Cc_v2.0_17607.1

Transcript Overview
NameCc_v2.0_17607.1
Unique NamedrCajCajn.Asha.2.0.Cc_v2.0_17607.1
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length627
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CcLG08_v2.0chromosomeCcLG08_v2.0:2555473..2559963 +Cajanus cajan cv. Asha genome v2.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
avjccaL027Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0108Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL301Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0769Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0989Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0990Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0995Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carccaL521Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccapsR700Pisum sativum Cameor genome v1aPisum sativum
ccavrvR624Vigna radiata cv. VC1973A genome v6.0Vigna radiata
carccaL665Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccavrvR660Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavfhR668Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR735Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavfhR706Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR768Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavssR706Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccccaL0096Cajanus cajan Asha genome v1.0Cajanus cajan
ccavssR765Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccccaL1229Cajanus cajan Asha genome v1.0Cajanus cajan
ccavumR708Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR577Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR728Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR582Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavunR499Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccavunR505Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR762Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR790Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-KK1_028938Cajanus cajan Asha genome v1.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cc_v2.0_17607drCajCajn.Asha.2.0.Cc_v2.0_17607Cajanus cajangene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_17607.1.exon1drCajCajn.Asha.2.0.Cc_v2.0_17607.1.exon1Cajanus cajanexon
Cc_v2.0_17607.1.exon2drCajCajn.Asha.2.0.Cc_v2.0_17607.1.exon2Cajanus cajanexon
Cc_v2.0_17607.1.exon3drCajCajn.Asha.2.0.Cc_v2.0_17607.1.exon3Cajanus cajanexon
Cc_v2.0_17607.1.exon4drCajCajn.Asha.2.0.Cc_v2.0_17607.1.exon4Cajanus cajanexon
Cc_v2.0_17607.1.exon5drCajCajn.Asha.2.0.Cc_v2.0_17607.1.exon5Cajanus cajanexon
Cc_v2.0_17607.1.exon6drCajCajn.Asha.2.0.Cc_v2.0_17607.1.exon6Cajanus cajanexon
Cc_v2.0_17607.1.exon7drCajCajn.Asha.2.0.Cc_v2.0_17607.1.exon7Cajanus cajanexon
Cc_v2.0_17607.1.exon8drCajCajn.Asha.2.0.Cc_v2.0_17607.1.exon8Cajanus cajanexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_17607.1.utr5p1drCajCajn.Asha.2.0.Cc_v2.0_17607.1.utr5p1Cajanus cajanfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.Cc_v2.0_17607.1drCajCajn.Asha.2.0.cds.Cc_v2.0_17607.1Cajanus cajanCDS
cds.Cc_v2.0_17607.1drCajCajn.Asha.2.0.cds.Cc_v2.0_17607.1_2Cajanus cajanCDS
cds.Cc_v2.0_17607.1drCajCajn.Asha.2.0.cds.Cc_v2.0_17607.1_3Cajanus cajanCDS
cds.Cc_v2.0_17607.1drCajCajn.Asha.2.0.cds.Cc_v2.0_17607.1_4Cajanus cajanCDS
cds.Cc_v2.0_17607.1drCajCajn.Asha.2.0.cds.Cc_v2.0_17607.1_5Cajanus cajanCDS
cds.Cc_v2.0_17607.1drCajCajn.Asha.2.0.cds.Cc_v2.0_17607.1_6Cajanus cajanCDS
cds.Cc_v2.0_17607.1drCajCajn.Asha.2.0.cds.Cc_v2.0_17607.1_7Cajanus cajanCDS
cds.Cc_v2.0_17607.1drCajCajn.Asha.2.0.cds.Cc_v2.0_17607.1_8Cajanus cajanCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_17607.1.utr3p1drCajCajn.Asha.2.0.Cc_v2.0_17607.1.utr3p1Cajanus cajanthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drCajCajn.Asha.2.0.Cc_v2.0_17607.1drCajCajn.Asha.2.0.Cc_v2.0_17607.1Cajanus cajanpolypeptide
drCajCajn.Asha.2.0.Cc_v2.0_17607.1drCajCajn.Asha.2.0.Cc_v2.0_17607.1-proteinCajanus cajanpolypeptide


Homology
[Close]
BLAST of Cc_v2.0_17607.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151S3J1|A0A151S3J1_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_028938 PE=3 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.552e-94
Identity = 135/138 (97.83%), Postives = 135/138 (97.83%), Query Frame = 0 
Query:    1 MAGRGRGRGGWGRGRGGGGGFTFAAQVPFDPFPEDVTLPEVKIGDIDASTKKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSLSQVLMFKEFPQELVQGASKQTSRRKKFRWNPESGNNKL 138
            MAGRGRGRGGWGRGRGGGGGFTFAAQVPFDPFPEDVTLPEVKIGDIDASTKKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSLSQVLMFKEFPQELVQGASKQTSRRKKFRWNPE   NKL
Sbjct:    1 MAGRGRGRGGWGRGRGGGGGFTFAAQVPFDPFPEDVTLPEVKIGDIDASTKKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSLSQVLMFKEFPQELVQGASKQTSRRKKFRWNPEC--NKL 136
[Close]
BLAST of Cc_v2.0_17607.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0R0GAU2|A0A0R0GAU2_SOYBN (DNA-directed RNA polymerase III subunit OS=Glycine max OX=3847 GN=GLYMA_15G171400 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.655e-72
Identity = 124/166 (74.70%), Postives = 143/166 (86.14%), Query Frame = 0 
Query:   22 TFAAQVPFDPFPEDVTLPEVKIGDIDASTKKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSLSQVLMFKEFPQELVQGASKQTSRRKKFRWNPESGNNKLDFLEQQEEKNKGKEDVDENEKKDGED-EEDENAEEEDDDDISEDDYHQN 186
            TFA+QVPFD FPE VTLP+V + DI   TKKLL W   LQNYW+ASPY LE++TSKKRQ MHIA+FSD+K NDFTRDSLSQVLMF +FPQELVQGASK+ SRRKKFRWNPES   KLDF EQQE+ N+GKE+ DENEKKDGED +EDENA+EED++DIS+DDY+QN
Sbjct:   19 TFASQVPFDLFPEAVTLPDVNLDDIHDDTKKLLRWDSHLQNYWEASPYFLEDKTSKKRQSMHIAKFSDRKKNDFTRDSLSQVLMFNDFPQELVQGASKRASRRKKFRWNPESEMKKLDFFEQQEKTNQGKEENDENEKKDGEDGDEDENAQEEDEEDISDDDYNQN 184
[Close]
BLAST of Cc_v2.0_17607.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1MEM9|I1MEM9_SOYBN (DNA-directed RNA polymerase III subunit OS=Glycine max OX=3847 GN=100804236 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.970e-72
Identity = 124/166 (74.70%), Postives = 143/166 (86.14%), Query Frame = 0 
Query:   22 TFAAQVPFDPFPEDVTLPEVKIGDIDASTKKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSLSQVLMFKEFPQELVQGASKQTSRRKKFRWNPESGNNKLDFLEQQEEKNKGKEDVDENEKKDGED-EEDENAEEEDDDDISEDDYHQN 186
            TFA+QVPFD FPE VTLP+V + DI   TKKLL W   LQNYW+ASPY LE++TSKKRQ MHIA+FSD+K NDFTRDSLSQVLMF +FPQELVQGASK+ SRRKKFRWNPES   KLDF EQQE+ N+GKE+ DENEKKDGED +EDENA+EED++DIS+DDY+QN
Sbjct:   21 TFASQVPFDLFPEAVTLPDVNLDDIHDDTKKLLRWDSHLQNYWEASPYFLEDKTSKKRQSMHIAKFSDRKKNDFTRDSLSQVLMFNDFPQELVQGASKRASRRKKFRWNPESEMKKLDFFEQQEKTNQGKEENDENEKKDGEDGDEDENAQEEDEEDISDDDYNQN 186
[Close]
BLAST of Cc_v2.0_17607.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445GQQ9|A0A445GQQ9_GLYSO (DNA-directed RNA polymerase III subunit RPC7 OS=Glycine soja OX=3848 GN=D0Y65_040267 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.898e-71
Identity = 124/166 (74.70%), Postives = 143/166 (86.14%), Query Frame = 0 
Query:   22 TFAAQVPFDPFPEDVTLPEVKIGDIDASTKKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSLSQVLMFKEFPQELVQGASKQTSRRKKFRWNPESGNNKLDFLEQQEEKNKGKEDVDENEKKDGED-EEDENAEEEDDDDISEDDYHQN 186
            TFA+QVPFD FPE VTLP+V + DI   TKKLL W   LQNYW+ASPY LE++TSKKRQ MHIA+FSD+K NDFTRDSLSQVLMF +FPQELVQGASK+ SRRKKFRWNPES   KLDF EQQE+ N+GKE+ DENEKKDGED +EDENA+EED++DIS+DDY+QN
Sbjct:   24 TFASQVPFDLFPEAVTLPDVNLDDIHDDTKKLLRWDSHLQNYWEASPYFLEDKTSKKRQSMHIAKFSDRKKNDFTRDSLSQVLMFNDFPQELVQGASKRASRRKKFRWNPESEMKKLDFFEQQEKTNQGKEENDENEKKDGEDGDEDENAQEEDEEDISDDDYNQN 189
[Close]
BLAST of Cc_v2.0_17607.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6KHT5|A0A4D6KHT5_VIGUN (DNA-directed RNA polymerase III subunit RPC7 OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g413 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.761e-71
Identity = 111/144 (77.08%), Postives = 121/144 (84.03%), Query Frame = 0 
Query:   22 TFAAQVPFDPFPEDVTLPEVKIGDIDASTKKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSLSQVLMFKEFPQELVQGASKQTSRRKKFRWNPESGNNKLDFLEQQEEKNKGKEDVDENEKKDGEDE 165
            TFA+QVPFD FPEDVTLPE KIGDID +TKKLL WS KLQNYWKASPY LEE TSKKRQ MH+ RFSDKK NDFTRDSLSQV+ F  FP ELVQG SK+ SRRKKFRWNPES   K+DF EQQE+ N+GKE+ DE EKK+GEDE
Sbjct:   21 TFASQVPFDLFPEDVTLPEFKIGDIDVNTKKLLNWSNKLQNYWKASPYLLEEATSKKRQTMHVDRFSDKKTNDFTRDSLSQVITFNGFPHELVQGKSKRMSRRKKFRWNPESEMKKMDFFEQQEKTNQGKEETDEAEKKEGEDE 164
[Close]
BLAST of Cc_v2.0_17607.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0R0FXD4|A0A0R0FXD4_SOYBN (DNA-directed RNA polymerase III subunit OS=Glycine max OX=3847 GN=100804236 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.432e-71
Identity = 124/166 (74.70%), Postives = 143/166 (86.14%), Query Frame = 0 
Query:   22 TFAAQVPFDPFPEDVTLPEVKIGDIDASTKKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSLSQVLMFKEFPQELVQGASKQTSRRKKFRWNPESGNNKLDFLEQQEEKNKGKEDVDENEKKDGED-EEDENAEEEDDDDISEDDYHQN 186
            TFA+QVPFD FPE VTLP+V + DI   TKKLL W   LQNYW+ASPY LE++TSKKRQ MHIA+FSD+K NDFTRDSLSQVLMF +FPQELVQGASK+ SRRKKFRWNPES   KLDF EQQE+ N+GKE+ DENEKKDGED +EDENA+EED++DIS+DDY+QN
Sbjct:   21 TFASQVPFDLFPEAVTLPDVNLDDIHDDTKKLLRWDSHLQNYWEASPYFLEDKTSKKRQSMHIAKFSDRKKNDFTRDSLSQVLMFNDFPQELVQGASKRASRRKKFRWNPESEMKKLDFFEQQEKTNQGKEENDENEKKDGEDGDEDENAQEEDEEDISDDDYNQN 186
[Close]
BLAST of Cc_v2.0_17607.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151S3I3|A0A151S3I3_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_028955 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 2.222e-67
Identity = 101/108 (93.52%), Postives = 103/108 (95.37%), Query Frame = 0 
Query:   27 VPFDPFPEDVTLPEVKIGDIDASTKKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSLSQVLMFKEFPQELVQGASKQTSRRKKFRWNPESG 134
            V  +   +DVTLPEVKIGDIDASTKKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSLSQVLMFKEFPQELVQGASKQTSRRKKFRWNPESG
Sbjct:   26 VTINLMLQDVTLPEVKIGDIDASTKKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSLSQVLMFKEFPQELVQGASKQTSRRKKFRWNPESG 133
[Close]
BLAST of Cc_v2.0_17607.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3S2Q1|A0A0S3S2Q1_PHAAN (DNA-directed RNA polymerase III subunit OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G045500 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.478e-65
Identity = 140/188 (74.47%), Postives = 160/188 (85.11%), Query Frame = 0 
Query:   22 TFAAQVPFDPFPEDVTLPEVKIGDIDASTKKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSLSQVLMFKEFPQELVQGASKQTSRRKKFRWNPESGNNKLDFLEQQEEKNKGKEDVDENEKKDGEDEE-DENAEEEDDDDISEDDYHQNEYFDDDEDDYNDVEDGNDEPIY 208
            TFA+QVPFD FPEDVTLPE KI DID +TKKLL WS KLQNYWKASPY LEE TSKKRQ MH+ RFSDKK N+FTRDSLSQVL F  FP ELVQG SK+ SRRKKFRWNPES   K+DF EQQE+ N+GKE+ DE EKK+GEDE+ D NAEEED++D+S+DDY+QN  FDDD+DD+NDV+DG+DEPIY
Sbjct:   21 TFASQVPFDLFPEDVTLPEFKIDDIDVNTKKLLSWSNKLQNYWKASPYLLEETTSKKRQSMHVDRFSDKKTNEFTRDSLSQVLTFNGFPHELVQGKSKRMSRRKKFRWNPESEMKKMDFFEQQEKTNQGKEETDETEKKEGEDEDGDGNAEEEDEEDMSDDDYNQNIDFDDDDDDFNDVDDGDDEPIY 208
[Close]
BLAST of Cc_v2.0_17607.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9VFQ3|A0A0L9VFQ3_PHAAN (DNA-directed RNA polymerase III subunit OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0065920 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.478e-65
Identity = 140/188 (74.47%), Postives = 160/188 (85.11%), Query Frame = 0 
Query:   22 TFAAQVPFDPFPEDVTLPEVKIGDIDASTKKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSLSQVLMFKEFPQELVQGASKQTSRRKKFRWNPESGNNKLDFLEQQEEKNKGKEDVDENEKKDGEDEE-DENAEEEDDDDISEDDYHQNEYFDDDEDDYNDVEDGNDEPIY 208
            TFA+QVPFD FPEDVTLPE KI DID +TKKLL WS KLQNYWKASPY LEE TSKKRQ MH+ RFSDKK N+FTRDSLSQVL F  FP ELVQG SK+ SRRKKFRWNPES   K+DF EQQE+ N+GKE+ DE EKK+GEDE+ D NAEEED++D+S+DDY+QN  FDDD+DD+NDV+DG+DEPIY
Sbjct:   21 TFASQVPFDLFPEDVTLPEFKIDDIDVNTKKLLSWSNKLQNYWKASPYLLEETTSKKRQSMHVDRFSDKKTNEFTRDSLSQVLTFNGFPHELVQGKSKRMSRRKKFRWNPESEMKKMDFFEQQEKTNQGKEETDETEKKEGEDEDGDGNAEEEDEEDMSDDDYNQNIDFDDDDDDFNDVDDGDDEPIY 208
[Close]
BLAST of Cc_v2.0_17607.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7BSU9|V7BSU9_PHAVU (DNA-directed RNA polymerase III subunit OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G182200g PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 7.672e-64
Identity = 142/188 (75.53%), Postives = 163/188 (86.70%), Query Frame = 0 
Query:   22 TFAAQVPFDPFPEDVTLPEVKIGDIDASTKKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSLSQVLMFKEFPQELVQGASKQTSRRKKFRWNPESGNNKLDFLEQQEEKNKGKEDVDENEKKDGEDEE-DENAEEEDDDDISEDDYHQNEYFDDDEDDYNDVEDGNDEPIY 208
            TFA+QVPFD FPEDVTLPE KIG+IDA+TKKLL WS KLQNYWKASPY LEE TSKKRQ MHI RFSDKK NDFTRDSLSQVL F +FP ELVQG +K+ S+RKKFRWNPES   K+DF EQQE+ N+GKE+ +E EKK+GEDE+ D NAEEEDD+D+S+DDY+QN  FDDD+DDYNDV+DG+DEPIY
Sbjct:   22 TFASQVPFDLFPEDVTLPEFKIGEIDANTKKLLNWSNKLQNYWKASPYLLEETTSKKRQTMHIDRFSDKKKNDFTRDSLSQVLTFNDFPPELVQGKTKRASKRKKFRWNPESEMKKMDFFEQQEKTNQGKEETEETEKKEGEDEDGDGNAEEEDDEDMSDDDYNQNIDFDDDDDDYNDVDDGDDEPIY 209
The following BLAST results are available for this feature:
BLAST of Cc_v2.0_17607.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A151S3J1|A0A151S3J1_CAJCA1.552e-9497.83Uncharacterized protein OS=Cajanus cajan OX=3821 G... [more]
tr|A0A0R0GAU2|A0A0R0GAU2_SOYBN4.655e-7274.70DNA-directed RNA polymerase III subunit OS=Glycine... [more]
tr|I1MEM9|I1MEM9_SOYBN4.970e-7274.70DNA-directed RNA polymerase III subunit OS=Glycine... [more]
tr|A0A445GQQ9|A0A445GQQ9_GLYSO1.898e-7174.70DNA-directed RNA polymerase III subunit RPC7 OS=Gl... [more]
tr|A0A4D6KHT5|A0A4D6KHT5_VIGUN2.761e-7177.08DNA-directed RNA polymerase III subunit RPC7 OS=Vi... [more]
tr|A0A0R0FXD4|A0A0R0FXD4_SOYBN3.432e-7174.70DNA-directed RNA polymerase III subunit OS=Glycine... [more]
tr|A0A151S3I3|A0A151S3I3_CAJCA2.222e-6793.52Uncharacterized protein OS=Cajanus cajan OX=3821 G... [more]
tr|A0A0S3S2Q1|A0A0S3S2Q1_PHAAN1.478e-6574.47DNA-directed RNA polymerase III subunit OS=Vigna a... [more]
tr|A0A0L9VFQ3|A0A0L9VFQ3_PHAAN1.478e-6574.47DNA-directed RNA polymerase III subunit OS=Phaseol... [more]
tr|V7BSU9|V7BSU9_PHAVU7.672e-6475.53DNA-directed RNA polymerase III subunit OS=Phaseol... [more]
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BLAST of Cc_v2.0_17607.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot )
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cc_v2.0_17607.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024661DNA-directed RNA polymerase III, subunit Rpc31PFAMPF11705RNA_pol_3_Rpc31coord: 45..194
e-value: 7.4E-4
score: 31.1
IPR024661DNA-directed RNA polymerase III, subunit Rpc31PANTHERPTHR15367DNA-DIRECTED RNA POLYMERASE IIIcoord: 1..205

Sequences
The following sequences are available for this feature:

mRNA sequence

>drCajCajn.Asha.2.0.Cc_v2.0_17607.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_17607.1; Name=Cc_v2.0_17607.1; organism=Cajanus cajan; type=mRNA; length=627bp
ATGGCAGGCAgaggtcggggacgaggaggatggggacgaggacgaggGGG
TGGGGGTGGGTTTACATTTGCAGCTCAAGTTCCATTTGATCCTTTTCCTG
AGGATGTTACTTTACCTGAAGTTAAAATTGGTGATATTGATGCTAGTACG
AAAAAGCTGCTTATTTGGAGTTATAAGCTTCAGAATTATTGGAAAGCCTC
CCCTTATCATCTGGAGGAGAGAACCTCGAAGAAGAGGCAAAGGATGCACA
TAGCTAGATTTTCTGACAAGAAGGGAAATGATTTTACTCGTGACTCTCTG
TCACAAGTTTTGATGTTCAAGGAATTTCCTCAGGAGTTGGTTCAAGGTGC
ATCTAAGCAGACGTCAAGAAGAAAAAAGTTTCGATGGAACCCGGAGTCAG
GGAATAATAAACTTGATTTCCTTGAACAACAAGAGGAAAAAAACAAGGGC
AAGgaggatgtcgatgaaaatgaaaagaaagatggagaagatgaagaaga
tgaaaatgcagaagaggaggacgatgatgatATCAGCGAGGATGATTATC
ATCAGAATGAATATTTtgatgacgatgaagatgattataatgatgTAGAG
GACGGGAATGATGAACCTATCTATTAG
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protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_17607.1

>drCajCajn.Asha.2.0.Cc_v2.0_17607.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_17607.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_17607.1; organism=Cajanus cajan; type=polypeptide; length=208bp
MAGRGRGRGGWGRGRGGGGGFTFAAQVPFDPFPEDVTLPEVKIGDIDAST
KKLLIWSYKLQNYWKASPYHLEERTSKKRQRMHIARFSDKKGNDFTRDSL
SQVLMFKEFPQELVQGASKQTSRRKKFRWNPESGNNKLDFLEQQEEKNKG
KEDVDENEKKDGEDEEDENAEEEDDDDISEDDYHQNEYFDDDEDDYNDVE
DGNDEPIY
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mRNA from alignment at CcLG08_v2.0:2555473..2559963+

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drCajCajn.Asha.2.0.Cc_v2.0_17607.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_17607.1; Name=Cc_v2.0_17607.1; organism=Cajanus cajan; type=mRNA; length=4491bp; location=Sequence derived from: CcLG08_v2.0:2555473..2559963+ (Cajanus cajan
CGCTTTTACAAAATTGAACTCTTAAATATAATCATATAAATTTCACCTGA
ACCCGTAGAGGTTAGGCTAACTGACTTACACAGCCCTAGCCCATTAACAG
AACGGAGAAACCTCAAGCCGCCGCACCCTTTCCCTCTCTTCTCTCCACCA
GCCACCTCCGACAGCGAACGCCACTAACAACGAGGTGTTTTGCAAGTCCT
TCCCTTGCGGACTTGGAATTTGAGTGAAGATGGCAGGCAgaggtcgggga
cgaggaggatggggacgaggacgaggGGGTGGGGGTGGGTTTACATTTGC
AGCTCAAGTTCCATTTGATCCTTTTCCTGAGGTATTTCATTTTTCACTTC
TATATCCATACCCTACTAACTTTCCTTCATCTTCCATTCTCTGTTGTTGA
TCGTTCCCCAATCAGAAAGAGTTGGTCACAATCTAATACTGCTCCTATTT
TTTATTTTATTTTATGCTGATTGTTCAAATGTTTGCCCCTCTACTTTAAA
TGATTTATAGCTTCTCAGTTCTTGTTTATTAAAACCTCAATTATTTCTTT
ACATCAGAAGCTGACAAATGAAGAGGGTGGGCGGTCTGTTTCTCTGTTTT
TTTTTTTTATTATATATAATCAATTGCTCATGCTTATTACTTGTTACTAT
CAATCTGATGCTACAGGATGTTACTTTACCTGAAGTTAAAATTGGTGATA
TTGATGCTAGTACGAAAAAGCTGCTTATTTGGAGTTATAAGCTTCAGAAT
TATTGGAAAGCCTCCCCTTATCATCTGGAGGAGAGAACCTCGAAGAGTAA
GCATTTAGTTGTTTCTACATGTATATTGTGTGAGAAGGCCACATCAAAAT
GATTTACTTTAGTGCATTATTATATTATTGTTTCATGTACGATCTTTTAC
TTAATTATGCTTCCCACATTAGCTGGGAATGAAATGCTCCTGAAATGAGT
AGGTTTACACCATAAAAATCCAGGCATACTGTTTCTAAAACATTTTCATT
GCTATCATGGAACCATATTTGTCCTAAATATCTGCCTCCTCTCTTCCCCA
ACATGCATACTATTATTTATTTTTTTTCTGGTAAACTTCGTTGGAGTACA
TTAATCTTCTTGTTTTCTCATCAGAGAGGCAAAGGATGCACATAGCTAGA
TTTTCTGACAAGAAGGGAAATGATTTTACTCGTGACTCTCTGTCACAAGT
TTTGATGTTCAAGGAATTTCCTCAGGAGTTGGTTCAAGGTGTGAATAAGG
GAATAATGGGGTGTTGAGGCAGTGGTTACTGTTAACAAATGATGTAAACT
TAAATTTGTGTTTTCAGGTGCATCTAAGCAGACGTCAAGAAGAAAAAAGT
TTCGATGGAACCCGGAGTCAGGTTTAATGATTTTTCATTTGACCTTTTTC
CTTTCATGGGGTATTAGCTATTGGTTATCTGCTAATGTGAATGTGTTTTA
GATCAGCACAAAAAAAGTTTAATCATCCTAAATAGCTCCCATTATCTTGA
AGGAACTTTATGAAATTCTCATTACTTAAAATTTTATAAATGGTGTTCTA
TCGAGAAGTTTATGTACATACATATAGATGCAACATTCTATTCTAGATTG
TAATATTGTTGTATAAATGTTTGATAGCTTCTGCTGCTGAAACTAGTTTT
TATTGGGATATTATCTATGTCTGTCTACAAAGTTGATCATTGTTTACCTA
TAGTAATGATATTAAGCCTTATATTTGTCTTTAGACTGATTAAGATGTTT
GTGTGACAGGGAATAATAAACTTGATTTCCTTGAACAACAAGAGGAAAAA
AACAAGGTAGAGCGCCTGTTTAGAGCTCTATGCATGTGTGTGTGATAACA
AGGCACTAACTCTTCCATTTGTTTCATTATGGAACATGTTTAATTTGATG
TAACTTACTAAGTTCAATATTTATTGTTACTGGATGGGAACAAGGTTTTA
AATTGTGGCAGATGTACTAGTTGCGTGGCAGATGTACTAGTTGCATTGCA
GATAGATCTCTGCAATCGCAGCCAGATGCAGTTGTGACCGGCCACAACCT
AGATAGATATTGTTGCCCTTGATTCCAAACTCCAGTGGACTTTCTATACA
CTTTAAGGTTCTTTGTCGCTAATGGAATGGATTTTGGAACCTACATTTTT
TAATTTCTGCCTTCGTATATCTCCTAGAATTGGAATTTTAATTCCTAATA
GCTTTTTTAAGGAATCGACCTATAATTAACCGAAGAAAATCTCAATTCTT
AATCTAGATCCTATGATTTCTAAGTGAAAGAAGGCAAAATAAGAGGAAGG
CTCTAACTTACTGATAAGGTGTAATAAGTTACTACAATCTCAGTTTGATA
CTTCAACAACCTCCTCTGCTTCTTTCACCTCCCCCACTACTATTGCCACC
ATCATTGCATTATTGCAAAGACTACCATCGCCTTTGCCACTCTATACAAA
CACCATTATTGATGTTACCACTAGTGCTAATCACATTAACACTGCCCCCA
CCACTGAGCCATCAATTTTattatcattacatccatgattattatcactg
ccatcatcattaccactaccattacattagcaAACTTAAAGGAATGTTGA
GCGCTAGATCATTAGTTATGGGAGTAAGATTGCATTTGTTCCAAATGAAT
ATTGTATTTCTTTTTTGATTCTATTGTTGGGCCACCTTTACTTTTCCAGT
GAAATTCTGTGTTGTTGATTCTTTCACCTGTAGGGCAAGgaggatgtcga
tgaaaatgaaaagaaagatggagaagatgaagaagatgaaaatgcagaag
aggaggacgatgatgatATCAGCGAGGATGATTATCATCAGGTTCCACTG
TAACTTCTTTGATGCGATAATTTTTCCATTCTAAAACTCAAGATGGTTCT
CTCTTGTCTCTGTGATGCAATAATAATACATTTAGTCACAAAACCGTACC
CAACAAATTTTTCAAATGGAAGTTAAAGTAGAAGTTTAAAGCTAAACTTG
CCTAACATTTGACTATGAAAAACTTGAATTTATATGGTTTACTATGTCAT
TAAAATCCTTTTGTGAACTGTGTCAAGGGTTGAGCATGACCTTTAAAATT
TGAAAATAGATATGCTGAAAACACCTAATAAGTTGATAATGGGAGCAAGT
TTCTTAGCTGTAGCAGTTTATTATTTCCCCCCCTTCGTAGGAGAAATTAA
GTGTCTCTCTTTACATAAATAAACTTGCCATATTGTGCAATATCCTGCAG
CTCCAACTAATGACTCCCAAACAaaaatattaaattaaaaaagagaaaat
agaaagttggaggaaaaaaatagaaaatagaaaCATCATGAATTTGGTCT
ATCTTTTGCTTGCTCAATGCTTCGCGAGGTTTCTTTTAAATTTTAAGTGG
ATTCCATATAAAACTTGGCGTTTTTTAAAATGTTACTCAATATGCTCTCC
ACAAGTTGACAAGTAAACAATACAAAATGATAAGACTTGGGAAGAAAAAG
ACAAGTAGATGATGAGAATTGTGATGGATTTGTCCGCCTTGATCTTGCTC
TTTGATTTTTGAGGTTTCTTTTAAATTGTAGAAGTGAATGTATATTAAAC
TTGGCATTTGTTCAAATGTTTCATACATGCATTGCACATTCTTCCGTTGA
CAACAGGTGTTAGTATAAACTTATTTTAGCATTCGATGAAATTGTTACTA
AAATTGGATTTTGGAAGTCACTTAATTTGACATGGTGAGGGCTCAAGGGA
ATGGCTCATTACTTTGTGGAACTTTTTAGCAGTTAGAATCTGATATTAGT
AGTTTGAAGAGTTATTTCACTTGTTTCCCTCTTTCTTGCTATGGTTGTAT
CACttgtatgttttgtttttatgttaatgaagcatatggtcgttaagctt
tgtgtttttcgttttatgttAAAAGAAAAAGTAAAAAAAAAATGTAAGTT
ACTTTGTTTATAGGAATTCTAGTGATAGCTGAGTGCCCAAGTCAGTGTAA
AAAAAAATTGATTGATTGTCTAACTCTAATAAAATCTTGCAGAATGAATA
TTTtgatgacgatgaagatgattataatgatgTAGAGGACGGGAATGGTA
CTGTCACTTTACTTTTCTAATACTTTTTTCGTTGACTTACGTTTTGATAA
TCTTAACCAAATTTACCTGAGATGTTTTAATGTAATCAACtttttttttt
tttttttttttttGCAGATGAACCTATCTATTAGATATCTTTGGGGGAGA
ATGATCTTCTGCTCATCCCGCAATAGCTATACAAGCATAGACTATTGCAT
CTTTAATATGTTACAAGTTGGGAATTCAAATTACGTGTTAGCCTTATTTA
GCTTTTACTTTGTAAATATTTTAAATTGTTCAATTACAAACCGGTATCTT
TTTTGTAAATGTTTAGTTTAAATTTGTGTACCCCTTTACCAGAAAGAAAT
TTTGTTTATAGAAAACTTGAAAGAAATATATTTAGAGGTGC
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Coding sequence (CDS) from alignment at CcLG08_v2.0:2555473..2559963+

>drCajCajn.Asha.2.0.Cc_v2.0_17607.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_17607.1; Name=Cc_v2.0_17607.1; organism=Cajanus cajan; type=CDS; length=627bp; location=Sequence derived from: CcLG08_v2.0:2555473..2559963+ (Cajanus cajan
ATGGCAGGCAgaggtcggggacgaggaggatggggacgaggacgaggGGG
TGGGGGTGGGTTTACATTTGCAGCTCAAGTTCCATTTGATCCTTTTCCTG
AGGATGTTACTTTACCTGAAGTTAAAATTGGTGATATTGATGCTAGTACG
AAAAAGCTGCTTATTTGGAGTTATAAGCTTCAGAATTATTGGAAAGCCTC
CCCTTATCATCTGGAGGAGAGAACCTCGAAGAAGAGGCAAAGGATGCACA
TAGCTAGATTTTCTGACAAGAAGGGAAATGATTTTACTCGTGACTCTCTG
TCACAAGTTTTGATGTTCAAGGAATTTCCTCAGGAGTTGGTTCAAGGTGC
ATCTAAGCAGACGTCAAGAAGAAAAAAGTTTCGATGGAACCCGGAGTCAG
GGAATAATAAACTTGATTTCCTTGAACAACAAGAGGAAAAAAACAAGGGC
AAGgaggatgtcgatgaaaatgaaaagaaagatggagaagatgaagaaga
tgaaaatgcagaagaggaggacgatgatgatATCAGCGAGGATGATTATC
ATCAGAATGAATATTTtgatgacgatgaagatgattataatgatgTAGAG
GACGGGAATGATGAACCTATCTATTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR024661RNA_pol_III_Rpc31
Vocabulary: Biological Process
TermDefinition
GO:0006383transcription by RNA polymerase III