Cc_v2.0_03338.1

Transcript Overview
NameCc_v2.0_03338.1
Unique NamedrCajCajn.Asha.2.0.Cc_v2.0_03338.1
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length324
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CcLG02_v2.0chromosomeCcLG02_v2.0:24106580..24110279 -Cajanus cajan cv. Asha genome v2.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
avjccaL060Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0138Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0249Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL335Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccaL442Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0553Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0654Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0872Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0878Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ccapsR225Pisum sativum Cameor genome v1aPisum sativum
ccavrvR218Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavfhR204Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccavfhR211Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR250Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccapvR264Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavfhR271Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR320Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavssR216Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavssR238Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavssR270Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavuR188Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR261Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavumR299Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR243Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR311Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavumR316Vigna umbellata FF25 genome v1.0Vigna umbellata
ccccaL0948Cajanus cajan Asha genome v1.0Cajanus cajan
ccccaL1079Cajanus cajan Asha genome v1.0Cajanus cajan
ccavunR166Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR254Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR282Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccavunR213Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR319Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigun01g156600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Phvul.007G162900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Phvul.001G174300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vum_04G02345.1Vigna umbellata FF25 genome v1.0Vigna umbellata
PvulFLAVERTChr07.1001059Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-TanjilR_14636Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_18667Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
PvulFLAVERTChr01.1129Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_014639174.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vum_08G02027.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun07g079000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va02G032970.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun01g156600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun07g079000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Va03G072650.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cc_v2.0_03338drCajCajn.Asha.2.0.Cc_v2.0_03338Cajanus cajangene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.Cc_v2.0_03338.1drCajCajn.Asha.2.0.cds.Cc_v2.0_03338.1Cajanus cajanCDS
cds.Cc_v2.0_03338.1drCajCajn.Asha.2.0.cds.Cc_v2.0_03338.1_2Cajanus cajanCDS
cds.Cc_v2.0_03338.1drCajCajn.Asha.2.0.cds.Cc_v2.0_03338.1_3Cajanus cajanCDS
cds.Cc_v2.0_03338.1drCajCajn.Asha.2.0.cds.Cc_v2.0_03338.1_4Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_03338.1.exon4drCajCajn.Asha.2.0.Cc_v2.0_03338.1.exon4Cajanus cajanexon
Cc_v2.0_03338.1.exon3drCajCajn.Asha.2.0.Cc_v2.0_03338.1.exon3Cajanus cajanexon
Cc_v2.0_03338.1.exon2drCajCajn.Asha.2.0.Cc_v2.0_03338.1.exon2Cajanus cajanexon
Cc_v2.0_03338.1.exon1drCajCajn.Asha.2.0.Cc_v2.0_03338.1.exon1Cajanus cajanexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drCajCajn.Asha.2.0.Cc_v2.0_03338.1drCajCajn.Asha.2.0.Cc_v2.0_03338.1Cajanus cajanpolypeptide
drCajCajn.Asha.2.0.Cc_v2.0_03338.1drCajCajn.Asha.2.0.Cc_v2.0_03338.1-proteinCajanus cajanpolypeptide


