEKISWNCAVLVALMLVLSSCESNTSDFTIQ-----NANNSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFANRS 103
            MAC CSSTAMAEKISWNCAV VALMLVLSSCESNTSDFT Q     + +NSNNK CDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPF NR+
Sbjct:    1 MACGCSSTAMAEKISWNCAVFVALMLVLSSCESNTSDFTTQMMFHESVSNSNNKACDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFTNRA 108
[Close]
BLAST of Cc_v2.0_03007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86VIW6|A0AA86VIW6_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS21824 PE=4 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 5.255e-59
Identity = 94/108 (87.04%), Postives = 95/108 (87.96%), Query Frame = 0 
Query:    1 MACVCSSTAMAEKISWNCAVLVALMLVLSSCESNTSDFTIQ----NANNSN-NKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFANRS 103
            MAC CSSTAMAEKISWNCAV VALMLVLSSCES+TSDFT Q      NN N NKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKI PF NRS
Sbjct:    1 MACGCSSTAMAEKISWNCAVFVALMLVLSSCESSTSDFTNQMFQEKVNNRNYNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKIRPFTNRS 108
[Close]
BLAST of Cc_v2.0_03007.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1L9B7|I1L9B7_SOYBN (LysM domain-containing protein OS=Glycine max OX=3847 GN=102670325 PE=4 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 7.765e-59
Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0 
Query:    1 MACVCSSTAMAEKISWNCAVLVALMLVLSSCESNTSDFTIQ---------NANNSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFANRS 103
            MAC CSST +AEKISWNC+V VALMLVLSSCESNTSDFT Q         N +N+NNK CDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPF NR 
Sbjct:    1 MACGCSSTTLAEKISWNCSVFVALMLVLSSCESNTSDFTSQMMLHGSVTGNISNNNNKACDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFTNRG 112
[Close]
BLAST of Cc_v2.0_03007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0B2PWJ6|A0A0B2PWJ6_GLYSO (LysM domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_026251 PE=4 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 7.765e-59
Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0 
Query:    1 MACVCSSTAMAEKISWNCAVLVALMLVLSSCESNTSDFTIQ---------NANNSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFANRS 103
            MAC CSST +AEKISWNC+V VALMLVLSSCESNTSDFT Q         N +N+NNK CDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPF NR 
Sbjct:    1 MACGCSSTTLAEKISWNCSVFVALMLVLSSCESNTSDFTSQMMLHGSVTGNISNNNNKACDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFTNRG 112
[Close]
BLAST of Cc_v2.0_03007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A371DZ97|A0A371DZ97_MUCPR (LysM domain-containing protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_62894 PE=4 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.141e-55
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 0 
Query:    1 MACVCSSTAMAEKISWNCAVLVALMLVLSSCESNTSDFTIQ----NANNSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGL 92
            MAC CSSTAMAEKISWNCAV VA+MLVLSSCESNTS+FTIQ    N NNSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGL
Sbjct:    1 MACGCSSTAMAEKISWNCAVFVAIMLVLSSCESNTSEFTIQMLHQNVNNSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGL 96
[Close]
BLAST of Cc_v2.0_03007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3STD8|A0A0S3STD8_PHAAN (LysM domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G294000 PE=4 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.903e-55
Identity = 88/106 (83.02%), Postives = 90/106 (84.91%), Query Frame = 0 
Query:    1 MACVCSSTAMAEKISWNCAVLVALMLVLSSCESNTSDFTIQN----ANNSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFANR 102
            MAC CSSTA+AEKISWN AV VALML+ SSCESNT DFT Q      NN N KVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPF  R
Sbjct:    1 MACGCSSTAVAEKISWNSAVFVALMLLFSSCESNTRDFTNQMFEECVNNGNYKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFNYR 106
[Close]
BLAST of Cc_v2.0_03007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9TVW3|A0A0L9TVW3_PHAAN (LysM domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0184160 PE=4 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.903e-55
Identity = 88/106 (83.02%), Postives = 90/106 (84.91%), Query Frame = 0 
Query:    1 MACVCSSTAMAEKISWNCAVLVALMLVLSSCESNTSDFTIQN----ANNSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFANR 102
            MAC CSSTA+AEKISWN AV VALML+ SSCESNT DFT Q      NN N KVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPF  R
Sbjct:    1 MACGCSSTAVAEKISWNSAVFVALMLLFSSCESNTRDFTNQMFEECVNNGNYKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFNYR 106
[Close]
BLAST of Cc_v2.0_03007.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:19566004-19566333 REVERSE LENGTH=109)

HSP 1 Score: 116.701 bits (291), Expect = 3.064e-35
Identity = 59/103 (57.28%), Postives = 71/103 (68.93%), Query Frame = 0 
Query:    6 SSTAMAEKISWNCAVLVALMLVLSSC----ESNTSDFTIQNAN------NSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINP 98
            SS A+AEKISW CAV  A+ML+++S     E +T     Q  +      +     CDEIY V+EGETLQTISEKCGDPYIVE NPHIHD DD+FPGL+I+I P
Sbjct:    5 SSMAVAEKISWYCAVFAAMMLLMNSFQVAQEGSTEIVEKQQPSMMITGYSHRRPACDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITP 107
[Close]
BLAST of Cc_v2.0_03007.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:24958325-24958633 FORWARD LENGTH=102)

HSP 1 Score: 97.4413 bits (241), Expect = 1.231e-27
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 0 
Query:    6 SSTAMAEKISWNCAVLVALMLVLSSCESNTSDFTIQNANNSNNKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPF 99
            S T  ++  +W  AV++  +++L S   N +  +I+ +  S  K C+EIY+V EGETL TI +KCGDP+IVE NPHIHDPDDVFPGLV+KI PF
Sbjct:    4 SRTGSSDMSAWCSAVVLLSLILLLSVRENNASNSIRGSQFST-KPCEEIYIVGEGETLHTIGDKCGDPFIVERNPHIHDPDDVFPGLVLKIAPF 96
[Close]
BLAST of Cc_v2.0_03007.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:13001463-13001795 REVERSE LENGTH=110)

HSP 1 Score: 87.8113 bits (216), Expect = 8.948e-24
Identity = 36/49 (73.47%), Postives = 45/49 (91.84%), Query Frame = 0 
Query:   49 KVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKIN 97
            + C+E+YVV EG+TL +ISEKCGDP+IVE NPHIHDPDDVFPGL+IK++
Sbjct:   57 RPCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKLH 105
The following BLAST results are available for this feature:
BLAST of Cc_v2.0_03007.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A151RJ26|A0A151RJ26_CAJCA5.659e-70100.00LysM domain-containing protein OS=Cajanus cajan OX... [more]
tr|A0A8B8M667|A0A8B8M667_ABRPR2.504e-6288.79Uncharacterized protein LOC113870897 OS=Abrus prec... [more]
tr|I1LZI6|I1LZI6_SOYBN1.163e-6187.04LysM domain-containing protein OS=Glycine max OX=3... [more]
tr|A0A0B2QTK5|A0A0B2QTK5_GLYSO1.163e-6187.04LysM domain-containing protein OS=Glycine soja OX=... [more]
tr|A0AA86VIW6|A0AA86VIW6_9FABA5.255e-5987.04Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|I1L9B7|I1L9B7_SOYBN7.765e-5981.25LysM domain-containing protein OS=Glycine max OX=3... [more]
tr|A0A0B2PWJ6|A0A0B2PWJ6_GLYSO7.765e-5981.25LysM domain-containing protein OS=Glycine soja OX=... [more]
tr|A0A371DZ97|A0A371DZ97_MUCPR1.141e-5590.63LysM domain-containing protein (Fragment) OS=Mucun... [more]
tr|A0A0S3STD8|A0A0S3STD8_PHAAN6.903e-5583.02LysM domain-containing protein OS=Vigna angularis ... [more]
tr|A0A0L9TVW3|A0A0L9TVW3_PHAAN6.903e-5583.02LysM domain-containing protein OS=Phaseolus angula... [more]
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BLAST of Cc_v2.0_03007.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot )
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cc_v2.0_03007.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11)
Total hits: 3
Match NameE-valueIdentityDescription
|3.064e-3557.28Symbols: no symbol available | no full name availa... [more]
|1.231e-2753.19Symbols: no symbol available | no full name availa... [more]
|8.948e-2473.47Symbols: no symbol available | no full name availa... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036779LysM domain superfamilyGENE3D3.10.350.10LysM domaincoord: 41..103
e-value: 6.0E-9
score: 37.3
IPR018392LysM domainPFAMPF01476LysMcoord: 55..96
e-value: 0.053
score: 24.8
IPR018392LysM domainCDDcd00118LysMcoord: 54..96
e-value: 6.10768E-7
score: 40.9317
NoneNo IPR availablePANTHERPTHR33648EMBRYO SAC 1coord: 6..101

Sequences
The following sequences are available for this feature:

mRNA sequence

>drCajCajn.Asha.2.0.Cc_v2.0_03007.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_03007.1; Name=Cc_v2.0_03007.1; organism=Cajanus cajan; type=mRNA; length=312bp
ATGGCTTGTGTGTGTTCATCAACAGCAATGGCAGAGAAGATTTCATGGAA
TTGTGCTGTGCTTGTGGCACTAATGCTGGTGTTGAGTAGCTGCGAGTCAA
ACACAAGTGACTTCACAATTCAGAATGCCAACAATAGCAACAACAAGGTG
TGTGATGAGATTTACGTGGTTCGTGAGGGAGAGACCCTTCAAACTATAAG
TGAAAAATGTGGGGATCCTTATATTGTTGAAGAGAATCCACATATCCATG
ACCCTGATGATGTTTTCCCTGGCCTAGTTATCAAGATTAACCCCTTCGCC
AATAGATCATGA
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protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_03007.1

>drCajCajn.Asha.2.0.Cc_v2.0_03007.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_03007.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_03007.1; organism=Cajanus cajan; type=polypeptide; length=103bp
MACVCSSTAMAEKISWNCAVLVALMLVLSSCESNTSDFTIQNANNSNNKV
CDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFA
NRS
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mRNA from alignment at CcLG02_v2.0:11920242..11921016-

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drCajCajn.Asha.2.0.Cc_v2.0_03007.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_03007.1; Name=Cc_v2.0_03007.1; organism=Cajanus cajan; type=mRNA; length=775bp; location=Sequence derived from: CcLG02_v2.0:11920242..11921016- (Cajanus cajan
TTTTAAGGGGGTCTTTTTTCAAAAGCAAAACCTTCAACAAGGTGACAACA
TCAACAAAGGGTGCAATTTTTTTAAGATTTTAGGCATGGCTTGTGTGTGT
TCATCAACAGCAATGGCAGAGAAGATTTCATGGAATTGTGCTGTGCTTGT
GGCACTAATGCTGGTGTTGAGTAGCTGCGAGTCAAACACAAGTGACTTCA
CAATTCAGAATGCCAACAATAGCAACAACAAGGTGTGTGATGAGATTTAC
GTGGTTCGTGAGGGAGAGACCCTTCAAACTATAAGTGAAAAATGTGGGGA
TCCTTATATTGTTGAAGAGAATCCACATATCCATGACCCTGATGATGTTT
TCCCTGGCCTAGTTATCAAGATTAACCCCTTCGCCAATAGATCATGAAAT
GTTCCAATTTGGGATAATGTTTTTCAACTCAATGTTCTTCTGTGTGAGAA
AGGTTAGAAAAAGCAACTCATGTATGTAGCCATTTACGGTTTCAATTTCC
ATGCAAAATGCTCGTCTTAGAAGGATAGAAGCATAATTCATCAACTCAAA
GTGGTTATGTTGTGAATTTCCATTTTCCAGTTCAATCTCTCTGAACTACT
TTTGATTTTGTATGAGAACACTTATTGTAGTGAAGTTCTTTTGTACAATA
TATATAGGTTAAAATAGAAGAGTGACACAAATTAGAGGGATGAATGGCAA
ATATATCTACCTTTATGGTTGTATGAACTTTTCGTTTGATGAAAAAAATG
AAGAAATAGAATCCAACTATTTCAC
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Coding sequence (CDS) from alignment at CcLG02_v2.0:11920242..11921016-

>drCajCajn.Asha.2.0.Cc_v2.0_03007.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_03007.1; Name=Cc_v2.0_03007.1; organism=Cajanus cajan; type=CDS; length=312bp; location=Sequence derived from: CcLG02_v2.0:11920242..11921016- (Cajanus cajan
ATGGCTTGTGTGTGTTCATCAACAGCAATGGCAGAGAAGATTTCATGGAA
TTGTGCTGTGCTTGTGGCACTAATGCTGGTGTTGAGTAGCTGCGAGTCAA
ACACAAGTGACTTCACAATTCAGAATGCCAACAATAGCAACAACAAGGTG
TGTGATGAGATTTACGTGGTTCGTGAGGGAGAGACCCTTCAAACTATAAG
TGAAAAATGTGGGGATCCTTATATTGTTGAAGAGAATCCACATATCCATG
ACCCTGATGATGTTTTCCCTGGCCTAGTTATCAAGATTAACCCCTTCGCC
AATAGATCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR036779LysM_dom_sf
IPR018392LysM_dom