Cc_v2.0_09902.1

Transcript Overview
NameCc_v2.0_09902.1
Unique NamedrCajCajn.Asha.2.0.Cc_v2.0_09902.1
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length762
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CcLG04_v2.0chromosomeCcLG04_v2.0:15398613..15400798 +Cajanus cajan cv. Asha genome v2.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anccaL0094Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL080Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0254Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0730Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL626Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL1030Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL1080Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carccaL045Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccapsR423Pisum sativum Cameor genome v1aPisum sativum
ccapsR467Pisum sativum Cameor genome v1aPisum sativum
carccaL480Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccavrvR394Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavfhR388Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR445Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavfhR451Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccavssR413Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavssR428Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavuR369Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavuR371Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR476Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavumR484Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR387Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccccaL1136Cajanus cajan Asha genome v1.0Cajanus cajan
ccavunR318Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccavunR319Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccavunR332Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR455Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR487Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
evm.Ca_v2.0_17418Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
Vigun11g077500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Va08G040680.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
PvulFLAVERTChr11.880Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-TanjilR_11795Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_022778671.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg44389.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.011G140050.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vum_06G00687.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Psat7g161600.1Pisum sativum Cameor genome v1aPisum sativum
jg8576.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun11g077500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Hedin2.R1.6g081520.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
evm.Ca_v2.0_02138Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-KK1_031257Cajanus cajan Asha genome v1.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cc_v2.0_09902drCajCajn.Asha.2.0.Cc_v2.0_09902Cajanus cajangene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.Cc_v2.0_09902.1drCajCajn.Asha.2.0.cds.Cc_v2.0_09902.1Cajanus cajanCDS
cds.Cc_v2.0_09902.1drCajCajn.Asha.2.0.cds.Cc_v2.0_09902.1_2Cajanus cajanCDS
cds.Cc_v2.0_09902.1drCajCajn.Asha.2.0.cds.Cc_v2.0_09902.1_3Cajanus cajanCDS
cds.Cc_v2.0_09902.1drCajCajn.Asha.2.0.cds.Cc_v2.0_09902.1_4Cajanus cajanCDS
cds.Cc_v2.0_09902.1drCajCajn.Asha.2.0.cds.Cc_v2.0_09902.1_5Cajanus cajanCDS