Homology
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A835HAK6|A0A835HAK6_9MAGN (Large ribosomal subunit protein uL4 C-terminal domain-containing protein OS=Coptis chinensis OX=261450 GN=IFM89_034255 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.055e-10
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 0 
Query:   11 EWKART--------VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGK 54
            EW+ R         VE+LNLLKLALG H+GRFIIWTK AF+KL++I GSF K
Sbjct:    3 EWEVRNIPGVEVANVERLNLLKLALGGHLGRFIIWTKSAFEKLDSIYGSFDK 54
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D5A9M7|A0A9D5A9M7_PEA (60S ribosomal protein L4, variant 2 OS=Pisum sativum OX=3888 GN=KIW84_063439 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.717e-9
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGL 72
            VE+LNLLKLA G H+GRF+IWTK AF+KL++I GSF KG    +K+K  + P+  +
Sbjct:  209 VERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKGS---EKKKGYVLPRAKM 261
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4WA24|A0A9D4WA24_PEA (60S ribosomal protein L4 OS=Pisum sativum OX=3888 GN=KIW84_063439 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.475e-9
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGL 72
            VE+LNLLKLA G H+GRF+IWTK AF+KL++I GSF KG    +K+K  + P+  +
Sbjct:  236 VERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKGS---EKKKGYVLPRAKM 288
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A5N5HI56|A0A5N5HI56_9ROSA (60S ribosomal protein L4 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_017541 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.879e-9
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGL 72
            VE+L+LLKLA G H+GRF++WTK AFQKL++I GSF    K+ +K+KR + P+  +
Sbjct:  239 VERLSLLKLAPGGHLGRFVVWTKSAFQKLDSIYGSF---DKVSEKKKRYVLPRSKM 291
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A7J8NRI7|A0A7J8NRI7_GOSRA (Large ribosomal subunit protein uL4 C-terminal domain-containing protein (Fragment) OS=Gossypium raimondii OX=29730 GN=Gorai_021829 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.062e-9
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 0 
Query:   16 TVEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGL 72
             VE+LNLLKLA G H+GRFIIWTK A++KL++I GSF   +K  +K+KR I P+  +
Sbjct:   69 NVERLNLLKLAPGGHLGRFIIWTKSAYEKLDSIYGSF---EKPSEKKKRYILPRSKM 122
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0D2Q433|A0A0D2Q433_GOSRA (Large ribosomal subunit protein uL4 C-terminal domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_001G248400 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 4.197e-9
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGL 72
            VE+LNLLKLA G H+GRFIIWTK A++KL++I GSF   +K  +K+KR I P+  +
Sbjct:  241 VERLNLLKLAPGGHLGRFIIWTKSAYEKLDSIYGSF---EKPSEKKKRYILPRSKM 293
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0D2M2R1|A0A0D2M2R1_GOSRA (Large ribosomal subunit protein uL4 C-terminal domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_001G248400 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 4.201e-9
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGL 72
            VE+LNLLKLA G H+GRFIIWTK A++KL++I GSF   +K  +K+KR I P+  +
Sbjct:  241 VERLNLLKLAPGGHLGRFIIWTKSAYEKLDSIYGSF---EKPSEKKKRYILPRSKM 293
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A5C7ILQ9|A0A5C7ILQ9_9ROSI (Large ribosomal subunit protein uL4 C-terminal domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_005060 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.921e-9
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 0 
Query:   16 TVEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKK 57
             VE+LNLLKLA G H+GRF+IWTK AF+KL++I G+F KG +
Sbjct:  142 NVERLNLLKLAPGRHLGRFVIWTKSAFEKLDSIYGTFEKGSE 183
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy TrEMBL (2024)
Match: tr|Q2PER2|Q2PER2_TRIPR (Putative 60S ribosomal protein L1 OS=Trifolium pratense OX=57577 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.616e-9
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGL 72
            VE+LNLLKLA G H+GRF++WTK AF+KL++I GSF KG    +K+K  + P+  +
Sbjct:  238 VERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKGS---EKKKGYVLPRAKM 290
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy TrEMBL (2024)
Match: tr|Q2PEV4|Q2PEV4_TRIPR (60S ribosomal protein l4-like OS=Trifolium pratense OX=57577 GN=L195_g026162 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 6.072e-9
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGL 72
            VE+LNLLKLA G H+GRF++WTK AF+KL++I GSF KG    +K+K  + P+  +
Sbjct:  238 VERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKGS---EKKKGYVLPRAKM 290
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P49691|RL4B_ARATH (Large ribosomal subunit protein uL4y OS=Arabidopsis thaliana OX=3702 GN=RPL4D PE=1 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 6.844e-11
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGL 72
            VE+LNLLKLA G H+GRF+IWTK AF+KL +I GSF   +K  +K+K  + P+  +
Sbjct:  239 VERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSF---EKPSEKKKGYVLPRAKM 291
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9SF40|RL4A_ARATH (Large ribosomal subunit protein uL4z OS=Arabidopsis thaliana OX=3702 GN=RPL4A PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 8.475e-11
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGL 72
            VE+LNLLKLA G H+GRF+IWTK AF+KL +I GSF   +K  +K+K  + P+  +
Sbjct:  238 VERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSF---EKPSEKKKGYVLPRAKM 290
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9XF97|RL4_PRUAR (Large ribosomal subunit protein uL4 OS=Prunus armeniaca OX=36596 GN=RPL4 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.205e-10
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGK 54
            VE+LNLLKLA G H+GRF++WTK AF+KL++I GSF K
Sbjct:  240 VERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDK 277
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q54Z69|RL4_DICDI (Large ribosomal subunit protein uL4 OS=Dictyostelium discoideum OX=44689 GN=rpl4 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 8.478e-9
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDK 60
            V +LNLLKLA G H+GRFIIWTK AF++L++  G+F K     K
Sbjct:  231 VSRLNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKK 274
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P14117|RL4_XENTR (Large ribosomal subunit protein uL4 (Fragment) OS=Xenopus tropicalis OX=8364 GN=rpl4 PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 1.887e-8
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 0 
Query:   16 TVEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKL 58
             V KLNLL+LALG H+GRF IWT+ +F+KL+ + G++ K  KL
Sbjct:    5 NVSKLNLLRLALGGHVGRFCIWTESSFRKLDDLYGTWRKSAKL 47
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P09180|RL4_DROME (Large ribosomal subunit protein uL4 OS=Drosophila melanogaster OX=7227 GN=RpL4 PE=1 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 2.592e-8
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDK 60
            V+KLNLLKLA G H+GRF+IWT+ AF +LN + G++ K   L K
Sbjct:  235 VDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGTWKKPSTLKK 278
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P0DJ55|RL4_TETTS (Large ribosomal subunit protein uL4 OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=RPL4 PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 3.693e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSF 52
            V +LNLL+LA G H+GRFIIWT+ AF+KLN I G++
Sbjct:  238 VNRLNLLQLAPGGHVGRFIIWTESAFKKLNEIFGTY 273
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|O02056|RL4_CAEEL (Large ribosomal subunit protein uL4 OS=Caenorhabditis elegans OX=6239 GN=rpl-4 PE=1 SV=3)

HSP 1 Score: 52.7582 bits (125), Expect = 4.365e-8
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGS 51
            VE+LNLLKLA G H+GR IIWT+ AF+KL+TI G+
Sbjct:  231 VERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGT 265
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|O15594|RL4_ENTH1 (Large ribosomal subunit protein uL4 OS=Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM) OX=294381 GN=RPL4 PE=2 SV=3)

HSP 1 Score: 51.9878 bits (123), Expect = 7.280e-8
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKR 62
            VE L++L LA G HMGRFIIWT+ AF+KLNTI   FG  KK+ + +
Sbjct:  234 VENLSVLNLAPGCHMGRFIIWTESAFKKLNTI---FGTQKKMAQGK 276
[Close]
BLAST of Cc_v2.0_03338.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P49669|RL4_TRYBB (Large ribosomal subunit protein uL4 OS=Trypanosoma brucei brucei OX=5702 GN=RPL4 PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 1.611e-7
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSF 52
            V  LNLL LA G H+GRFIIWTK AF+KL+ I G+F
Sbjct:  230 VNSLNLLHLAPGGHVGRFIIWTKSAFEKLDKIFGTF 265
[Close]
BLAST of Cc_v2.0_03338.1 vs. Araport11
Match: | (Symbols: RPL4 | ribosomal large subunit 4 | chr5:657830-659526 FORWARD LENGTH=407)

HSP 1 Score: 60.4622 bits (145), Expect = 6.922e-12
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGL 72
            VE+LNLLKLA G H+GRF+IWTK AF+KL +I GSF   +K  +K+K  + P+  +
Sbjct:  239 VERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSF---EKPSEKKKGYVLPRAKM 291
[Close]
BLAST of Cc_v2.0_03338.1 vs. Araport11
Match: | (Symbols: RPL4 | ribosomal large subunit 4 | chr5:657830-659526 FORWARD LENGTH=406)

HSP 1 Score: 60.4622 bits (145), Expect = 7.334e-12
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGL 72
            VE+LNLLKLA G H+GRF+IWTK AF+KL +I GSF   +K  +K+K  + P+  +
Sbjct:  239 VERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSF---EKPSEKKKGYVLPRAKM 291
[Close]
BLAST of Cc_v2.0_03338.1 vs. Araport11
Match: | (Symbols: SAC56 | Suppressor of Acaulis 56 | chr3:2953813-2955444 FORWARD LENGTH=406)

HSP 1 Score: 60.4622 bits (145), Expect = 8.572e-12
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGL 72
            VE+LNLLKLA G H+GRF+IWTK AF+KL +I GSF   +K  +K+K  + P+  +
Sbjct:  238 VERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSF---EKPSEKKKGYVLPRAKM 290
[Close]
BLAST of Cc_v2.0_03338.1 vs. Araport11
Match: | (Symbols: SAC56 | Suppressor of Acaulis 56 | chr3:2953813-2955444 FORWARD LENGTH=405)

HSP 1 Score: 60.4622 bits (145), Expect = 8.650e-12
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 0 
Query:   17 VEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGL 72
            VE+LNLLKLA G H+GRF+IWTK AF+KL +I GSF   +K  +K+K  + P+  +
Sbjct:  238 VERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSF---EKPSEKKKGYVLPRAKM 290
The following BLAST results are available for this feature:
BLAST of Cc_v2.0_03338.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A835HAK6|A0A835HAK6_9MAGN1.055e-1061.54Large ribosomal subunit protein uL4 C-terminal dom... [more]
tr|A0A9D5A9M7|A0A9D5A9M7_PEA2.717e-955.3660S ribosomal protein L4, variant 2 OS=Pisum sativ... [more]
tr|A0A9D4WA24|A0A9D4WA24_PEA3.475e-955.3660S ribosomal protein L4 OS=Pisum sativum OX=3888 ... [more]
tr|A0A5N5HI56|A0A5N5HI56_9ROSA3.879e-953.5760S ribosomal protein L4 OS=Pyrus ussuriensis x Py... [more]
tr|A0A7J8NRI7|A0A7J8NRI7_GOSRA4.062e-956.14Large ribosomal subunit protein uL4 C-terminal dom... [more]
tr|A0A0D2Q433|A0A0D2Q433_GOSRA4.197e-957.14Large ribosomal subunit protein uL4 C-terminal dom... [more]
tr|A0A0D2M2R1|A0A0D2M2R1_GOSRA4.201e-957.14Large ribosomal subunit protein uL4 C-terminal dom... [more]
tr|A0A5C7ILQ9|A0A5C7ILQ9_9ROSI4.921e-964.29Large ribosomal subunit protein uL4 C-terminal dom... [more]
tr|Q2PER2|Q2PER2_TRIPR5.616e-953.57Putative 60S ribosomal protein L1 OS=Trifolium pra... [more]
tr|Q2PEV4|Q2PEV4_TRIPR6.072e-953.5760S ribosomal protein l4-like OS=Trifolium pratens... [more]
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BLAST of Cc_v2.0_03338.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot )
Total hits: 10
Match NameE-valueIdentityDescription
sp|P49691|RL4B_ARATH6.844e-1153.57Large ribosomal subunit protein uL4y OS=Arabidopsi... [more]
sp|Q9SF40|RL4A_ARATH8.475e-1153.57Large ribosomal subunit protein uL4z OS=Arabidopsi... [more]
sp|Q9XF97|RL4_PRUAR2.205e-1068.42Large ribosomal subunit protein uL4 OS=Prunus arme... [more]
sp|Q54Z69|RL4_DICDI8.478e-956.82Large ribosomal subunit protein uL4 OS=Dictyosteli... [more]
sp|P14117|RL4_XENTR1.887e-855.81Large ribosomal subunit protein uL4 (Fragment) OS=... [more]
sp|P09180|RL4_DROME2.592e-856.82Large ribosomal subunit protein uL4 OS=Drosophila ... [more]
sp|P0DJ55|RL4_TETTS3.693e-863.89Large ribosomal subunit protein uL4 OS=Tetrahymena... [more]
sp|O02056|RL4_CAEEL4.365e-868.57Large ribosomal subunit protein uL4 OS=Caenorhabdi... [more]
sp|O15594|RL4_ENTH17.280e-858.70Large ribosomal subunit protein uL4 OS=Entamoeba h... [more]
sp|P49669|RL4_TRYBB1.611e-766.67Large ribosomal subunit protein uL4 OS=Trypanosoma... [more]
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BLAST of Cc_v2.0_03338.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11)
Total hits: 4
Match NameE-valueIdentityDescription
|6.922e-1253.57Symbols: RPL4 | ribosomal large subunit 4 | chr5:6... [more]
|7.334e-1253.57Symbols: RPL4 | ribosomal large subunit 4 | chr5:6... [more]
|8.572e-1253.57Symbols: SAC56 | Suppressor of Acaulis 56 | chr3:2... [more]
|8.650e-1253.57Symbols: SAC56 | Suppressor of Acaulis 56 | chr3:2... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023574Large ribosomal subunit protein uL4 domain superfamilyGENE3D3.40.1370.10coord: 10..69
e-value: 3.6E-11
score: 44.8
IPR023574Large ribosomal subunit protein uL4 domain superfamilySUPERFAMILY52166Ribosomal protein L4coord: 12..47
IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typePANTHERPTHR1943160S RIBOSOMAL PROTEIN L4coord: 16..60

Sequences
The following sequences are available for this feature:

mRNA sequence

>drCajCajn.Asha.2.0.Cc_v2.0_03338.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_03338.1; Name=Cc_v2.0_03338.1; organism=Cajanus cajan; type=mRNA; length=324bp
ATGTCTTGCAAGGCCCACTACTGGTGTACGGAATGGAAGGCGCGAACTGT
GGAGAAACTAAACCTTCTGAAGCTCGCTCTTGGGGAACACATGGGAAGGT
TTATTATCTGGACCAAGTTTGCTTTTCAGAAACTGAACACTATTTCTGGG
TCGTTTGGAAAGGGGAAGAAGCTTGACAAGAAGAGAAAGAGGAAGATAGA
CCCTAAGGGGGGcttaggaattcctcctcctcctcctctgcttgttccag
atccatctacatGTTATCATGTTACTCTACTTGTTGGAGGTGATGAAGGA
GCAAGAATCCTTTGTTATCGGTGA
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protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_03338.1

>drCajCajn.Asha.2.0.Cc_v2.0_03338.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_03338.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_03338.1; organism=Cajanus cajan; type=polypeptide; length=107bp
MSCKAHYWCTEWKARTVEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISG
SFGKGKKLDKKRKRKIDPKGGLGIPPPPPLLVPDPSTCYHVTLLVGGDEG
ARILCYR
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mRNA from alignment at CcLG02_v2.0:24106580..24110279-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>drCajCajn.Asha.2.0.Cc_v2.0_03338.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_03338.1; Name=Cc_v2.0_03338.1; organism=Cajanus cajan; type=mRNA; length=3700bp; location=Sequence derived from: CcLG02_v2.0:24106580..24110279- (Cajanus cajan
ATGTCTTGCAAGGCCCACTACTGGTGTACGGAATGGAAGGCGCGAACTGT
GGAGAAACTAAACCTTCTGAAGCTCGCTCTTGGGGAACACATGGGAAGGT
TTATTATCTGGACCAAGTTTGCTTTTCAGAAACTGAACACTATTTCTGGG
TCGTTTGGAAAGGGGAAGAAGCTTGACAAGAAGAGAAAGAGGAAGGTTTG
TGTCGTAGGATCATCAACATTGTTACTTGTAATTCTCTCATTTAATTACT
TGTCTAATTGAACTTTTTTTCCTTGTTCTTTTCAGCAAATAAAATAATAT
ATCTCTGGTTTTGTGTGAAAATTTTGTTTGTCAGAATTTACTGCAAATTC
TGGTCGGGTGTTTCACAGAAATTATGTGGTTTTGTTGCATGCTCAATGCA
TATTTGTTGAGTTTTCTATTACAGTTTTAGTTTTGTGGTTTTGTTGCAAC
TTTATTCTACTATTTTTTCAACAAAGTTTACTTTAATTTTGACATTACCC
TTTTTTTCTTTTAAATCTAATTTACTATGTAAAACTTAATTTAGTTATAT
TTTAAAAAATTAATATCTTAAACCACTTTACCCAACCGATAATTCATTCT
AATTTAAAAATAATATCATTTTTACGAACACTCTAAAAAGAAAAACCTCA
ATGCAAATGGCGCAAATTTTAAAAAAAATATGGATGTCTCTAAAAACAAA
TTGAAATTTAATACAAGTCTTTGAGAGAATAAATGTACATTTTATTTTTA
TTTTTTATTTTTTAAAATAATCATTACTATGGTATACTTGAACCTTCCAT
TTAATAATTGGAGGGATTTGAACTTAATCAAATGTGAATGGATGTCAAAT
TGGAAATAGAATCTTACAAGACCCTTTTATCACAGAAATTATCAATGTGA
AGATGTTTCTCACTCTTTTTAGAGAGAAAAAAAATTATTAGGTGATTCAG
GCCGTTCCATATTTATATATCACATGCAACCTCTACAACTTATGGACTGA
CTAGACCAAAATGTTGAATTCAAACCTCTCAATAAGAAGATTATAATAAT
ATAAAAATGAAAAATTCAAATCATGGTGTGTATCTAAAAAAATTGGAAAT
GTAAATCAACTTTTTAACTCATATAATGGCTCTATGCTTCTGGAACTCGA
ATTCCCTTATCTCCCATCTTTTCTGCATGCACTAGAAAAGCTAAATGAGA
AGAAAAGAAAAAGTAAAGCTCTAAATGATATTTTTTAATACAATGTCTAA
AATATTGGAGGAATTTGTAGAGAAAATATTTAAAAATATTTTAATATAAT
GTCTAATATTAAATTTAAGGATATAAAGAAAAATTAGTTTTTAAAACTTC
TCTCATCACTAAATAATAAGAAACTATTTACTCTCCTCTTCTCTCAATCA
AATAAAATTCCTGATTTCTTTTCTCTTAGTACTTATAAGTAATATTTGAA
TTCATTCTAACATTGACAAAAAAATATATGATTTGACTGAATACAAATAT
GAGTAATACCTAATTTATTAAATCGAGAACGAGGATAAATATACACTTAA
TCATTTCATACCTACTTTAAATTTTTAGAAACTTAATTTATTTTTTAAAA
TTTACTTGATATTTATATGATTCTTATTTTATTTTAAATTTAAGTCAAAT
AAAATTTAATTTGTATAATTTTGGAATTTCTACTATGATGAAATCCTTGT
TTTTTTTAAATATTTTAAAAAAAATTAATTAATTTTTTAGTAAGTACCGA
ATAGGCATAGATATGTTCGATATTTGATAGTGACAAAAATGAGAACATAA
ATCTTATACCAAAATATAAAAAATGAGAATGGGACAAGATAGTGAAACCT
ATACCGTTTTCCTCCATATTTCCTCTCCTCCCCTCTTTTGAAGTAGATAG
ACCCTAAGGGGGGCTTAGGGTATGTTTGCTTTGCCGTTTAGGCACCCAAA
TGGACGTTTAGTTTGCATTGAATGTTGTACCCGTTTGTTTGGTAATTTTT
TTACGTTACGTTAAATTTCATTATCTTCAAAACGTACGTTACATCCAAAG
CAACATCTATGTTGCTTTTCCGTTGAACGAGAAGTTTCCGTTTCTTAATT
CTCTTTTCACCCGTAGCATTTAAATTTCTTCAACTACTGGCAACAGTCAC
CATTACTCTCACCTACCAACTTGAAGAAGTAATAAATCTAGTATATTACT
TGGATTCGAAACATTTTTTGCTTGGGCATATAGAATTCCTCCTCCTCCTC
CTCTGCTTGTTCCAGATCCATCTACATGTGAGCTCTCTGATTTTGAATTT
CTTAATTTTTTTTTTGGATTCATCTGCATGTTGGCTCTCTGATTTTAGAT
TTCTATCTTGGTAAGATTTTGTTATTTCCCCTTCTTGTGCATAAAAGATT
TCTTAACTTTTTAAATTCATTATTGTTATTATCTCTTTTGAATCGTTGAT
TTTTTTTCCAGATTCATCTATTTTTGATTTTATCTTCAAATGTGCACACT
ATTGTGATGATTTTTTTATTTATAATTTATTATACTAAGTTGAATGAGGC
TATAAATGAATTGTGATTTTTTTATATAATAGATTAATGAGTAACGACAA
GAGAAAAGGTCTTGTAAATACTTCTCTTGTTGATAATGAAGGTGTTAAGG
CAAAAGCTGCATGGGATGTGAAAGCCACCAAGATGTTTGTTAAATTATGC
TTGGATCAAGTTTATAAAGGAGAACGAAATGGTACTAACCTTACAAAAAA
AGGTGGAAAGTTGTTGAATCTGAATTCAACATGAAAAGTGGAAGAAAATA
TGGCAAGAGTCAATGTAGAAACAAATGGGATAATCTTAAGAAGGAATGGT
CAATATGGTACACGTTGTTTGGCAAAGAGACAGGTTTAGGATAGGATAAT
GTAAGAAATACAGTAGATGCTTCAGACGAGTGGTGGGATAAAAAGCAAAT
GGTATGAAGTCTTTTAATGTGAAGTTAGAATTTTTAAATTCCTTTATGTA
ATACAATATGTTGATTAGTTGTAACATGCAGGAAAATCCACTTTATGGAA
AATTCAGATATAAAGGACTTTCTTTTGCCAATGATTTAACTACATTAAAA
TAATAACAATAAAATTTTTTCATCAATTCAAATATACTAAATAACAAAAT
AAACAATATTAATATCATTATAAAATATATACTCATTTTAATAATCATAC
ATGTGAAAGTACTTTTCATTAATATTATCCAAACAACTTTTATTTCAACA
AAGTACTTCTAGAATAAAAGTACCCAAACATAAATCAAGTTATTCTAAAC
TTACTTTTAACTAAACTTAAGTTCACAAAATTAAGCTCAACTAAACTTAA
CTTTTTTAACTGAAATCCAAACACACACTTAGAAGTTGGTACGGACTCCT
CTTTTCTCTTCACTAGGCCCATCTTATTTGGTGAGAGGGAGGAGGTCCAT
CTCTTAAAGCTTGGTACAAATGTGGTAGGAAGGAGAGTTTATTTGGTTAG
AACTTTGCTTTGAATTAAAAACATGTTGTTTCAGATCTATATACTGTTTT
TGTTGCTTCATTTCATGTTGTTGTCTTGCTAGTTTACAACATTTTGATCT
CACTTTACATGAGTATTATGATGTGATTTTGGTCTCAGGTTATCATGTTA
CTCTACTTGTTGGAGGTGATGAAGGAGCAAGAATCCTTTGTTATCGGTGA
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Coding sequence (CDS) from alignment at CcLG02_v2.0:24106580..24110279-

>drCajCajn.Asha.2.0.Cc_v2.0_03338.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_03338.1; Name=Cc_v2.0_03338.1; organism=Cajanus cajan; type=CDS; length=324bp; location=Sequence derived from: CcLG02_v2.0:24106580..24110279- (Cajanus cajan
ATGTCTTGCAAGGCCCACTACTGGTGTACGGAATGGAAGGCGCGAACTGT
GGAGAAACTAAACCTTCTGAAGCTCGCTCTTGGGGAACACATGGGAAGGT
TTATTATCTGGACCAAGTTTGCTTTTCAGAAACTGAACACTATTTCTGGG
TCGTTTGGAAAGGGGAAGAAGCTTGACAAGAAGAGAAAGAGGAAGATAGA
CCCTAAGGGGGGCTTAGGAATTCCTCCTCCTCCTCCTCTGCTTGTTCCAG
ATCCATCTACATGTTATCATGTTACTCTACTTGTTGGAGGTGATGAAGGA
GCAAGAATCCTTTGTTATCGGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR023574Ribosomal_uL4_dom_sf
IPR045240Ribosomal_uL4_euk/arch
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation