Cc_v2.0_09884.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Cc_v2.0_09884.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SKC7|A0A151SKC7_CAJCA (Cyclic nucleotide-gated ion channel 4 OS=Cajanus cajan OX=3821 GN=KK1_001513 PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 1.315e-41 Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASH + Sbjct: 192 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAA 265
BLAST of Cc_v2.0_09884.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0B2SSJ6|A0A0B2SSJ6_GLYSO (Cyclic nucleotide-gated ion channel 4 OS=Glycine soja OX=3848 GN=glysoja_036617 PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 4.120e-40 Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 IVLWVAIPSLLEKGSV LVMTVFLIIFLFQYLPKI+HSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASH + Sbjct: 89 IVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAA 162
BLAST of Cc_v2.0_09884.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445KFF7|A0A445KFF7_GLYSO (Cyclic nucleotide-gated ion channel 4 OS=Glycine soja OX=3848 GN=D0Y65_015945 PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 4.165e-40 Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 IVLWVAIPSLLEKGSV LVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASH + Sbjct: 199 IVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAA 272
BLAST of Cc_v2.0_09884.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1KEI2|I1KEI2_SOYBN (Cyclic nucleotide-binding domain-containing protein OS=Glycine max OX=3847 GN=100796761 PE=3 SV=2) HSP 1 Score: 154.451 bits (389), Expect = 4.165e-40 Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 IVLWVAIPSLLEKGSV LVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASH + Sbjct: 199 IVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAA 272
BLAST of Cc_v2.0_09884.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6LFV5|A0A4D6LFV5_VIGUN (Cyclic nucleotide gated channel OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g1924 PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 5.313e-40 Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 IVLWVAIPSLLEKGSV LVMTVFLIIFLFQYLPKI+HSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASH + Sbjct: 187 IVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAA 260
BLAST of Cc_v2.0_09884.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA87B974|A0AA87B974_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS30953 PE=4 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 8.600e-40 Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASH 170 IVLWVAIPSLLEKGSV LVMTVFLIIFLFQYLPKI+HSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASH Sbjct: 187 IVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASH 258
BLAST of Cc_v2.0_09884.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3TJQ3|A0A1S3TJQ3_VIGRR (Cyclic nucleotide-gated ion channel 4 OS=Vigna radiata var. radiata OX=3916 GN=LOC106756202 PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 8.901e-40 Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 IVLWVAIPSLLEKGSV LVMTVFLIIFLFQYLPKI+HSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASH + Sbjct: 183 IVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAA 256
BLAST of Cc_v2.0_09884.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9V4W4|A0A0L9V4W4_PHAAN (Cyclic nucleotide-gated ion channel 4 OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0246010 PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 9.611e-40 Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 IVLWVAIPSLLEKGSV LVMTVFLIIFLFQYLPKI+HSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASH + Sbjct: 187 IVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAA 260
BLAST of Cc_v2.0_09884.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445HPZ5|A0A445HPZ5_GLYSO (Cyclic nucleotide-gated ion channel 4 isoform A OS=Glycine soja OX=3848 GN=D0Y65_034252 PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.062e-39 Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 IVLWVAIPSLLEKGSV LVMTVFLIIFLFQYLPKI+HSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASH + Sbjct: 198 IVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAA 271
BLAST of Cc_v2.0_09884.1 vs. ExPASy TrEMBL (2024)
Match: tr|K7LUJ8|K7LUJ8_SOYBN (Cyclic nucleotide-binding domain-containing protein OS=Glycine max OX=3847 GN=100783341 PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.062e-39 Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 IVLWVAIPSLLEKGSV LVMTVFLIIFLFQYLPKI+HSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASH + Sbjct: 198 IVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAA 271
BLAST of Cc_v2.0_09884.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q94AS9|CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana OX=3702 GN=CNGC4 PE=2 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 7.863e-28 Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 +VLWV IPSLL++GSV LV++V L+ FLFQYLPKI+HS+ HLRR LSGYIFGTVWWGIALNMIAYFVA+H + Sbjct: 202 VVLWVVIPSLLKRGSVTLVVSVLLVTFLFQYLPKIYHSIRHLRRNATLSGYIFGTVWWGIALNMIAYFVAAHAA 275
BLAST of Cc_v2.0_09884.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|O65718|CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana OX=3702 GN=CNGC2 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.774e-19 Identity = 43/73 (58.90%), Postives = 60/73 (82.19%), Query Frame = 0 Query: 100 VLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 V W+ +P L+ + V L+MT+ L+IFLFQ+LPKI+H +C +RR Q ++GYIFGT+WWG ALN+IAYF+ASHV+ Sbjct: 235 VFWLVVPKLIREEKVKLIMTILLLIFLFQFLPKIYHCICLMRRMQKVTGYIFGTIWWGFALNLIAYFIASHVA 307
BLAST of Cc_v2.0_09884.1 vs. Araport11
Match: | (Symbols: DND2, HLM1, ATCNGC4, CNGC4 | cyclic nucleotide-gated cation channel 4, "DEFENSE, NO DEATH 2" | chr5:22025684-22029971 REVERSE LENGTH=694) HSP 1 Score: 112.464 bits (280), Expect = 7.954e-29 Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 +VLWV IPSLL++GSV LV++V L+ FLFQYLPKI+HS+ HLRR LSGYIFGTVWWGIALNMIAYFVA+H + Sbjct: 202 VVLWVVIPSLLKRGSVTLVVSVLLVTFLFQYLPKIYHSIRHLRRNATLSGYIFGTVWWGIALNMIAYFVAAHAA 275
BLAST of Cc_v2.0_09884.1 vs. Araport11
Match: | (Symbols: DND2, HLM1, ATCNGC4, CNGC4 | cyclic nucleotide-gated cation channel 4, "DEFENSE, NO DEATH 2" | chr5:22025684-22029971 REVERSE LENGTH=694) HSP 1 Score: 112.464 bits (280), Expect = 7.954e-29 Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 +VLWV IPSLL++GSV LV++V L+ FLFQYLPKI+HS+ HLRR LSGYIFGTVWWGIALNMIAYFVA+H + Sbjct: 202 VVLWVVIPSLLKRGSVTLVVSVLLVTFLFQYLPKIYHSIRHLRRNATLSGYIFGTVWWGIALNMIAYFVAAHAA 275
BLAST of Cc_v2.0_09884.1 vs. Araport11
Match: | (Symbols: DND2, HLM1, ATCNGC4, CNGC4 | cyclic nucleotide-gated cation channel 4, "DEFENSE, NO DEATH 2" | chr5:22025684-22029971 REVERSE LENGTH=694) HSP 1 Score: 112.464 bits (280), Expect = 7.954e-29 Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 +VLWV IPSLL++GSV LV++V L+ FLFQYLPKI+HS+ HLRR LSGYIFGTVWWGIALNMIAYFVA+H + Sbjct: 202 VVLWVVIPSLLKRGSVTLVVSVLLVTFLFQYLPKIYHSIRHLRRNATLSGYIFGTVWWGIALNMIAYFVAAHAA 275
BLAST of Cc_v2.0_09884.1 vs. Araport11
Match: | (Symbols: DND2, HLM1, ATCNGC4, CNGC4 | cyclic nucleotide-gated cation channel 4, "DEFENSE, NO DEATH 2" | chr5:22025684-22029971 REVERSE LENGTH=689) HSP 1 Score: 112.079 bits (279), Expect = 8.396e-29 Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 +VLWV IPSLL++GSV LV++V L+ FLFQYLPKI+HS+ HLRR LSGYIFGTVWWGIALNMIAYFVA+H + Sbjct: 202 VVLWVVIPSLLKRGSVTLVVSVLLVTFLFQYLPKIYHSIRHLRRNATLSGYIFGTVWWGIALNMIAYFVAAHAA 275
BLAST of Cc_v2.0_09884.1 vs. Araport11
Match: | (Symbols: CNGC2, DND1, ATCNGC2 | CYCLIC NUCLEOTIDE GATED CHANNEL 2, DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE-GATED CHANNEL 2 | chr5:5003460-5006512 REVERSE LENGTH=725) HSP 1 Score: 87.4261 bits (215), Expect = 3.431e-20 Identity = 43/73 (58.90%), Postives = 60/73 (82.19%), Query Frame = 0 Query: 100 VLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 V W+ +P L+ + V L+MT+ L+IFLFQ+LPKI+H +C +RR Q ++GYIFGT+WWG ALN+IAYF+ASHV+ Sbjct: 234 VFWLVVPKLIREEKVKLIMTILLLIFLFQFLPKIYHCICLMRRMQKVTGYIFGTIWWGFALNLIAYFIASHVA 306
BLAST of Cc_v2.0_09884.1 vs. Araport11
Match: | (Symbols: CNGC2, DND1, ATCNGC2 | CYCLIC NUCLEOTIDE GATED CHANNEL 2, DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE-GATED CHANNEL 2 | chr5:5003460-5006763 REVERSE LENGTH=726) HSP 1 Score: 87.4261 bits (215), Expect = 3.815e-20 Identity = 43/73 (58.90%), Postives = 60/73 (82.19%), Query Frame = 0 Query: 100 VLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVS 172 V W+ +P L+ + V L+MT+ L+IFLFQ+LPKI+H +C +RR Q ++GYIFGT+WWG ALN+IAYF+ASHV+ Sbjct: 235 VFWLVVPKLIREEKVKLIMTILLLIFLFQFLPKIYHCICLMRRMQKVTGYIFGTIWWGFALNLIAYFIASHVA 307
BLAST of Cc_v2.0_09884.1 vs. Araport11
Match: | (Symbols: ATCNGC15, CNGC15 | cyclic nucleotide-gated channel 15 | chr2:12049989-12052453 FORWARD LENGTH=678) HSP 1 Score: 49.6766 bits (117), Expect = 3.334e-7 Identity = 26/74 (35.14%), Postives = 42/74 (56.76%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVML-VMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHV 171 +++W+ IP+L +GS M V I +FQY+P++F R+ +G + T W G A N++ Y +ASHV Sbjct: 184 VLIWIIIPNL--RGSPMTNTKNVLRFIIIFQYVPRMFLIFPLSRQIIKATGVVTETAWAGAAYNLMLYMLASHV 255
BLAST of Cc_v2.0_09884.1 vs. Araport11
Match: | (Symbols: ATCNGC15, CNGC15 | cyclic nucleotide-gated channel 15 | chr2:12050186-12052453 FORWARD LENGTH=638) HSP 1 Score: 49.6766 bits (117), Expect = 3.726e-7 Identity = 26/74 (35.14%), Postives = 42/74 (56.76%), Query Frame = 0 Query: 99 IVLWVAIPSLLEKGSVML-VMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHV 171 +++W+ IP+L +GS M V I +FQY+P++F R+ +G + T W G A N++ Y +ASHV Sbjct: 144 VLIWIIIPNL--RGSPMTNTKNVLRFIIIFQYVPRMFLIFPLSRQIIKATGVVTETAWAGAAYNLMLYMLASHV 215 The following BLAST results are available for this feature:
BLAST of Cc_v2.0_09884.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Cc_v2.0_09884.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot ) Total hits: 2 Position : 0 Zoom : x 1
BLAST of Cc_v2.0_09884.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11) Total hits: 8 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >drCajCajn.Asha.2.0.Cc_v2.0_09884.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_09884.1; Name=Cc_v2.0_09884.1; organism=Cajanus cajan; type=mRNA; length=549bpback to top protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_09884.1 >drCajCajn.Asha.2.0.Cc_v2.0_09884.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_09884.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_09884.1; organism=Cajanus cajan; type=polypeptide; length=182bpback to top mRNA from alignment at CcLG04_v2.0:15158677..15163357+ Legend: CDSexonpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>drCajCajn.Asha.2.0.Cc_v2.0_09884.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_09884.1; Name=Cc_v2.0_09884.1; organism=Cajanus cajan; type=mRNA; length=4681bp; location=Sequence derived from: CcLG04_v2.0:15158677..15163357+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at CcLG04_v2.0:15158677..15163357+ >drCajCajn.Asha.2.0.Cc_v2.0_09884.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_09884.1; Name=Cc_v2.0_09884.1; organism=Cajanus cajan; type=CDS; length=549bp; location=Sequence derived from: CcLG04_v2.0:15158677..15163357+ (Cajanus cajanback to top |