cds.Cc_v2.0_09902.1drCajCajn.Asha.2.0.cds.Cc_v2.0_09902.1_6Cajanus cajanCDS
cds.Cc_v2.0_09902.1drCajCajn.Asha.2.0.cds.Cc_v2.0_09902.1_7Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_09902.1.exon1drCajCajn.Asha.2.0.Cc_v2.0_09902.1.exon1Cajanus cajanexon
Cc_v2.0_09902.1.exon2drCajCajn.Asha.2.0.Cc_v2.0_09902.1.exon2Cajanus cajanexon
Cc_v2.0_09902.1.exon3drCajCajn.Asha.2.0.Cc_v2.0_09902.1.exon3Cajanus cajanexon
Cc_v2.0_09902.1.exon4drCajCajn.Asha.2.0.Cc_v2.0_09902.1.exon4Cajanus cajanexon
Cc_v2.0_09902.1.exon5drCajCajn.Asha.2.0.Cc_v2.0_09902.1.exon5Cajanus cajanexon
Cc_v2.0_09902.1.exon6drCajCajn.Asha.2.0.Cc_v2.0_09902.1.exon6Cajanus cajanexon
Cc_v2.0_09902.1.exon7drCajCajn.Asha.2.0.Cc_v2.0_09902.1.exon7Cajanus cajanexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drCajCajn.Asha.2.0.Cc_v2.0_09902.1drCajCajn.Asha.2.0.Cc_v2.0_09902.1Cajanus cajanpolypeptide
drCajCajn.Asha.2.0.Cc_v2.0_09902.1drCajCajn.Asha.2.0.Cc_v2.0_09902.1-proteinCajanus cajanpolypeptide


Homology
[Close]
BLAST of Cc_v2.0_09902.1 vs. ExPASy TrEMBL (2024)
Match: tr|K7LUL2|K7LUL2_SOYBN (Pentacotripeptide-repeat region of PRORP domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_12G135500 PE=4 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 5.906e-72
Identity = 131/194 (67.53%), Postives = 143/194 (73.71%), Query Frame = 0 
Query:    7 PDIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAILLCKQLKDKFENDEIVMESL-----------------------------------------MMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            P IPNKSLNEIKSVLVS LASHGQLSEALLVYEEIKKAG+NL PKAVI+LIEE T+FNGELDGLLLLL+E+SDLDYWVDGCFKVIMYCIR KNLSSAI+L KQLKDKF+NDEIV E+L                                         ++ +CANAGDLNNARLIWREYE+AGFPYNV  YLR
Sbjct:   23 PIIPNKSLNEIKSVLVSALASHGQLSEALLVYEEIKKAGHNLRPKAVITLIEELTKFNGELDGLLLLLEEISDLDYWVDGCFKVIMYCIRNKNLSSAIVLFKQLKDKFKNDEIVTEALFDAVFSLIAVSEFTHLQIGLDLLWAIKDELGLMASRQCLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLR 216
[Close]
BLAST of Cc_v2.0_09902.1 vs. ExPASy TrEMBL (2024)
Match: tr|K7LUK9|K7LUK9_SOYBN (Pentacotripeptide-repeat region of PRORP domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_12G135500 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 3.721e-71
Identity = 131/194 (67.53%), Postives = 143/194 (73.71%), Query Frame = 0 
Query:    7 PDIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAILLCKQLKDKFENDEIVMESL-----------------------------------------MMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            P IPNKSLNEIKSVLVS LASHGQLSEALLVYEEIKKAG+NL PKAVI+LIEE T+FNGELDGLLLLL+E+SDLDYWVDGCFKVIMYCIR KNLSSAI+L KQLKDKF+NDEIV E+L                                         ++ +CANAGDLNNARLIWREYE+AGFPYNV  YLR
Sbjct:   23 PIIPNKSLNEIKSVLVSALASHGQLSEALLVYEEIKKAGHNLRPKAVITLIEELTKFNGELDGLLLLLEEISDLDYWVDGCFKVIMYCIRNKNLSSAIVLFKQLKDKFKNDEIVTEALFDAVFSLIAVSEFTHLQIGLDLLWAIKDELGLMASRQCLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLR 216
[Close]
BLAST of Cc_v2.0_09902.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9C6WH24|A0A9C6WH24_ARADU (Pentatricopeptide repeat-containing protein At4g04790, mitochondrial isoform X2 OS=Arachis duranensis OX=130453 GN=LOC107477993 PE=4 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.914e-71
Identity = 122/194 (62.89%), Postives = 139/194 (71.65%), Query Frame = 0 
Query:    7 PDIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAILLCKQLKDKFENDEIVMESL-----------------------------------------MMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            P+IP KSLNEIKSVLVS LASHGQLSEALLVYEEI KAGYNLEPKAVISLIEEFT+F GELDG+L+LL E+SDLDYWVDGCF+VI+YCI  K+LSSAI L K+LKDKFE+DE+V+E L                                         ++ +C NAGDL+NARLIWREYE+AGFPYNV  YLR
Sbjct:  333 PNIPAKSLNEIKSVLVSALASHGQLSEALLVYEEINKAGYNLEPKAVISLIEEFTKFKGELDGMLMLLTELSDLDYWVDGCFRVIIYCIHNKHLSSAIDLFKKLKDKFESDELVLEVLFDEVFAAIATSESSNLQIGLDLLWAVKNELGLVPSRQCLDFLLSACTNAGDLSNARLIWREYEVAGFPYNVLSYLR 526
[Close]
BLAST of Cc_v2.0_09902.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0B2SNY7|A0A0B2SNY7_GLYSO (Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja OX=3848 GN=glysoja_032645 PE=4 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.350e-70
Identity = 129/193 (66.84%), Postives = 145/193 (75.13%), Query Frame = 0 
Query:    8 DIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAILLCKQLKDKFENDEIVMESL-----------------------------------------MMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            +IPNKSLNEIKSVLVS LASHGQLSEALLVYEEIKKAG+NLEPKAVI+LIEEFT+FNGELDGLLLLL+E++D+DYWVDGCFKVIMYCIR KNLSS ILL KQLKDKF+ND++VME+L                                         ++ +CANAGDLNNARLIWREYE+AGFPYNV  YLR
Sbjct:   45 NIPNKSLNEIKSVLVSALASHGQLSEALLVYEEIKKAGHNLEPKAVITLIEEFTKFNGELDGLLLLLEEMNDVDYWVDGCFKVIMYCIRNKNLSSTILLFKQLKDKFKNDDLVMEALFDAVFSLIASSESSHLQIGLDLLWAIKDELGLMPSRQCLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLR 237
[Close]
BLAST of Cc_v2.0_09902.1 vs. ExPASy TrEMBL (2024)
Match: tr|C6TMM3|C6TMM3_SOYBN (Pentacotripeptide-repeat region of PRORP domain-containing protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.661e-69
Identity = 131/194 (67.53%), Postives = 143/194 (73.71%), Query Frame = 0 
Query:    7 PDIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAILLCKQLKDKFENDEIVMESL-----------------------------------------MMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            P IPNKSLNEIKSVLVS LASHGQLSEALLVYEEIKKAG+NL PKAVI+LIEE T+FNGELDGLLLLL+E+SDLDYWVDGCFKVIMYCIR KNLSSAI+L KQLKDKF+NDEIV E+L                                         ++ +CANAGDLNNARLIWREYE+AGFPYNV  YLR
Sbjct:  173 PIIPNKSLNEIKSVLVSALASHGQLSEALLVYEEIKKAGHNLRPKAVITLIEELTKFNGELDGLLLLLEEISDLDYWVDGCFKVIMYCIRNKNLSSAIVLFKQLKDKFKNDEIVTEALFDAVFSLIAVSEFTHLQIGLDLLWAIKDELGLMASRQCLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLR 366
[Close]
BLAST of Cc_v2.0_09902.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6P4CLG0|A0A6P4CLG0_ARADU (Pentatricopeptide repeat-containing protein At4g04790, mitochondrial isoform X1 OS=Arachis duranensis OX=130453 GN=LOC107477993 PE=4 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 1.737e-69
Identity = 122/194 (62.89%), Postives = 139/194 (71.65%), Query Frame = 0 
Query:    7 PDIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAILLCKQLKDKFENDEIVMESL-----------------------------------------MMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            P+IP KSLNEIKSVLVS LASHGQLSEALLVYEEI KAGYNLEPKAVISLIEEFT+F GELDG+L+LL E+SDLDYWVDGCF+VI+YCI  K+LSSAI L K+LKDKFE+DE+V+E L                                         ++ +C NAGDL+NARLIWREYE+AGFPYNV  YLR
Sbjct:  490 PNIPAKSLNEIKSVLVSALASHGQLSEALLVYEEINKAGYNLEPKAVISLIEEFTKFKGELDGMLMLLTELSDLDYWVDGCFRVIIYCIHNKHLSSAIDLFKKLKDKFESDELVLEVLFDEVFAAIATSESSNLQIGLDLLWAVKNELGLVPSRQCLDFLLSACTNAGDLSNARLIWREYEVAGFPYNVLSYLR 683
[Close]
BLAST of Cc_v2.0_09902.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445DZ66|A0A445DZ66_ARAHY (Pentacotripeptide-repeat region of PRORP domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g014995 PE=4 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.419e-69
Identity = 122/194 (62.89%), Postives = 139/194 (71.65%), Query Frame = 0 
Query:    7 PDIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAILLCKQLKDKFENDEIVMESL-----------------------------------------MMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            P+IP KSLNEIKSVLVS LASHGQLSEALLVYEEI KAGYNLEPKAVISLIEEFT+F GELDG+L+LL E+SDLDYWVDGCF+VI+YCI  K+LSSAI L K+LKDKFE+DE+V+E L                                         ++ +C NAGDL+NARLIWREYE+AGFPYNV  YLR
Sbjct:  592 PNIPAKSLNEIKSVLVSALASHGQLSEALLVYEEINKAGYNLEPKAVISLIEEFTKFKGELDGMLMLLTELSDLDYWVDGCFRVIIYCIHNKHLSSAIDLFKKLKDKFESDELVLEVLFDEVFAAIATSESSNLQIGLDLLWAVKNELGLVPSRQCLDFLLSACTNAGDLSNARLIWREYEVAGFPYNVLSYLR 785
[Close]
BLAST of Cc_v2.0_09902.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445A4C6|A0A445A4C6_ARAHY (Pentacotripeptide-repeat region of PRORP domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g066549 PE=4 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.898e-69
Identity = 121/194 (62.37%), Postives = 139/194 (71.65%), Query Frame = 0 
Query:    7 PDIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAILLCKQLKDKFENDEIVMESL-----------------------------------------MMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            P+IP KSLNEIKSVLVS LASHGQLSEALLVYEEI KAGYNLEPKAVISLIEEFT+F GELDG+L+LL E+SDLDYWVDGCF+VI+YC+  K+LSSAI L K+LKDKFE+DE+V+E L                                         ++ +C NAGDL+NARLIWREYE+AGFPYNV  YLR
Sbjct:  592 PNIPAKSLNEIKSVLVSALASHGQLSEALLVYEEINKAGYNLEPKAVISLIEEFTKFKGELDGMLMLLTELSDLDYWVDGCFRVIIYCVHNKHLSSAIDLFKKLKDKFESDELVLEVLFDEVFAAIATSESSNLQIGLDLLWAVKNELGLVPSRQCLDFLLSACTNAGDLSNARLIWREYEVAGFPYNVLSYLR 785
[Close]
BLAST of Cc_v2.0_09902.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445DZB7|A0A445DZB7_ARAHY (Pentacotripeptide-repeat region of PRORP domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g014995 PE=4 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 2.937e-68
Identity = 122/194 (62.89%), Postives = 139/194 (71.65%), Query Frame = 0 
Query:    7 PDIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAILLCKQLKDKFENDEIVMESL-----------------------------------------MMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            P+IP KSLNEIKSVLVS LASHGQLSEALLVYEEI KAGYNLEPKAVISLIEEFT+F GELDG+L+LL E+SDLDYWVDGCF+VI+YCI  K+LSSAI L K+LKDKFE+DE+V+E L                                         ++ +C NAGDL+NARLIWREYE+AGFPYNV  YLR
Sbjct:  681 PNIPAKSLNEIKSVLVSALASHGQLSEALLVYEEINKAGYNLEPKAVISLIEEFTKFKGELDGMLMLLTELSDLDYWVDGCFRVIIYCIHNKHLSSAIDLFKKLKDKFESDELVLEVLFDEVFAAIATSESSNLQIGLDLLWAVKNELGLVPSRQCLDFLLSACTNAGDLSNARLIWREYEVAGFPYNVLSYLR 874
[Close]
BLAST of Cc_v2.0_09902.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A371HUM9|A0A371HUM9_MUCPR (Putative multidrug resistance protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_09510 PE=4 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 6.325e-68
Identity = 134/194 (69.07%), Postives = 144/194 (74.23%), Query Frame = 0 
Query:    7 PDIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAILLCKQLKDKFENDEIVMESL-----------------------------------------MMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            P+IP+KSLNEIKSVLVS LASHGQLSEAL+VYEEIKK G+NLEPKAVISLIEEFTQFNGELD LLLLLKEVSDLDYWVDGCFKVIMY IR KNLSSAILL KQLKDKFENDEIVME+L                                         ++ +CANAGDLNNARLIWREYE+AG+PYNV  YLR
Sbjct: 1835 PNIPSKSLNEIKSVLVSALASHGQLSEALIVYEEIKKGGHNLEPKAVISLIEEFTQFNGELDELLLLLKEVSDLDYWVDGCFKVIMYSIRNKNLSSAILLFKQLKDKFENDEIVMEALFDAVFSLIAGSESTHLQIGLDLLWAIKDELGLMTSRQCLDFLLSACANAGDLNNARLIWREYEVAGYPYNVLSYLR 2028
[Close]
BLAST of Cc_v2.0_09902.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|O49711|PP335_ARATH (Pentatricopeptide repeat-containing protein At4g21880, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g21880 PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 2.368e-27
Identity = 70/194 (36.08%), Postives = 103/194 (53.09%), Query Frame = 0 
Query:    8 DIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAIL-LCKQLKDKFENDEIVME-----------------------------------------SLMMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            ++P K  NE+KSVL+S LAS+G ++EAL +YEE+KK    +EPKA++SLIE  +  N EL  L+ L  E+ D  +W+DG FK+I++ +R  N SS+IL L +Q K+    D++ +E                                           ++ +C NA D  +A L+W EY+ A  PYNV  YLR
Sbjct:  592 EVPAKDHNELKSVLISALASNGNITEALSIYEEMKKLRCPVEPKAILSLIEN-SDSNAELGTLVELTHELRDSKFWIDGFFKIIVFAVR-NNRSSSILDLLEQTKNHLSKDDVGVEYWFEEVFKSIAETESSDVKVGLDLVSFMKEELELCPSRKCLDFLLHACVNAKDKQSALLVWEEYQCAELPYNVINYLR 783
[Close]
BLAST of Cc_v2.0_09902.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6NQ81|PP304_ARATH (Pentatricopeptide repeat-containing protein At4g04790, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g04790 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 3.035e-25
Identity = 63/194 (32.47%), Postives = 102/194 (52.58%), Query Frame = 0 
Query:    7 PDIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAILLCKQLKDKFENDEIVMES-----------------------------------------LMMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            PD+P  + NE+KSVL+S LAS G+ ++AL +YEE++KA  +++PK++ISLI E++   GEL  L+ L  ++ D   W+DG F++I++ +R K  S  + L K+ K +     I +E+                                          ++ +C NA DL +  L+W+EY+ A FP NV  +LR
Sbjct:  571 PDVPAINQNELKSVLISALASRGKWADALHIYEEMRKAECHVDPKSIISLI-EYSDSKGELSTLVQLADDLQDDTSWIDGFFRMILFAVRNKKSSDIVDLLKRNKVRLLKKGIPVEAHFDEVFWAIAETEPSKVHLGMDLLRFMKDELGFVPSRKCLDFLLHACVNAKDLEHGLLVWKEYQSAAFPCNVLSFLR 763
[Close]
BLAST of Cc_v2.0_09902.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:11605156-11610651 FORWARD LENGTH=843)

HSP 1 Score: 113.62 bits (283), Expect = 2.394e-28
Identity = 70/194 (36.08%), Postives = 103/194 (53.09%), Query Frame = 0 
Query:    8 DIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAIL-LCKQLKDKFENDEIVME-----------------------------------------SLMMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            ++P K  NE+KSVL+S LAS+G ++EAL +YEE+KK    +EPKA++SLIE  +  N EL  L+ L  E+ D  +W+DG FK+I++ +R  N SS+IL L +Q K+    D++ +E                                           ++ +C NA D  +A L+W EY+ A  PYNV  YLR
Sbjct:  592 EVPAKDHNELKSVLISALASNGNITEALSIYEEMKKLRCPVEPKAILSLIEN-SDSNAELGTLVELTHELRDSKFWIDGFFKIIVFAVR-NNRSSSILDLLEQTKNHLSKDDVGVEYWFEEVFKSIAETESSDVKVGLDLVSFMKEELELCPSRKCLDFLLHACVNAKDKQSALLVWEEYQCAELPYNVINYLR 783
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BLAST of Cc_v2.0_09902.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:11605363-11610651 FORWARD LENGTH=799)

HSP 1 Score: 113.235 bits (282), Expect = 3.657e-28
Identity = 70/194 (36.08%), Postives = 103/194 (53.09%), Query Frame = 0 
Query:    8 DIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAIL-LCKQLKDKFENDEIVME-----------------------------------------SLMMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            ++P K  NE+KSVL+S LAS+G ++EAL +YEE+KK    +EPKA++SLIE  +  N EL  L+ L  E+ D  +W+DG FK+I++ +R  N SS+IL L +Q K+    D++ +E                                           ++ +C NA D  +A L+W EY+ A  PYNV  YLR
Sbjct:  548 EVPAKDHNELKSVLISALASNGNITEALSIYEEMKKLRCPVEPKAILSLIEN-SDSNAELGTLVELTHELRDSKFWIDGFFKIIVFAVR-NNRSSSILDLLEQTKNHLSKDDVGVEYWFEEVFKSIAETESSDVKVGLDLVSFMKEELELCPSRKCLDFLLHACVNAKDKQSALLVWEEYQCAELPYNVINYLR 739
[Close]
BLAST of Cc_v2.0_09902.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:2435007-2439344 REVERSE LENGTH=817)

HSP 1 Score: 107.457 bits (267), Expect = 3.006e-26
Identity = 63/194 (32.47%), Postives = 102/194 (52.58%), Query Frame = 0 
Query:    7 PDIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAILLCKQLKDKFENDEIVMES-----------------------------------------LMMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            PD+P  + NE+KSVL+S LAS G+ ++AL +YEE++KA  +++PK++ISLI E++   GEL  L+ L  ++ D   W+DG F++I++ +R K  S  + L K+ K +     I +E+                                          ++ +C NA DL +  L+W+EY+ A FP NV  +LR
Sbjct:  567 PDVPAINQNELKSVLISALASRGKWADALHIYEEMRKAECHVDPKSIISLI-EYSDSKGELSTLVQLADDLQDDTSWIDGFFRMILFAVRNKKSSDIVDLLKRNKVRLLKKGIPVEAHFDEVFWAIAETEPSKVHLGMDLLRFMKDELGFVPSRKCLDFLLHACVNAKDLEHGLLVWKEYQSAAFPCNVLSFLR 759
[Close]
BLAST of Cc_v2.0_09902.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:2435007-2439344 REVERSE LENGTH=821)

HSP 1 Score: 107.457 bits (267), Expect = 3.069e-26
Identity = 63/194 (32.47%), Postives = 102/194 (52.58%), Query Frame = 0 
Query:    7 PDIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAILLCKQLKDKFENDEIVMES-----------------------------------------LMMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            PD+P  + NE+KSVL+S LAS G+ ++AL +YEE++KA  +++PK++ISLI E++   GEL  L+ L  ++ D   W+DG F++I++ +R K  S  + L K+ K +     I +E+                                          ++ +C NA DL +  L+W+EY+ A FP NV  +LR
Sbjct:  571 PDVPAINQNELKSVLISALASRGKWADALHIYEEMRKAECHVDPKSIISLI-EYSDSKGELSTLVQLADDLQDDTSWIDGFFRMILFAVRNKKSSDIVDLLKRNKVRLLKKGIPVEAHFDEVFWAIAETEPSKVHLGMDLLRFMKDELGFVPSRKCLDFLLHACVNAKDLEHGLLVWKEYQSAAFPCNVLSFLR 763
[Close]
BLAST of Cc_v2.0_09902.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:2435007-2438728 REVERSE LENGTH=684)

HSP 1 Score: 107.071 bits (266), Expect = 4.795e-26
Identity = 63/194 (32.47%), Postives = 102/194 (52.58%), Query Frame = 0 
Query:    7 PDIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEPKAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNLSSAILLCKQLKDKFENDEIVMES-----------------------------------------LMMRSCANAGDLNNARLIWREYEIAGFPYNVKCYLR 159
            PD+P  + NE+KSVL+S LAS G+ ++AL +YEE++KA  +++PK++ISLI E++   GEL  L+ L  ++ D   W+DG F++I++ +R K  S  + L K+ K +     I +E+                                          ++ +C NA DL +  L+W+EY+ A FP NV  +LR
Sbjct:  434 PDVPAINQNELKSVLISALASRGKWADALHIYEEMRKAECHVDPKSIISLI-EYSDSKGELSTLVQLADDLQDDTSWIDGFFRMILFAVRNKKSSDIVDLLKRNKVRLLKKGIPVEAHFDEVFWAIAETEPSKVHLGMDLLRFMKDELGFVPSRKCLDFLLHACVNAKDLEHGLLVWKEYQSAAFPCNVLSFLR 626
The following BLAST results are available for this feature:
BLAST of Cc_v2.0_09902.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|K7LUL2|K7LUL2_SOYBN5.906e-7267.53Pentacotripeptide-repeat region of PRORP domain-co... [more]
tr|K7LUK9|K7LUK9_SOYBN3.721e-7167.53Pentacotripeptide-repeat region of PRORP domain-co... [more]
tr|A0A9C6WH24|A0A9C6WH24_ARADU6.914e-7162.89Pentatricopeptide repeat-containing protein At4g04... [more]
tr|A0A0B2SNY7|A0A0B2SNY7_GLYSO1.350e-7066.84Pentatricopeptide repeat-containing protein, mitoc... [more]
tr|C6TMM3|C6TMM3_SOYBN1.661e-6967.53Pentacotripeptide-repeat region of PRORP domain-co... [more]
tr|A0A6P4CLG0|A0A6P4CLG0_ARADU1.737e-6962.89Pentatricopeptide repeat-containing protein At4g04... [more]
tr|A0A445DZ66|A0A445DZ66_ARAHY4.419e-6962.89Pentacotripeptide-repeat region of PRORP domain-co... [more]
tr|A0A445A4C6|A0A445A4C6_ARAHY5.898e-6962.37Pentacotripeptide-repeat region of PRORP domain-co... [more]
tr|A0A445DZB7|A0A445DZB7_ARAHY2.937e-6862.89Pentacotripeptide-repeat region of PRORP domain-co... [more]
tr|A0A371HUM9|A0A371HUM9_MUCPR6.325e-6869.07Putative multidrug resistance protein (Fragment) O... [more]
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BLAST of Cc_v2.0_09902.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot )
Total hits: 2
Match NameE-valueIdentityDescription
sp|O49711|PP335_ARATH2.368e-2736.08Pentatricopeptide repeat-containing protein At4g21... [more]
sp|Q6NQ81|PP304_ARATH3.035e-2532.47Pentatricopeptide repeat-containing protein At4g04... [more]
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BLAST of Cc_v2.0_09902.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11)
Total hits: 5
Match NameE-valueIdentityDescription
|2.394e-2836.08Symbols: no symbol available | no full name availa... [more]
|3.657e-2836.08Symbols: no symbol available | no full name availa... [more]
|3.006e-2632.47Symbols: no symbol available | no full name availa... [more]
|3.069e-2632.47Symbols: no symbol available | no full name availa... [more]
|4.795e-2632.47Symbols: no symbol available | no full name availa... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 19..159
e-value: 6.4E-6
score: 27.8
NoneNo IPR availablePANTHERPTHR47262OS02G0132600 PROTEINcoord: 125..159

Sequences
The following sequences are available for this feature:

mRNA sequence

>drCajCajn.Asha.2.0.Cc_v2.0_09902.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_09902.1; Name=Cc_v2.0_09902.1; organism=Cajanus cajan; type=mRNA; length=762bp
ATGGACAGAACATCTTATCCAGACATACCAAACAAGAGCTTAAATGAAAT
CAAGAGTGTACTTGTCTCAACTCTTGCATCACATGGGCAATTGTCCGAGG
CTCTTCTTGTATATGAGGAGATTAAGAAAGCTGGATATAATTTGGAGCCA
AAAGCTGTTATAAGTCTTATTGAGGAGTTCACTCAATTCAATGGGGAATT
GGATGGGCTACTGCTTCTACTTAAGGAAGTGAGTGATCTAGACTATTGGG
TTGATGGTTGCTTCAAGGTTATCATGTATTGTATACGGATCAAGAATTTG
AGTTCTGCTATTCTCTTGTGCAAGCAACTCAAGGATAAGTTTGAAAATGA
TGAAATAGTAATGGAATCTCTTATGATGCGTTCTTGTGCGAATGCCGGAG
ATTTGAATAATGCTCGCTTGATTTGGAGAGAATACGAGATTGCTGGATTT
CCTTACAATGTAAAATGTTACTTGAGagctgatccgccggCTCCCCGCTC
TCGTGGAGTTGCCGGACCTTGTCGGCATGAAGTCGCGCGGCAGTGCAACG
CTGCAGCGGCCGAGGATCCCGAGGAGCTCGTCGCGGAAGCGGTCGTCGAT
GGAGATGTCGCGCTCGTTGACGGTGACGCGGAGGCCGCGGAGGATGGATC
GGACGGCGCGACAGTCGTCGAAGGTGCAGGGAACGATGCAGAGGGAGGTG
AAGTAGACGATGACGCCTTGGTCGAGGCCAGGCGGCAATGTGGCGGGGGA
GGCGGCGCGTGA
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protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_09902.1

>drCajCajn.Asha.2.0.Cc_v2.0_09902.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_09902.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_09902.1; organism=Cajanus cajan; type=polypeptide; length=253bp
MDRTSYPDIPNKSLNEIKSVLVSTLASHGQLSEALLVYEEIKKAGYNLEP
KAVISLIEEFTQFNGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIRIKNL
SSAILLCKQLKDKFENDEIVMESLMMRSCANAGDLNNARLIWREYEIAGF
PYNVKCYLRADPPAPRSRGVAGPCRHEVARQCNAAAAEDPEELVAEAVVD
GDVALVDGDAEAAEDGSDGATVVEGAGNDAEGGEVDDDALVEARRQCGGG
GGA
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mRNA from alignment at CcLG04_v2.0:15398613..15400798+

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>drCajCajn.Asha.2.0.Cc_v2.0_09902.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_09902.1; Name=Cc_v2.0_09902.1; organism=Cajanus cajan; type=mRNA; length=2186bp; location=Sequence derived from: CcLG04_v2.0:15398613..15400798+ (Cajanus cajan
ATGGACAGAACATCTTGTAAATCACCTGTTTCTTCAATATTGGTATAGAG
CATAAGTTGTGTTTCGTATTGCAAGTACTTTTAGATCCAGACATACCAAA
CAAGAGCTTAAATGAAATCAAGAGTGTACTTGTCTCAACTCTTGCATCAC
ATGGGCAATTGTCCGAGGCTCTTCTTGTATATGAGGAGATTAAGAAAGCT
GGATATAATTTGGAGCCAAAAGCTGTTATAAGTCTTATTGTAAGGTTTTG
TATTAGTGGTTTGTATATCAATCATCTACCTTCAACTTTATAATTAGTTA
CTCGACATTCTTAGGAGGAGTTCACTCAATTCAATGGGGAATTGGATGGG
CTACTGCTTCTACTTAAGGAAGTGAGTGATCTAGACTATTGGGTTGATGG
TTGCTTCAAGGTTATCATGTATTGTATACGGATCAAGAATTTGAGGTTTG
ATGTTTTACCCCTCCCATATCAAATTTGTTTGTATTCTGCAAGTTGCTTA
TCTTGATACTTGAATTTTTGGGTCAGTTCTGCTATTCTCTTGTGCAAGCA
ACTCAAGGATAAGTTTGAAAATGATGAAATAGTAATGGAATCTCTTATGA
TGCGGTGAGTTCTCGTTCTGTCCTACTTTAATTTTAGACATGTTTTGCCC
TTTTCATCACAACTGACAAGTGTTTTTGTGTCTGTGCAGGTATTTTCTCT
AATTGCAGCATCTGAGTCCACTCATTTACAGATTGGCCTAGACTTGCTTT
TCTTCACGACAGTGTCTTGATTTTCTTCTAAGTTCTTGTGCGAATGCCGG
AGATTTGAATAATGCTCGCTTGATTTGGAGAGAATACGAGATTGCTGGAT
TTCCTTACAATGTAAAATGTTACTTGAGGTAAGTTGTAAGCCTCTCCCTG
CTTTTCCCTAACCTTGTATGAGTTTTTATTCAGTATCTATCTCTGTCGaa
tttggatcctctcctgcaatattctctctccagcctctttccaacaacat
taataactgttcttaccgaaaatatgctgtagagctgatccgccgggtaa
gatcggtgagcctcctAAAAAACAAGCAGTTGTATTTCAGTTTTTTTTTA
ATAGTTTGTTCATGTAGCAATTCATTATGTAATATTTTAAACTTAACATT
AATTATAAACATCATATTAAAAAATATAAAATATAAAAATATGCTATAAA
TTTTAAATATTTTAAAATTATTACAATTTAAAAATCTAATTCACATTCAT
TGTAAAAATATAAAAAATCATTGTAAAAACTAAAATTAAATAACTTAGTT
AAAAAAAGACTATAGTTAATAATTTAATGTAGAATTTATTTATAAAAAAA
AATTGTTGAAAAAACTGAAAAGAAATAATAAAATAAAATCCGTTGAAATC
GCAAATCTAACTACAAATATAAAAAAAAATCTAGAAACAAATAATATGAC
GAAACAAAAACCTTCGAAATAATATCACAAAACAAAAAATTTTGAAACCG
CAATTGAACCTTTTTGTTGTTTTGGACATGTCTCCATGGTGCAAAACTTT
TATAAGTCGCACAATCACATGTTATTTAAAGAAAGAAGAAAATGAAGGAA
AAAAAAAAACCAAACAGTATGGGCCGGATGTCGTCTTTTAAATTTATTAC
ACAGTTTTAAATCTGTATGTCATCAAAACTAATTTGATTCATTAAAAAAA
TAAATTGAGGCAGAATAATCTACGTATATGATAAACACTCAGTGTTGAAA
TAggatgaaaattttttgtctccaactcctatctccaaaccttgtccctc
caatcataaattgccacgttattgtatttaatttttattttTGTTAAGTA
CATCTCAGCCATCTTCAAAGCCACGTACCCACCATAACTGAAGGCGTTCA
ATGAGGCGCTGCAGCTCCCCGCTCTCGTGGAGTTGCCGGACCTTGTCGGC
ATGAAGTCGCGCGGCAGTGCAACGCTGCAGCGGCCGAGGATCCCGAGGAG
CTCGTCGCGGAAGCGGTCGTCGATGGAGATGTCGCGCTCGTTGACGGTGA
CGCGGAGGCCGCGGAGGATGGATCGGACGGCGCGACAGTCGTCGAAGGTG
CAGGGAACGATGCAGAGGGAGGTGAAGTAGACGATGACGCCTTGGTCGAG
GCCAGGCGGCAATGTGGCGGGGGAGGCGGCGCGTGA
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Coding sequence (CDS) from alignment at CcLG04_v2.0:15398613..15400798+

>drCajCajn.Asha.2.0.Cc_v2.0_09902.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_09902.1; Name=Cc_v2.0_09902.1; organism=Cajanus cajan; type=CDS; length=762bp; location=Sequence derived from: CcLG04_v2.0:15398613..15400798+ (Cajanus cajan
ATGGACAGAACATCTTATCCAGACATACCAAACAAGAGCTTAAATGAAAT
CAAGAGTGTACTTGTCTCAACTCTTGCATCACATGGGCAATTGTCCGAGG
CTCTTCTTGTATATGAGGAGATTAAGAAAGCTGGATATAATTTGGAGCCA
AAAGCTGTTATAAGTCTTATTGAGGAGTTCACTCAATTCAATGGGGAATT
GGATGGGCTACTGCTTCTACTTAAGGAAGTGAGTGATCTAGACTATTGGG
TTGATGGTTGCTTCAAGGTTATCATGTATTGTATACGGATCAAGAATTTG
AGTTCTGCTATTCTCTTGTGCAAGCAACTCAAGGATAAGTTTGAAAATGA
TGAAATAGTAATGGAATCTCTTATGATGCGTTCTTGTGCGAATGCCGGAG
ATTTGAATAATGCTCGCTTGATTTGGAGAGAATACGAGATTGCTGGATTT
CCTTACAATGTAAAATGTTACTTGAGagctgatccgccggCTCCCCGCTC
TCGTGGAGTTGCCGGACCTTGTCGGCATGAAGTCGCGCGGCAGTGCAACG
CTGCAGCGGCCGAGGATCCCGAGGAGCTCGTCGCGGAAGCGGTCGTCGAT
GGAGATGTCGCGCTCGTTGACGGTGACGCGGAGGCCGCGGAGGATGGATC
GGACGGCGCGACAGTCGTCGAAGGTGCAGGGAACGATGCAGAGGGAGGTG
AAGTAGACGATGACGCCTTGGTCGAGGCCAGGCGGCAATGTGGCGGGGGA
GGCGGCGCGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding