Cc_v2.0_19537.1

Transcript Overview
NameCc_v2.0_19537.1
Unique NamedrCajCajn.Asha.2.0.Cc_v2.0_19537.1
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length1179
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CcLG08_v2.0chromosomeCcLG08_v2.0:54223833..54225605 +Cajanus cajan cv. Asha genome v2.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anccaL0049Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0050Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL137Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0222Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL291Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0413Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0575Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0849Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carccaL051Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccapsR677Pisum sativum Cameor genome v1aPisum sativum
ccapsR686Pisum sativum Cameor genome v1aPisum sativum
ccapsR713Pisum sativum Cameor genome v1aPisum sativum
carccaL616Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccavrvR613Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavrvR656Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavfhR659Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccavfhR685Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR748Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavfhR697Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR782Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavssR722Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavssR778Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccccaL0653Cajanus cajan Asha genome v1.0Cajanus cajan
ccccaL0659Cajanus cajan Asha genome v1.0Cajanus cajan
ccccaL0854Cajanus cajan Asha genome v1.0Cajanus cajan
ccavumR698Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR568Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavuR594Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR753Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavunR489Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccavunR516Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR777Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR801Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR807Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Va09G055770.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-TanjilR_09331Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat1g181920.1Pisum sativum Cameor genome v1aPisum sativum
Phvul.006G150800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun06g163100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun06g163100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-XM_014662109.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg38977.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.Ca_v2.0_00611Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
Vum_05G00670.1Vigna umbellata FF25 genome v1.0Vigna umbellata
PvulFLAVERTChr06.1864Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-TanjilR_06820Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.1g454040.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-KK1_005462Cajanus cajan Asha genome v1.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cc_v2.0_19537drCajCajn.Asha.2.0.Cc_v2.0_19537Cajanus cajangene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_19537.1.exon1drCajCajn.Asha.2.0.Cc_v2.0_19537.1.exon1Cajanus cajanexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_19537.1.utr5p1drCajCajn.Asha.2.0.Cc_v2.0_19537.1.utr5p1Cajanus cajanfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.Cc_v2.0_19537.1drCajCajn.Asha.2.0.cds.Cc_v2.0_19537.1Cajanus cajanCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_19537.1.utr3p1drCajCajn.Asha.2.0.Cc_v2.0_19537.1.utr3p1Cajanus cajanthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drCajCajn.Asha.2.0.Cc_v2.0_19537.1drCajCajn.Asha.2.0.Cc_v2.0_19537.1Cajanus cajanpolypeptide
drCajCajn.Asha.2.0.Cc_v2.0_19537.1drCajCajn.Asha.2.0.Cc_v2.0_19537.1-proteinCajanus cajanpolypeptide


Homology
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445GRZ8|A0A445GRZ8_GLYSO (Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja OX=3848 GN=D0Y65_040536 PE=3 SV=1)

HSP 1 Score: 680.248 bits (1754), Expect = 0.000e+0
Identity = 320/392 (81.63%), Postives = 361/392 (92.09%), Query Frame = 0 
Query:    1 MSVLSRLRHYSSSTASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ 392
            MS+ SRLRHYS++   SILSPNSS+PLTSKQKTRSA+HLLKSE+NPERILDICRAA+L+PD H+DRRAFSLA+SKL+AA+H AGIR FLDDLKTRPDLRNE+FLSHAIVLYGQANMLDHAIRTFT+DL  PRSVKTLNSLLFA++LAKNYKE++RIYLEFPK YSIQPN+DTYNTVIKA AESGS+ SVYSV AEMD+N++ PNV TLNN++SGFYRE+KF+DVGKV+KLM EKY V P +STYNVR+ SLC+LKRSSEAKAL+EGM+CNGRKPN VSY CLIHGFC+EGDLEEAKRLFRDMK RG++PDG CYFTLVHFLC GGEFE+ALEVAKECMGK W PNF+TMKSLVNGLAG  KVDEAKE+IKQIKE+F E+GDKWDEIEAGL Q
Sbjct:    1 MSIFSRLRHYSTT---SILSPNSSTPLTSKQKTRSAIHLLKSETNPERILDICRAAALTPDSHIDRRAFSLAVSKLAAAHHFAGIRTFLDDLKTRPDLRNEKFLSHAIVLYGQANMLDHAIRTFTEDLPSPRSVKTLNSLLFAALLAKNYKELTRIYLEFPKTYSIQPNLDTYNTVIKAFAESGSTSSVYSVLAEMDKNNIAPNVTTLNNSLSGFYREKKFDDVGKVLKLM-EKYSVFPSISTYNVRIQSLCKLKRSSEAKALLEGMVCNGRKPNSVSYACLIHGFCKEGDLEEAKRLFRDMKRRGYLPDGECYFTLVHFLCCGGEFEAALEVAKECMGKGWVPNFTTMKSLVNGLAGALKVDEAKEVIKQIKEKFAESGDKWDEIEAGLPQ 388
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1MFG1|I1MFG1_SOYBN (Pentacotripeptide-repeat region of PRORP domain-containing protein OS=Glycine max OX=3847 GN=100793100 PE=3 SV=1)

HSP 1 Score: 680.248 bits (1754), Expect = 0.000e+0
Identity = 320/392 (81.63%), Postives = 361/392 (92.09%), Query Frame = 0 
Query:    1 MSVLSRLRHYSSSTASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ 392
            MS+ SRLRHYS++   SILSPNSS+PLTSKQKTRSA+HLLKSE+NPERILDICRAA+L+PD H+DRRAFSLA+SKL+AA+H AGIR FLDDLKTRPDLRNE+FLSHAIVLYGQANMLDHAIRTFT+DL  PRSVKTLNSLLFA++LAKNYKE++RIYLEFPK YSIQPN+DTYNTVIKA AESGS+ SVYSV AEMD+N++ PNV TLNN++SGFYRE+KF+DVGKV+KLM EKY V P +STYNVR+ SLC+LKRSSEAKAL+EGM+CNGRKPN VSY CLIHGFC+EGDLEEAKRLFRDMK RG++PDG CYFTLVHFLC GGEFE+ALEVAKECMGK W PNF+TMKSLVNGLAG  KVDEAKE+IKQIKE+F E+GDKWDEIEAGL Q
Sbjct:    1 MSIFSRLRHYSTT---SILSPNSSTPLTSKQKTRSAIHLLKSETNPERILDICRAAALTPDSHIDRRAFSLAVSKLAAAHHFAGIRTFLDDLKTRPDLRNEKFLSHAIVLYGQANMLDHAIRTFTEDLPSPRSVKTLNSLLFAALLAKNYKELTRIYLEFPKTYSIQPNLDTYNTVIKAFAESGSTSSVYSVLAEMDKNNIAPNVTTLNNSLSGFYREKKFDDVGKVLKLM-EKYSVFPSISTYNVRIQSLCKLKRSSEAKALLEGMVCNGRKPNSVSYACLIHGFCKEGDLEEAKRLFRDMKRRGYLPDGECYFTLVHFLCCGGEFEAALEVAKECMGKGWVPNFTTMKSLVNGLAGALKVDEAKEVIKQIKEKFAESGDKWDEIEAGLPQ 388
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6KIM4|A0A4D6KIM4_VIGUN (Nucleobase:cation symporter-1 OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g744 PE=3 SV=1)

HSP 1 Score: 670.618 bits (1729), Expect = 0.000e+0
Identity = 327/392 (83.42%), Postives = 358/392 (91.33%), Query Frame = 0 
Query:    1 MSVLSRLRHYSSSTASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ 392
            MSVLSRLRH+S+S  SS    NSS+PLTSKQKTRSAL LLKSE+NPERIL+ICRAASL+PD HLDRRAFSLA+SKL+AANH  GIR FLDDLK+RPDLRNE+FLSHAIVLYGQA MLDHA+RTFTDDL+ PRSVK+LNSLLFAS+LAKNYKEVSRIYL+FPK YSIQP+VDTYNTVIKA AESGSS SVYSV AEMDRNSV+PNVITLNNA+ GFYREEKFE+VGKV+KLMEEKYRV P LST+NVR+ SLC+LKRSSEAKAL+EGM+CNGRKPN V+Y CLIHGFCREGDLEEAKRLFRDMK RG+ PDG CYFTLVHFLC  GEFE+ALEVAKECMGK W PNF+TMK LVNGLAG SKVDEAKELIKQIKE+F EN DKWDEIE+GLSQ
Sbjct:    1 MSVLSRLRHFSTSILSS----NSSTPLTSKQKTRSALRLLKSETNPERILEICRAASLTPDSHLDRRAFSLAVSKLAAANHFDGIRLFLDDLKSRPDLRNEKFLSHAIVLYGQAKMLDHALRTFTDDLSAPRSVKSLNSLLFASLLAKNYKEVSRIYLDFPKTYSIQPDVDTYNTVIKAFAESGSSTSVYSVLAEMDRNSVKPNVITLNNALFGFYREEKFEEVGKVLKLMEEKYRVFPALSTHNVRIQSLCKLKRSSEAKALLEGMVCNGRKPNSVTYACLIHGFCREGDLEEAKRLFRDMKRRGYSPDGECYFTLVHFLCRAGEFEAALEVAKECMGKGWVPNFTTMKVLVNGLAGASKVDEAKELIKQIKEKFAENEDKWDEIESGLSQ 388
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86TDH8|A0AA86TDH8_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS19255 PE=4 SV=1)

HSP 1 Score: 670.618 bits (1729), Expect = 0.000e+0
Identity = 318/392 (81.12%), Postives = 353/392 (90.05%), Query Frame = 0 
Query:    1 MSVLSRLRHYSSSTASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ 392
            MSVLSR+RH+S+S    ILSPNSS PL+SKQKTRSALHL K+E+NPERILDICRAASLSPD HLDRRAFSLAISKL+AANH  GIR FLDDLK+RPDLR+E+FL HAIVLYGQA ML+HA+RTFTDDL+PPRSVK+LNSLLFAS+LAKNYKEVSRIYL+FPK YSIQPNVDTYNTVIKA AESGSS S+YSV AEMDRNSV+PNV TLNN++SGFYREEKFE+VGKV+KLMEEKY V P LSTYNVR+ SLC+LKRSSEAK+L++GM+ NGRK N VSY CLIHGFCREGDLEEAKRL RDMK +G+ PDG CYFTLVHFLC  G+ E+ALEVAKECMGK W PNF+TMK LVNGLAG SKVDEAKE+IKQIKE+F ENGDKWDEIEA L Q
Sbjct:    1 MSVLSRIRHFSTS----ILSPNSSFPLSSKQKTRSALHLFKTETNPERILDICRAASLSPDSHLDRRAFSLAISKLAAANHFDGIRLFLDDLKSRPDLRDEKFLCHAIVLYGQAKMLNHALRTFTDDLSPPRSVKSLNSLLFASLLAKNYKEVSRIYLDFPKTYSIQPNVDTYNTVIKAFAESGSSTSIYSVLAEMDRNSVKPNVTTLNNSLSGFYREEKFEEVGKVLKLMEEKYSVFPALSTYNVRIQSLCKLKRSSEAKSLLDGMISNGRKLNSVSYACLIHGFCREGDLEEAKRLLRDMKRKGYFPDGECYFTLVHFLCRAGDLEAALEVAKECMGKGWVPNFTTMKGLVNGLAGASKVDEAKEIIKQIKEKFAENGDKWDEIEAALPQ 388
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7BRT8|V7BRT8_PHAVU (Pentacotripeptide-repeat region of PRORP domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G150800g PE=3 SV=1)

HSP 1 Score: 670.233 bits (1728), Expect = 0.000e+0
Identity = 329/392 (83.93%), Postives = 359/392 (91.58%), Query Frame = 0 
Query:    1 MSVLSRLRHYSSSTASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ 392
            MSVLSRLRH+S+S    ILSPNSSSPL+SKQKTRSALHLLKSE+NPERILDICRAASLSPD HLDRRAFSLA+SKL+AANH AGI  FLDDLK+RPDLRNE+FL HAIVLYGQANMLDHA+RTFTDDL+ PRSVK+LNSLLFAS+LAKNYKEVSRIYL+FPK YSIQPNVDT+N VIK  AESGSS SVYSVFAEMDRNS++PNV TLNN+ISGFYREEKFE+VGKV+KLMEEKYRV P LSTYNVR+ SLC+LKRSSE KAL+EGM+CNGRKPN VSY CLIHGFCREGDLEEAKRLFRDMK RG+ PDG CYFTLVHFLC  GEFE+ALEVAKE MGK W PNF+TMK LVNGLAG SKVDEAKE+IKQIKE+F ENGDKWDE+E+GLSQ
Sbjct:    1 MSVLSRLRHFSTS----ILSPNSSSPLSSKQKTRSALHLLKSETNPERILDICRAASLSPDSHLDRRAFSLAVSKLAAANHFAGISLFLDDLKSRPDLRNEKFLCHAIVLYGQANMLDHALRTFTDDLSSPRSVKSLNSLLFASLLAKNYKEVSRIYLDFPKTYSIQPNVDTFNIVIKTFAESGSSTSVYSVFAEMDRNSIKPNVTTLNNSISGFYREEKFEEVGKVLKLMEEKYRVFPALSTYNVRIQSLCKLKRSSEGKALLEGMVCNGRKPNSVSYACLIHGFCREGDLEEAKRLFRDMKRRGYSPDGECYFTLVHFLCRAGEFEAALEVAKESMGKGWVPNFTTMKVLVNGLAGASKVDEAKEVIKQIKEKFAENGDKWDEVESGLSQ 388
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3S3P7|A0A0S3S3P7_PHAAN (Pentacotripeptide-repeat region of PRORP domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G081300 PE=3 SV=1)

HSP 1 Score: 668.692 bits (1724), Expect = 0.000e+0
Identity = 325/392 (82.91%), Postives = 360/392 (91.84%), Query Frame = 0 
Query:    1 MSVLSRLRHYSSSTASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ 392
            MSVLSRLRH+S+S  SS    NSS+PLTSKQKTRSAL LLKSE+NPERILDICRAASL+P+ HLDRRAFSLAISKL+AANH  GIR FLDDLK+RPDLRNE+FLSHAIVLYGQANMLDHAIRTFTDD++P RSVK+LNSLLFAS+LAKNYKEVSRIYL+FPK YSIQP++DTYNTVIKA AESGSS S+YSV AEMDRNS++PNVITLNNA+ GFYREEKFE+VGKV+KLMEEKYRV P LSTYNVR+ SLC+LKRSSEAKAL+EGM+CN RKPN V+Y CLIHGFCREGDLEEAKRLFRDMKMRG+ PDG CYFTLVHFLC  GE E+ALEVAKECMGK W PNF+TMK+LVNGLAG SKV+EAKE+IKQIKE+F ENGDKWDEIE+GLSQ
Sbjct:    1 MSVLSRLRHFSTSILSS----NSSTPLTSKQKTRSALRLLKSETNPERILDICRAASLTPESHLDRRAFSLAISKLAAANHFDGIRLFLDDLKSRPDLRNEKFLSHAIVLYGQANMLDHAIRTFTDDISP-RSVKSLNSLLFASLLAKNYKEVSRIYLDFPKTYSIQPDIDTYNTVIKAFAESGSSTSIYSVLAEMDRNSIKPNVITLNNALFGFYREEKFEEVGKVLKLMEEKYRVFPALSTYNVRIQSLCKLKRSSEAKALLEGMVCNRRKPNSVTYACLIHGFCREGDLEEAKRLFRDMKMRGYSPDGECYFTLVHFLCRAGELEAALEVAKECMGKGWVPNFTTMKNLVNGLAGASKVNEAKEVIKQIKEKFAENGDKWDEIESGLSQ 387
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9VEF3|A0A0L9VEF3_PHAAN (Pentatricopeptide repeat-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0068960 PE=3 SV=1)

HSP 1 Score: 668.692 bits (1724), Expect = 0.000e+0
Identity = 325/392 (82.91%), Postives = 360/392 (91.84%), Query Frame = 0 
Query:    1 MSVLSRLRHYSSSTASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ 392
            MSVLSRLRH+S+S  SS    NSS+PLTSKQKTRSAL LLKSE+NPERILDICRAASL+P+ HLDRRAFSLAISKL+AANH  GIR FLDDLK+RPDLRNE+FLSHAIVLYGQANMLDHAIRTFTDD++P RSVK+LNSLLFAS+LAKNYKEVSRIYL+FPK YSIQP++DTYNTVIKA AESGSS S+YSV AEMDRNS++PNVITLNNA+ GFYREEKFE+VGKV+KLMEEKYRV P LSTYNVR+ SLC+LKRSSEAKAL+EGM+CN RKPN V+Y CLIHGFCREGDLEEAKRLFRDMKMRG+ PDG CYFTLVHFLC  GE E+ALEVAKECMGK W PNF+TMK+LVNGLAG SKV+EAKE+IKQIKE+F ENGDKWDEIE+GLSQ
Sbjct:    1 MSVLSRLRHFSTSILSS----NSSTPLTSKQKTRSALRLLKSETNPERILDICRAASLTPESHLDRRAFSLAISKLAAANHFDGIRLFLDDLKSRPDLRNEKFLSHAIVLYGQANMLDHAIRTFTDDISP-RSVKSLNSLLFASLLAKNYKEVSRIYLDFPKTYSIQPDIDTYNTVIKAFAESGSSTSIYSVLAEMDRNSIKPNVITLNNALFGFYREEKFEEVGKVLKLMEEKYRVFPALSTYNVRIQSLCKLKRSSEAKALLEGMVCNRRKPNSVTYACLIHGFCREGDLEEAKRLFRDMKMRGYSPDGECYFTLVHFLCRAGELEAALEVAKECMGKGWVPNFTTMKNLVNGLAGASKVNEAKEVIKQIKEKFAENGDKWDEIESGLSQ 387
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3VH33|A0A1S3VH33_VIGRR (Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Vigna radiata var. radiata OX=3916 GN=LOC106775072 PE=3 SV=1)

HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0
Identity = 324/392 (82.65%), Postives = 360/392 (91.84%), Query Frame = 0 
Query:    1 MSVLSRLRHYSSSTASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ 392
            MSVLSRLRH+S+S  SS    NSS+PLTSKQKTRSAL LLKSE+NPERILDICRAASL+P+ HLDRRAFSLA+SKL+AANH  GIR FLDDLK+RPDLRNE+FLSHAIVLYGQANMLDHA+RTFT+DL+ PRSVK+LNSLLFAS+LAKNYKEVSRIYL+FPK YSIQP+VDTYNTVIKA AESGSS S+YSV AEMDRNSV+PNVITLNN++ GFYREEKFE+VGKV+KLMEEKYRV P LSTYNVR+ SLC+LKRSSEAKAL+EGM+CN RKPN V+Y CLIHGFCREGDLEEAKRLFRDMKMRG+ PDG CYFTLVHFLC  GEFE+ALEVA+ECMGK W PNF+TMK LVNGLAG SKVDEAKE+IK+IKE+F ENGDKWDEIE+GLSQ
Sbjct:    1 MSVLSRLRHFSTSILSS----NSSTPLTSKQKTRSALRLLKSETNPERILDICRAASLTPESHLDRRAFSLAVSKLAAANHFDGIRLFLDDLKSRPDLRNEKFLSHAIVLYGQANMLDHALRTFTEDLSSPRSVKSLNSLLFASLLAKNYKEVSRIYLDFPKTYSIQPDVDTYNTVIKAFAESGSSTSIYSVLAEMDRNSVKPNVITLNNSLFGFYREEKFEEVGKVLKLMEEKYRVFPALSTYNVRIQSLCKLKRSSEAKALLEGMVCNRRKPNSVTYACLIHGFCREGDLEEAKRLFRDMKMRGYSPDGECYFTLVHFLCRAGEFEAALEVAQECMGKGWVPNFTTMKDLVNGLAGASKVDEAKEVIKKIKEKFAENGDKWDEIESGLSQ 388
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8JNX7|A0A8B8JNX7_ABRPR (Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Abrus precatorius OX=3816 GN=LOC113848040 PE=3 SV=1)

HSP 1 Score: 602.053 bits (1551), Expect = 0.000e+0
Identity = 300/396 (75.76%), Postives = 337/396 (85.10%), Query Frame = 0 
Query:    1 MSVLSRLR----HYSSSTASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ 392
            MS LSRLR    HYS+     ILSP SS+PLTSKQK+RSAL LL +ESNPERI++ICRAASL+ + HLDRRA SLAI+KLSAANH  GIR FLD+LK+R DLR ERFLSHAIVLYGQANML+H++RTF  DL P RSVK+LN+LLFAS+LAKNYKEVSRIYLEFPKIY I+PNVDTYN VIK  AESGSS SVYS+  EMDRNSV+PN  TLNN I GFYREEKFE+VGKVMKLMEEKYRV PGLSTYNVR+ SLC+LKRSSEAKAL+EGM+C GRKPN VSY  LIHGFCREG+LEEAKRLFR+MK RG+VP   CYFTLVHFLC+GG+F+SAL VA E M K W PNF+TMK+LVNGL G SK+D+A+ELIKQIKE+F  N DKWDEIE GL Q
Sbjct:    1 MSTLSRLRQAFRHYST-----ILSPTSSTPLTSKQKSRSALRLLGTESNPERIIEICRAASLTLESHLDRRALSLAITKLSAANHFDGIRRFLDELKSRSDLRTERFLSHAIVLYGQANMLEHSLRTFDSDLAPSRSVKSLNALLFASLLAKNYKEVSRIYLEFPKIYLIKPNVDTYNIVIKGFAESGSSSSVYSILDEMDRNSVKPNSTTLNNCIGGFYREEKFEEVGKVMKLMEEKYRVFPGLSTYNVRIQSLCKLKRSSEAKALLEGMVCGGRKPNSVSYCYLIHGFCREGNLEEAKRLFREMKRRGYVPHSECYFTLVHFLCQGGDFDSALGVAGESMAKGWVPNFTTMKNLVNGLVGASKIDDARELIKQIKEKFTANSDKWDEIEGGLPQ 391
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151U0K9|A0A151U0K9_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_005462 PE=3 SV=1)

HSP 1 Score: 581.637 bits (1498), Expect = 0.000e+0
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0 
Query:  116 MLDHAIRTFTDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ 392
            MLDHAIRTFTDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ
Sbjct:    1 MLDHAIRTFTDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ 277
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8LE47|PPR87_ARATH (Small ribosomal subunit protein mS86 (rPPR1) OS=Arabidopsis thaliana OX=3702 GN=PPR336 PE=2 SV=2)

HSP 1 Score: 440.654 bits (1132), Expect = 6.612e-153
Identity = 221/409 (54.03%), Postives = 303/409 (74.08%), Query Frame = 0 
Query:    1 MSVLSRLRHYSS--------------STASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDD-LKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTD--DLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ 392
            M++LSR+R  +S              S+AS+ILSP+S +PLTSK+K+++AL LLKSE +P+RIL+ICRAASL+PD  +DR AFS A+  L+   H + + + LD  ++ RPDL++ERF +HAIVLY QANMLDH++R F D       R+VK+LN+LLFA ++AK+YKE  R+Y+E PK+Y I+P+++TYN +IK   ESGS+ S YS+ AEM+R  ++PN  +    ISGFY E+K ++VGKV+ +M+++  V  G+STYN+R+ SLC+ K+S EAKAL++GML  G KPN V+Y+ LIHGFC E D EEAK+LF+ M  RG  PD  CYFTL+++LC+GG+FE+AL + KE M KNW P+FS MKSLVNGLA  SKV+EAKELI Q+KE+F  N + W+E+EA L Q
Sbjct:    1 MALLSRIRSSTSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDPDRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFAAHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPKMYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSDEVGKVLAMMKDR-GVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLIHGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVPSFSIMKSLVNGLAKDSKVEEAKELIGQVKEKFTRNVELWNEVEAALPQ 408
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9SAB4|PPR33_ARATH (Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g11630 PE=1 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 2.593e-134
Identity = 199/382 (52.09%), Postives = 278/382 (72.77%), Query Frame = 0 
Query:   13 STASSILSPNSSSPLTSKQK-TRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDD-LKTRPDLRNERFLSHAIVLYGQANMLDHAIRTF--TDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGL 390
            S++SSI +  S   LTSKQK +R  L LLKSE+NP+RIL+ICR+ SLSPDYH+DR  FS+A+  L+   H   +   LD  ++ +PD ++E F   AI+LYG+ANMLD +I+TF   +    PR+VK+LN+LLFA ++AK+YKE +R+YLE PK+Y I+P+++TYN +I+ L ESGS+ S YS+ AEM+R  ++P   +    I GFY+EEKF++V KVM++M+E + V  G++TYN+ +  LC+ K+S+EAKAL++G++    +PN V+Y+ LIHGFC E +L+EA  LF  M   G+ PD  CYFTL+H LC+GG+FE+AL + +E M KNW P+FS MK LVNGLA  SKVDEAKELI  +KE+F  N D W+E+EA L
Sbjct:   24 SSSSSIFTLKS---LTSKQKKSRDTLSLLKSENNPDRILEICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVRKVMRMMDE-FGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEKFTRNVDLWNEVEAAL 401
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8GW57|PP134_ARATH (Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80150 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 5.928e-54
Identity = 118/378 (31.22%), Postives = 194/378 (51.32%), Query Frame = 0 
Query:    4 LSRLRHYSSSTASSI--LSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTF--TDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFP 377
            + R  H+ SS A+ I  +S  S+     K     AL  LKSE +PE++ ++ +A + +     +R AF   +S+L+ A  L  I   L+  KT P  R E F+   I+LYG+A M   A+ TF   D     RSVK+ N+ L       +   +     + P  Y I  +  ++N  IK+  E G  D  Y    EM+++ + P+V+T    IS  Y+ E+      +  LM  K    P L+T+NVR+  L   +R+ +A  L+  M     +P+ ++YN +I GF      + A+R++  M  +G+ P+   Y T++H+LC+ G F+ A  + K+CM K WYPN  T++ L+ GL    ++D+AK +++ +  R P
Sbjct:    7 IRRFCHFPSSAATGIAYVSTESNQIQGLKPLEEPALVKLKSERDPEKLYNLFKANATNRLVIENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGFIVRIIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERCVIGNGLWNLMVLK-GCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQVEPDSITYNMVIKGFFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPNLDTVEMLLKGLVKKGQLDQAKSIMELVHRRVP 383
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9LG23|PPR82_ARATH (Small ribosomal subunit protein mS78 (rPPR3a) OS=Arabidopsis thaliana OX=3702 GN=At1g55890 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.799e-52
Identity = 112/369 (30.35%), Postives = 199/369 (53.93%), Query Frame = 0 
Query:    7 LRHYSSSTASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTD--DLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIK 373
            +R +SS  A++++S  ++         +S   L+  E NP+RI++  + A  S  +  +   +   + +L AA  L  +   L++ K   D+  E F +  I LYG+A M ++A + F +  +    RSV + N+LL A  L+K +  V  ++ E P   SI+P++ +YNT+IKAL E  S     ++  E++   ++P+++T N  +   Y + +FE   ++   M EK  V   + TYN R+L L    +S E   L   +  +G KP+  S+N +I G   EG ++EA+  ++++   G+ PD A +  L+  +C+ G+FESA+E+ KE   K +    +T++ LV+ L   SK +EA+E++K  K
Sbjct:   17 IRRFSS--AATVVSEPTAVTAAISPPQKSLTSLVNGERNPKRIVEKFKKACESERFRTNIAVYDRTVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEK-NVAIDIRTYNARLLGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYRPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQTTLQQLVDELVKGSKREEAEEIVKIAK 382
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9LK58|PP225_ARATH (Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana OX=3702 GN=At3g13150 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.003e-51
Identity = 101/307 (32.90%), Postives = 170/307 (55.37%), Query Frame = 0 
Query:   69 FSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTD--DLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIK 373
            +S  I +L  A   + I   L   K   D+++E F+   ++LYG + M +HA + F +  +L   R+VK+ N+LL A + +K   E  + + E P+   I P++ TYNT+IKAL   GS D + S+F E+++N   P++I+ N  +  FYR E F +  ++  LM+ K  + P + +YN R+  L R K+ ++A  L++ M   G  P+  +YN LI  +  + +LEE  + + +MK +G  PD   Y  L+  LC+ G+ + A+EV++E +        +  K +V  L G  K+DEA +L+K  K
Sbjct:   90 YSAFIRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSK-NLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQLVKNGK 395

HSP 2 Score: 73.9442 bits (180), Expect = 4.871e-13
Identity = 47/193 (24.35%), Postives = 89/193 (46.11%), Query Frame = 0 
Query:  183 SGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKER 375
            SG ++  + +F EM   +    V + N  +S +   +K ++  K  K + EK  + P L TYN  + +LCR     +  ++ E +  NG +P+ +S+N L+  F R     E  R++  MK +   P+   Y + V  L    +F  AL +      +   P+  T  +L+      + ++E  +   ++KE+
Sbjct:  135 SGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEK 327
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9M065|PP352_ARATH (Small ribosomal subunit protein mL103 (rPPR7) OS=Arabidopsis thaliana OX=3702 GN=At4g36680 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.031e-48
Identity = 114/382 (29.84%), Postives = 196/382 (51.31%), Query Frame = 0 
Query:   15 ASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDI-CRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTF--TDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYS-IQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSE-AKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENG-DKWDEIEAGL 390
            AS+     +++P + K     A   L+ E +P++ L I    +  S      R A  L + +L+     + I   ++  K  P ++ E F S  I  YGQA+M +HA+RTF   D    PRS  + N+LL A + +KN+ +V +++ E P+ Y+ I P+  +Y  +IK+  +SG+ +    +  +M    +    I     +S  Y++ + E    +   M +K   L   + YNVR++S    K S E  K L+E M   G KP+ +SYN L+  +C  G L+EAK+++  ++     P+ A + TL+  LC    +E    + K+ +  +  P+F+T+K LV GL    K D+AK LI+ +K++FP +  + W ++E  L
Sbjct:   15 ASAAADGTTTAPSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSASPVSSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDN-AAYNVRIMSA--QKESPERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKRDDAKGLIRTVKKKFPPSFLNAWKKLEEEL 393
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9LK57|PP226_ARATH (Small ribosomal subunit protein mS79 (rPPR3b) OS=Arabidopsis thaliana OX=3702 GN=At3g13160 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 7.780e-45
Identity = 109/382 (28.53%), Postives = 195/382 (51.05%), Query Frame = 0 
Query:    1 MSVLSR--LR---HYSSSTASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTDDLTPPRSVK----TLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIK 373
            MS LSR  LR    +S+ T     S  +++  T      S + L+  E +P+ I +  + A  +  +  +   +   + +L+AA     +   L++    P++  E F++  I LYG+  M ++A + F  D  P R+ K    + N+LL A + +K +  V  I+ E P   SI+P+V +YNT+IK L   GS     ++  E++   ++P+ IT N  +   Y + KFE+  ++   M EK  V   + +YN R+L L    +S E  +L + +  N  KP+  ++  +I GF  EG L+EA   +++++  G  P    + +L+  +C+ G+ ESA E+ KE   K    + + ++ +V+ L   SK DEA+E+++  K
Sbjct:    1 MSSLSRFLLRGNFSFSTHTNRRFFSAVTAAAATPSPPKPSLITLVNDERDPKFITEKFKKACQAEWFRKNIAVYERTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVF--DEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEK-NVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQEVVDALVKGSKQDEAEEIVELAK 379

HSP 2 Score: 66.6254 bits (161), Expect = 9.204e-11
Identity = 45/199 (22.61%), Postives = 91/199 (45.73%), Query Frame = 0 
Query:  176 VIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKE 374
            +I      G  ++   VF EM   + +   ++ N  ++     +KF+ V  + K +  K  + P +++YN  +  LC     +EA AL++ +   G KP+ +++N L+H    +G  EE ++++  M  +    D   Y   +  L    + E  + +  +  G    P+  T  +++ G     K+DEA    K+I++
Sbjct:  112 IINLYGRVGMFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEK 310
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9ZU67|PP162_ARATH (Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g18520 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.304e-44
Identity = 109/386 (28.24%), Postives = 199/386 (51.55%), Query Frame = 0 
Query:   13 STASSILSPNSSSP---LTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRR-AFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTF--TDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYS-IQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPEN-GDKWDEIEAGL 390
            STA+ I S  ++ P     SK K++     L+   +P++ L I ++ S +    L  R A  L + +L+ +   + I   ++  K  P ++ E FLS  I  YG+A+M DHA++ F   D L  PR+V + N+LL A + +  ++ V +++ EFP+ Y+ I P+  +Y  +IK+  +SG  +    +  +M+   V   +I     +   Y+    ++   +   M  K   L   + YNVR+++  + +     K LME M   G KP+ VSYN L+  +C +G + EAK+++  ++     P+ A + TL+  LC  G ++  L V K+    +  P+F T K L  GL   +++++A+ + + +K++FP     +W ++E  L
Sbjct:   15 STATGIDSQTTAYPGAITMSKAKSK-----LRKVQDPDKALAIYKSVSNNSTSPLSSRYAMELTVQRLAKSQRFSDIEALIESHKNNPKIKTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDN-TVYNVRLMNAAK-ESPERVKELMEEMSSVGLKPDTVSYNYLMTAYCVKGMMSEAKKVYEGLEQ----PNAATFRTLIFHLCINGLYDQGLTVFKKSAIVHKIPDFKTCKHLTEGLVKNNRMEDARGVARIVKKKFPPRLVTEWKKLEEKL 389
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8LDU5|PP298_ARATH (Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g01400 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.287e-33
Identity = 104/395 (26.33%), Postives = 182/395 (46.08%), Query Frame = 0 
Query:    1 MSVLSRLRHYSSST--ASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTD----DLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYR--VLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQI-KERFPENGDKWDEI 386
            +S  SR   YSSS   A   +  N  SP+ S  + +    L+ S+S+P    +I   AS  P++   R +  + I KL    +   I   L   ++          ++ I +Y +A + +  + TF      + TP    K LN +L   +  + Y + +    +  +++ + PN  +YN +++A   +      Y +F +M    V P+V +    I GF R+ +   V   M+L+++      +P   +Y   + SLCR  +  EA  L+  M   G  P+ V YN +I GFCRE    +A+++  DM   G  P+   Y TL+  LC+ G F+   +  +E + K + P+FS    LV G     KV+EA ++++ + K     + D W+ +
Sbjct:   20 LSTSSRFLFYSSSEHEARKPIVSNPKSPIGSPTRVQK---LIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTP--QPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQ---VNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMV 406
[Close]
BLAST of Cc_v2.0_19537.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9FFE3|PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.287e-31
Identity = 90/354 (25.42%), Postives = 169/354 (47.74%), Query Frame = 0 
Query:   26 PLTSKQKTRSALHLLKSESNPERILDICRAASLS-PDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLK-TRPDLR-NERFLSHAIVLYGQANMLDHAIRTF--TDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKE 374
            P   +   +  + ++  + N +  L I   A  S P +  +   +   + KLS A     +   + DL+ + P ++  E      +  YG A   + ++R F    D    RSV++LN+LL   I  + +  V  ++    + + I PN+ T N ++KAL +    +S Y V  E+    + PN++T    + G+      E   +V++ M ++    P  +TY V M   C+L R SEA  +M+ M  N  +PN V+Y  +I   C+E    EA+ +F +M  R F+PD +    ++  LCE  + + A  + ++ +  N  P+ + + +L++ L    +V EA++L  + ++
Sbjct:   42 PWPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDR-GWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEK 394

HSP 2 Score: 86.6557 bits (213), Expect = 3.353e-17
Identity = 58/241 (24.07%), Postives = 113/241 (46.89%), Query Frame = 0 
Query:  136 TLNSLLFASILAKNYKEVSRIYLEFPKIYS-IQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKER 375
            T +S+LF    A+ +  V  +  +    Y  I+   + +  +++    +G  +S   +F  +    V+ +V +LN  ++   + ++F+ V  + K  +E + + P + T N+ + +LC+      A  +++ +   G  PN V+Y  ++ G+   GD+E AKR+  +M  RG+ PD   Y  L+   C+ G F  A  V  +       PN  T   ++  L    K  EA+ +  ++ ER
Sbjct:   85 TYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLER 325

HSP 3 Score: 84.7297 bits (208), Expect = 1.470e-16
Identity = 57/204 (27.94%), Postives = 98/204 (48.04%), Query Frame = 0 
Query:  166 IQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELI 369
            I+PN  TY  +I+AL +   S    ++F EM   S  P+       I     + K ++   + + M  K   +P  +  +  +  LC+  R +EA+ L +     G  P+ ++YN LI G C +G+L EA RL+ DM  R   P+   Y  L+  L + G  +  + V +E +    +PN +T   L  GL  + K ++A +++
Sbjct:  292 IEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKML-KNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFE-KGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIV 493
[Close]
BLAST of Cc_v2.0_19537.1 vs. Araport11
Match: | (Symbols: rPPR1, PPR336 | pentatricopeptide repeat 336, ribosomal PPR protein 1 | chr1:22865326-22866552 REVERSE LENGTH=408)

HSP 1 Score: 440.654 bits (1132), Expect = 6.916e-154
Identity = 221/409 (54.03%), Postives = 303/409 (74.08%), Query Frame = 0 
Query:    1 MSVLSRLRHYSS--------------STASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDD-LKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTD--DLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ 392
            M++LSR+R  +S              S+AS+ILSP+S +PLTSK+K+++AL LLKSE +P+RIL+ICRAASL+PD  +DR AFS A+  L+   H + + + LD  ++ RPDL++ERF +HAIVLY QANMLDH++R F D       R+VK+LN+LLFA ++AK+YKE  R+Y+E PK+Y I+P+++TYN +IK   ESGS+ S YS+ AEM+R  ++PN  +    ISGFY E+K ++VGKV+ +M+++  V  G+STYN+R+ SLC+ K+S EAKAL++GML  G KPN V+Y+ LIHGFC E D EEAK+LF+ M  RG  PD  CYFTL+++LC+GG+FE+AL + KE M KNW P+FS MKSLVNGLA  SKV+EAKELI Q+KE+F  N + W+E+EA L Q
Sbjct:    1 MALLSRIRSSTSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDPDRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFAAHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPKMYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSDEVGKVLAMMKDR-GVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLIHGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVPSFSIMKSLVNGLAKDSKVEEAKELIGQVKEKFTRNVELWNEVEAALPQ 408
[Close]
BLAST of Cc_v2.0_19537.1 vs. Araport11
Match: | (Symbols: PPR336L | pentatricopeptide repeat 336 | chr1:3913168-3914385 REVERSE LENGTH=405)

HSP 1 Score: 393.275 bits (1009), Expect = 2.710e-135
Identity = 199/382 (52.09%), Postives = 278/382 (72.77%), Query Frame = 0 
Query:   13 STASSILSPNSSSPLTSKQK-TRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDD-LKTRPDLRNERFLSHAIVLYGQANMLDHAIRTF--TDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGL 390
            S++SSI +  S   LTSKQK +R  L LLKSE+NP+RIL+ICR+ SLSPDYH+DR  FS+A+  L+   H   +   LD  ++ +PD ++E F   AI+LYG+ANMLD +I+TF   +    PR+VK+LN+LLFA ++AK+YKE +R+YLE PK+Y I+P+++TYN +I+ L ESGS+ S YS+ AEM+R  ++P   +    I GFY+EEKF++V KVM++M+E + V  G++TYN+ +  LC+ K+S+EAKAL++G++    +PN V+Y+ LIHGFC E +L+EA  LF  M   G+ PD  CYFTL+H LC+GG+FE+AL + +E M KNW P+FS MK LVNGLA  SKVDEAKELI  +KE+F  N D W+E+EA L
Sbjct:   24 SSSSSIFTLKS---LTSKQKKSRDTLSLLKSENNPDRILEICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVRKVMRMMDE-FGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEKFTRNVDLWNEVEAAL 401
[Close]
BLAST of Cc_v2.0_19537.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:30148738-30149931 FORWARD LENGTH=397)

HSP 1 Score: 186.808 bits (473), Expect = 6.138e-55
Identity = 118/378 (31.22%), Postives = 194/378 (51.32%), Query Frame = 0 
Query:    4 LSRLRHYSSSTASSI--LSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTF--TDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFP 377
            + R  H+ SS A+ I  +S  S+     K     AL  LKSE +PE++ ++ +A + +     +R AF   +S+L+ A  L  I   L+  KT P  R E F+   I+LYG+A M   A+ TF   D     RSVK+ N+ L       +   +     + P  Y I  +  ++N  IK+  E G  D  Y    EM+++ + P+V+T    IS  Y+ E+      +  LM  K    P L+T+NVR+  L   +R+ +A  L+  M     +P+ ++YN +I GF      + A+R++  M  +G+ P+   Y T++H+LC+ G F+ A  + K+CM K WYPN  T++ L+ GL    ++D+AK +++ +  R P
Sbjct:    7 IRRFCHFPSSAATGIAYVSTESNQIQGLKPLEEPALVKLKSERDPEKLYNLFKANATNRLVIENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGFIVRIIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERCVIGNGLWNLMVLK-GCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQVEPDSITYNMVIKGFFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPNLDTVEMLLKGLVKKGQLDQAKSIMELVHRRVP 383
[Close]
BLAST of Cc_v2.0_19537.1 vs. Araport11
Match: | (Symbols: RPPR3a | Ribosomal Pentatricopeptide Repeat Protein 3a | chr1:20901364-20902560 FORWARD LENGTH=398)

HSP 1 Score: 182.956 bits (463), Expect = 1.862e-53
Identity = 112/369 (30.35%), Postives = 199/369 (53.93%), Query Frame = 0 
Query:    7 LRHYSSSTASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTD--DLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIK 373
            +R +SS  A++++S  ++         +S   L+  E NP+RI++  + A  S  +  +   +   + +L AA  L  +   L++ K   D+  E F +  I LYG+A M ++A + F +  +    RSV + N+LL A  L+K +  V  ++ E P   SI+P++ +YNT+IKAL E  S     ++  E++   ++P+++T N  +   Y + +FE   ++   M EK  V   + TYN R+L L    +S E   L   +  +G KP+  S+N +I G   EG ++EA+  ++++   G+ PD A +  L+  +C+ G+FESA+E+ KE   K +    +T++ LV+ L   SK +EA+E++K  K
Sbjct:   17 IRRFSS--AATVVSEPTAVTAAISPPQKSLTSLVNGERNPKRIVEKFKKACESERFRTNIAVYDRTVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEK-NVAIDIRTYNARLLGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYRPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQTTLQQLVDELVKGSKREEAEEIVKIAK 382
[Close]
BLAST of Cc_v2.0_19537.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:4227975-4229630 REVERSE LENGTH=551)

HSP 1 Score: 182.57 bits (462), Expect = 5.143e-52
Identity = 101/307 (32.90%), Postives = 170/307 (55.37%), Query Frame = 0 
Query:   69 FSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTD--DLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIK 373
            +S  I +L  A   + I   L   K   D+++E F+   ++LYG + M +HA + F +  +L   R+VK+ N+LL A + +K   E  + + E P+   I P++ TYNT+IKAL   GS D + S+F E+++N   P++I+ N  +  FYR E F +  ++  LM+ K  + P + +YN R+  L R K+ ++A  L++ M   G  P+  +YN LI  +  + +LEE  + + +MK +G  PD   Y  L+  LC+ G+ + A+EV++E +        +  K +V  L G  K+DEA +L+K  K
Sbjct:   90 YSAFIRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSK-NLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQLVKNGK 395

HSP 2 Score: 73.9442 bits (180), Expect = 4.930e-14
Identity = 47/193 (24.35%), Postives = 89/193 (46.11%), Query Frame = 0 
Query:  183 SGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKER 375
            SG ++  + +F EM   +    V + N  +S +   +K ++  K  K + EK  + P L TYN  + +LCR     +  ++ E +  NG +P+ +S+N L+  F R     E  R++  MK +   P+   Y + V  L    +F  AL +      +   P+  T  +L+      + ++E  +   ++KE+
Sbjct:  135 SGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEK 327
[Close]
BLAST of Cc_v2.0_19537.1 vs. Araport11
Match: | (Symbols: RPPR7 | Ribosomal Pentatricopeptide Repeat Protein 7 | chr4:17292479-17293717 REVERSE LENGTH=412)

HSP 1 Score: 170.629 bits (431), Expect = 9.533e-49
Identity = 111/381 (29.13%), Postives = 195/381 (51.18%), Query Frame = 0 
Query:   15 ASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDI-CRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTF--TDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYS-IQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPENG-DKWDEIEAGL 390
            AS+     +++P + K     A   L+ E +P++ L I    +  S      R A  L + +L+     + I   ++  K  P ++ E F S  I  YGQA+M +HA+RTF   D    PRS  + N+LL A + +KN+ +V +++ E P+ Y+ I P+  +Y  +IK+  +SG+ +    +  +M    +    I     +S  Y++ + E    +   M +K   L   + YNVR++S  + +     K L+E M   G KP+ +SYN L+  +C  G L+EAK+++  ++     P+ A + TL+  LC    +E    + K+ +  +  P+F+T+K LV GL    K D+AK LI+ +K++FP +  + W ++E  L
Sbjct:   15 ASAAADGTTTAPSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSASPVSSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDN-AAYNVRIMS-AQKESPERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKRDDAKGLIRTVKKKFPPSFLNAWKKLEEEL 393
[Close]
BLAST of Cc_v2.0_19537.1 vs. Araport11
Match: | (Symbols: RPPR3b | Ribosomal Pentatricopeptide Repeat Protein 3b | chr3:4229994-4231178 REVERSE LENGTH=394)

HSP 1 Score: 162.54 bits (410), Expect = 8.035e-46
Identity = 109/382 (28.53%), Postives = 195/382 (51.05%), Query Frame = 0 
Query:    1 MSVLSR--LR---HYSSSTASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTDDLTPPRSVK----TLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIK 373
            MS LSR  LR    +S+ T     S  +++  T      S + L+  E +P+ I +  + A  +  +  +   +   + +L+AA     +   L++    P++  E F++  I LYG+  M ++A + F  D  P R+ K    + N+LL A + +K +  V  I+ E P   SI+P+V +YNT+IK L   GS     ++  E++   ++P+ IT N  +   Y + KFE+  ++   M EK  V   + +YN R+L L    +S E  +L + +  N  KP+  ++  +I GF  EG L+EA   +++++  G  P    + +L+  +C+ G+ ESA E+ KE   K    + + ++ +V+ L   SK DEA+E+++  K
Sbjct:    1 MSSLSRFLLRGNFSFSTHTNRRFFSAVTAAAATPSPPKPSLITLVNDERDPKFITEKFKKACQAEWFRKNIAVYERTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVF--DEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEK-NVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQEVVDALVKGSKQDEAEEIVELAK 379

HSP 2 Score: 66.6254 bits (161), Expect = 9.337e-12
Identity = 45/199 (22.61%), Postives = 91/199 (45.73%), Query Frame = 0 
Query:  176 VIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKE 374
            +I      G  ++   VF EM   + +   ++ N  ++     +KF+ V  + K +  K  + P +++YN  +  LC     +EA AL++ +   G KP+ +++N L+H    +G  EE ++++  M  +    D   Y   +  L    + E  + +  +  G    P+  T  +++ G     K+DEA    K+I++
Sbjct:  112 IINLYGRVGMFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEK 310
[Close]
BLAST of Cc_v2.0_19537.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:8034036-8035292 REVERSE LENGTH=418)

HSP 1 Score: 160.614 bits (405), Expect = 7.532e-45
Identity = 109/386 (28.24%), Postives = 199/386 (51.55%), Query Frame = 0 
Query:   13 STASSILSPNSSSP---LTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRR-AFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTF--TDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYS-IQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKERFPEN-GDKWDEIEAGL 390
            STA+ I S  ++ P     SK K++     L+   +P++ L I ++ S +    L  R A  L + +L+ +   + I   ++  K  P ++ E FLS  I  YG+A+M DHA++ F   D L  PR+V + N+LL A + +  ++ V +++ EFP+ Y+ I P+  +Y  +IK+  +SG  +    +  +M+   V   +I     +   Y+    ++   +   M  K   L   + YNVR+++  + +     K LME M   G KP+ VSYN L+  +C +G + EAK+++  ++     P+ A + TL+  LC  G ++  L V K+    +  P+F T K L  GL   +++++A+ + + +K++FP     +W ++E  L
Sbjct:   15 STATGIDSQTTAYPGAITMSKAKSK-----LRKVQDPDKALAIYKSVSNNSTSPLSSRYAMELTVQRLAKSQRFSDIEALIESHKNNPKIKTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDN-TVYNVRLMNAAK-ESPERVKELMEEMSSVGLKPDTVSYNYLMTAYCVKGMMSEAKKVYEGLEQ----PNAATFRTLIFHLCINGLYDQGLTVFKKSAIVHKIPDFKTCKHLTEGLVKNNRMEDARGVARIVKKKFPPRLVTEWKKLEEKL 389
[Close]
BLAST of Cc_v2.0_19537.1 vs. Araport11
Match: | (Symbols: MISF74 | Mitochondrial Intron Splicing Factor 74 | chr4:575843-577243 REVERSE LENGTH=466)

HSP 1 Score: 132.88 bits (333), Expect = 2.342e-34
Identity = 104/395 (26.33%), Postives = 182/395 (46.08%), Query Frame = 0 
Query:    1 MSVLSRLRHYSSST--ASSILSPNSSSPLTSKQKTRSALHLLKSESNPERILDICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRNERFLSHAIVLYGQANMLDHAIRTFTD----DLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYR--VLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQI-KERFPENGDKWDEI 386
            +S  SR   YSSS   A   +  N  SP+ S  + +    L+ S+S+P    +I   AS  P++   R +  + I KL    +   I   L   ++          ++ I +Y +A + +  + TF      + TP    K LN +L   +  + Y + +    +  +++ + PN  +YN +++A   +      Y +F +M    V P+V +    I GF R+ +   V   M+L+++      +P   +Y   + SLCR  +  EA  L+  M   G  P+ V YN +I GFCRE    +A+++  DM   G  P+   Y TL+  LC+ G F+   +  +E + K + P+FS    LV G     KV+EA ++++ + K     + D W+ +
Sbjct:   20 LSTSSRFLFYSSSEHEARKPIVSNPKSPIGSPTRVQK---LIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTP--QPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQ---VNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMV 406
[Close]
BLAST of Cc_v2.0_19537.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:5368034-5369641 FORWARD LENGTH=535)

HSP 1 Score: 127.872 bits (320), Expect = 3.350e-32
Identity = 90/354 (25.42%), Postives = 169/354 (47.74%), Query Frame = 0 
Query:   26 PLTSKQKTRSALHLLKSESNPERILDICRAASLS-PDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLK-TRPDLR-NERFLSHAIVLYGQANMLDHAIRTF--TDDLTPPRSVKTLNSLLFASILAKNYKEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKE 374
            P   +   +  + ++  + N +  L I   A  S P +  +   +   + KLS A     +   + DL+ + P ++  E      +  YG A   + ++R F    D    RSV++LN+LL   I  + +  V  ++    + + I PN+ T N ++KAL +    +S Y V  E+    + PN++T    + G+      E   +V++ M ++    P  +TY V M   C+L R SEA  +M+ M  N  +PN V+Y  +I   C+E    EA+ +F +M  R F+PD +    ++  LCE  + + A  + ++ +  N  P+ + + +L++ L    +V EA++L  + ++
Sbjct:   42 PWPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDR-GWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEK 394

HSP 2 Score: 86.6557 bits (213), Expect = 3.396e-18
Identity = 58/241 (24.07%), Postives = 113/241 (46.89%), Query Frame = 0 
Query:  136 TLNSLLFASILAKNYKEVSRIYLEFPKIYS-IQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELIKQIKER 375
            T +S+LF    A+ +  V  +  +    Y  I+   + +  +++    +G  +S   +F  +    V+ +V +LN  ++   + ++F+ V  + K  +E + + P + T N+ + +LC+      A  +++ +   G  PN V+Y  ++ G+   GD+E AKR+  +M  RG+ PD   Y  L+   C+ G F  A  V  +       PN  T   ++  L    K  EA+ +  ++ ER
Sbjct:   85 TYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLER 325

HSP 3 Score: 84.7297 bits (208), Expect = 1.488e-17
Identity = 57/204 (27.94%), Postives = 98/204 (48.04%), Query Frame = 0 
Query:  166 IQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNSVRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLSLCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFRDMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMKSLVNGLAGVSKVDEAKELI 369
            I+PN  TY  +I+AL +   S    ++F EM   S  P+       I     + K ++   + + M  K   +P  +  +  +  LC+  R +EA+ L +     G  P+ ++YN LI G C +G+L EA RL+ DM  R   P+   Y  L+  L + G  +  + V +E +    +PN +T   L  GL  + K ++A +++
Sbjct:  292 IEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKML-KNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFE-KGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIV 493
The following BLAST results are available for this feature:
BLAST of Cc_v2.0_19537.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A445GRZ8|A0A445GRZ8_GLYSO0.000e+081.63Pentatricopeptide repeat-containing protein, mitoc... [more]
tr|I1MFG1|I1MFG1_SOYBN0.000e+081.63Pentacotripeptide-repeat region of PRORP domain-co... [more]
tr|A0A4D6KIM4|A0A4D6KIM4_VIGUN0.000e+083.42Nucleobase:cation symporter-1 OS=Vigna unguiculata... [more]
tr|A0AA86TDH8|A0AA86TDH8_9FABA0.000e+081.12Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|V7BRT8|V7BRT8_PHAVU0.000e+083.93Pentacotripeptide-repeat region of PRORP domain-co... [more]
tr|A0A0S3S3P7|A0A0S3S3P7_PHAAN0.000e+082.91Pentacotripeptide-repeat region of PRORP domain-co... [more]
tr|A0A0L9VEF3|A0A0L9VEF3_PHAAN0.000e+082.91Pentatricopeptide repeat-containing protein OS=Pha... [more]
tr|A0A1S3VH33|A0A1S3VH33_VIGRR0.000e+082.65Pentatricopeptide repeat-containing protein At1g61... [more]
tr|A0A8B8JNX7|A0A8B8JNX7_ABRPR0.000e+075.76Pentatricopeptide repeat-containing protein At1g61... [more]
tr|A0A151U0K9|A0A151U0K9_CAJCA0.000e+0100.00Uncharacterized protein OS=Cajanus cajan OX=3821 G... [more]
back to top
BLAST of Cc_v2.0_19537.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot )
Total hits: 10
Match NameE-valueIdentityDescription
sp|Q8LE47|PPR87_ARATH6.612e-15354.03Small ribosomal subunit protein mS86 (rPPR1) OS=Ar... [more]
sp|Q9SAB4|PPR33_ARATH2.593e-13452.09Pentatricopeptide repeat-containing protein At1g11... [more]
sp|Q8GW57|PP134_ARATH5.928e-5431.22Pentatricopeptide repeat-containing protein At1g80... [more]
sp|Q9LG23|PPR82_ARATH1.799e-5230.35Small ribosomal subunit protein mS78 (rPPR3a) OS=A... [more]
sp|Q9LK58|PP225_ARATH5.003e-5132.90Pentatricopeptide repeat-containing protein At3g13... [more]
sp|Q9M065|PP352_ARATH7.031e-4829.84Small ribosomal subunit protein mL103 (rPPR7) OS=A... [more]
sp|Q9LK57|PP226_ARATH7.780e-4528.53Small ribosomal subunit protein mS79 (rPPR3b) OS=A... [more]
sp|Q9ZU67|PP162_ARATH7.304e-4428.24Pentatricopeptide repeat-containing protein At2g18... [more]
sp|Q8LDU5|PP298_ARATH2.287e-3326.33Pentatricopeptide repeat-containing protein At4g01... [more]
sp|Q9FFE3|PP388_ARATH3.287e-3125.42Pentatricopeptide repeat-containing protein At5g16... [more]
back to top
BLAST of Cc_v2.0_19537.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11)
Total hits: 10
Match NameE-valueIdentityDescription
|6.916e-15454.03Symbols: rPPR1, PPR336 | pentatricopeptide repeat ... [more]
|2.710e-13552.09Symbols: PPR336L | pentatricopeptide repeat 336 | ... [more]
|6.138e-5531.22Symbols: no symbol available | no full name availa... [more]
|1.862e-5330.35Symbols: RPPR3a | Ribosomal Pentatricopeptide Repe... [more]
|5.143e-5232.90Symbols: no symbol available | no full name availa... [more]
|9.533e-4929.13Symbols: RPPR7 | Ribosomal Pentatricopeptide Repea... [more]
|8.035e-4628.53Symbols: RPPR3b | Ribosomal Pentatricopeptide Repe... [more]
|7.532e-4528.24Symbols: no symbol available | no full name availa... [more]
|2.342e-3426.33Symbols: MISF74 | Mitochondrial Intron Splicing Fa... [more]
|3.350e-3225.42Symbols: no symbol available | no full name availa... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableFUNFAMG3DSA:1.25.40.10:FF:001070coord: 228..386
e-value: 7.8E-70
score: 235.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 242..271
e-value: 300.0
score: 13.1
coord: 348..375
e-value: 1300.0
score: 11.1
IPR002885Pentatricopeptide repeatNCBIFAMTIGR00756PPRcoord: 172..205
e-value: 0.0085
score: 27.2
coord: 243..276
e-value: 2.3
score: 19.5
coord: 277..310
e-value: 4.3E-9
score: 47.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 168..216
e-value: 5.8E-7
score: 40.8
coord: 274..322
e-value: 2.2E-11
score: 55.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 169..203
score: 11.41077
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 275..309
score: 14.578587
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 240..274
score: 9.076014
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 29..235
e-value: 1.5E-20
score: 75.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 236..389
e-value: 1.7E-31
score: 111.8
IPR050667Pentatricopeptide repeat-containing proteinPANTHERPTHR47939MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKEcoord: 27..375

Sequences
The following sequences are available for this feature:

mRNA sequence

>drCajCajn.Asha.2.0.Cc_v2.0_19537.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19537.1; Name=Cc_v2.0_19537.1; organism=Cajanus cajan; type=mRNA; length=1179bp
ATGTCCGTTCTGTCCCGCCTCCGCCACTACTCGAGCAGCACCGCCAGCTC
CATCCTCTCCCCGAACTCATCCTCTCCTCTAACCTCGAAGCAGAAGACTC
GCAGCGCCCTCCACCTCCTCAAATCGGAGAGCAACCCCGAGCGCATCCTC
GACATCTGCCGCGCCGCCTCCCTCTCCCCGGACTACCACCTCGACCGCCG
CGCCTTTTCCCTCGCCATCTCCAAGCTCTCCGCCGCCAACCACTTAGCCG
GAATCCGCCACTTCCTCGATGACCTCAAAACCCGTCCCGACCTCCGGAAC
GAGCGCTTCCTCTCCCATGCCATCGTCCTCTACGGCCAAGCCAACATGCT
CGACCACGCCATCAGAACCTTCACCGACGACCTCACTCCCCCTCGCTCCG
TCAAAACCCTAAACTCCCTTCTCTTCGCATCCATCCTCGCCAAGAACTAC
AAAGAGGTATCCCGAATCTACCTCGAATTCCCCAAAATCTATTCAATTCA
ACCTAACGTCGATACTTACAACACTGTTATTAAGGCCTTGGCTGAGTCTG
GTTCGTCTGATTCTGTTTATTCTGTTTTTGCTGAAATGGATAGGAATTCG
GTTAGACCTAATGTGATTACTTTGAATAATGCGATTTCCGGTTTTTACCG
GGAGGAGAAGTTTGAGGATGTGGGGAAGGTGATGAAACTGATGGAGGAGA
AGTATAGGGTTTTACCTGGTCTTAGTACTTACAATGTTAGGATGCTGAGT
TTGTGTAGGTTGAAGAGGTCTTCTGAGGCTAAGGCTTTGATGGAGGGGAT
GCTTTGTAACGGGAGGAAGCCGAATTGGGTTAGCTACAATTGCTTGATTC
ATGGGTTTTGTAGAGAGGGGGACCTTGAGGAGGCCAAGAGGTTGTTTAGG
GACATGAAGATGAGGGGTTTTGTGCCTGATGGGGCGTGTTACTTTACGCT
TGTTCATTTCCTGTGTGAGGGTGGGGAGTTTGAGTCTGCATTGGAGGTTG
CTAAGGAGTGTATGGGGAAGAATTGGTATCCGAATTTTAGTACCATGAAG
AGTCTTGTCAATGGGCTTGCTGGTGTGTCCAAGGTGGATGAGGCCAAGGA
GCTTATTAAGCAGATCAAGGAGAGGTTTCCTGAGAATGGGGACAAGTGGG
ATGAGATTGAGGCTGGGTTGTCTCAATGA
back to top

protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_19537.1

>drCajCajn.Asha.2.0.Cc_v2.0_19537.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19537.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_19537.1; organism=Cajanus cajan; type=polypeptide; length=392bp
MSVLSRLRHYSSSTASSILSPNSSSPLTSKQKTRSALHLLKSESNPERIL
DICRAASLSPDYHLDRRAFSLAISKLSAANHLAGIRHFLDDLKTRPDLRN
ERFLSHAIVLYGQANMLDHAIRTFTDDLTPPRSVKTLNSLLFASILAKNY
KEVSRIYLEFPKIYSIQPNVDTYNTVIKALAESGSSDSVYSVFAEMDRNS
VRPNVITLNNAISGFYREEKFEDVGKVMKLMEEKYRVLPGLSTYNVRMLS
LCRLKRSSEAKALMEGMLCNGRKPNWVSYNCLIHGFCREGDLEEAKRLFR
DMKMRGFVPDGACYFTLVHFLCEGGEFESALEVAKECMGKNWYPNFSTMK
SLVNGLAGVSKVDEAKELIKQIKERFPENGDKWDEIEAGLSQ
back to top

mRNA from alignment at CcLG08_v2.0:54223833..54225605+

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drCajCajn.Asha.2.0.Cc_v2.0_19537.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19537.1; Name=Cc_v2.0_19537.1; organism=Cajanus cajan; type=mRNA; length=1773bp; location=Sequence derived from: CcLG08_v2.0:54223833..54225605+ (Cajanus cajan
CTGTTGACATTTCATTTCACAGCATAAGTGGCACACTCGTGTTTGCTCTC
ATTTTCTTCTTCACCCTAAACCCTAAACCTCCGTCCAAAACCCTAGCCTG
CAACTGCAAGCATGTCCGTTCTGTCCCGCCTCCGCCACTACTCGAGCAGC
ACCGCCAGCTCCATCCTCTCCCCGAACTCATCCTCTCCTCTAACCTCGAA
GCAGAAGACTCGCAGCGCCCTCCACCTCCTCAAATCGGAGAGCAACCCCG
AGCGCATCCTCGACATCTGCCGCGCCGCCTCCCTCTCCCCGGACTACCAC
CTCGACCGCCGCGCCTTTTCCCTCGCCATCTCCAAGCTCTCCGCCGCCAA
CCACTTAGCCGGAATCCGCCACTTCCTCGATGACCTCAAAACCCGTCCCG
ACCTCCGGAACGAGCGCTTCCTCTCCCATGCCATCGTCCTCTACGGCCAA
GCCAACATGCTCGACCACGCCATCAGAACCTTCACCGACGACCTCACTCC
CCCTCGCTCCGTCAAAACCCTAAACTCCCTTCTCTTCGCATCCATCCTCG
CCAAGAACTACAAAGAGGTATCCCGAATCTACCTCGAATTCCCCAAAATC
TATTCAATTCAACCTAACGTCGATACTTACAACACTGTTATTAAGGCCTT
GGCTGAGTCTGGTTCGTCTGATTCTGTTTATTCTGTTTTTGCTGAAATGG
ATAGGAATTCGGTTAGACCTAATGTGATTACTTTGAATAATGCGATTTCC
GGTTTTTACCGGGAGGAGAAGTTTGAGGATGTGGGGAAGGTGATGAAACT
GATGGAGGAGAAGTATAGGGTTTTACCTGGTCTTAGTACTTACAATGTTA
GGATGCTGAGTTTGTGTAGGTTGAAGAGGTCTTCTGAGGCTAAGGCTTTG
ATGGAGGGGATGCTTTGTAACGGGAGGAAGCCGAATTGGGTTAGCTACAA
TTGCTTGATTCATGGGTTTTGTAGAGAGGGGGACCTTGAGGAGGCCAAGA
GGTTGTTTAGGGACATGAAGATGAGGGGTTTTGTGCCTGATGGGGCGTGT
TACTTTACGCTTGTTCATTTCCTGTGTGAGGGTGGGGAGTTTGAGTCTGC
ATTGGAGGTTGCTAAGGAGTGTATGGGGAAGAATTGGTATCCGAATTTTA
GTACCATGAAGAGTCTTGTCAATGGGCTTGCTGGTGTGTCCAAGGTGGAT
GAGGCCAAGGAGCTTATTAAGCAGATCAAGGAGAGGTTTCCTGAGAATGG
GGACAAGTGGGATGAGATTGAGGCTGGGTTGTCTCAATGAGAAAGAGTGG
GGACTCCTTGTGTGATTCTTTGATCAATTGGAAGGGAGCATGGAAAATTA
AATTATGTGTGGGACATCAGCTTTGGAATGGCTTTcttttgttttgccat
ttcctccagcccttggccttttgcATGGTCAATGGTAATCTGTCAAGTTA
ATTTTACATGATCATTATTGTTGGGCATGCTTAGTATTCCTTGTTTGAGT
AATAATAGAATTGGAAAGGGTTATGCAAGTGGATTTCTGTTTGTTTCCAT
TTGTTTTGTCTCTTTAAATTGCATTGTCCCCGTTTTATTAAAAAAGAAGA
CTGATACACTACATGGGAGCTGTTGTTGATATAATAGTTTGTTCAGTCTA
ATTGTTGATCGATTCTACTGAAATTATACACAGTTCTTTGAATAACTTCT
TGAGGCATTTGCTTGTTGTACGATGCTAGTTGTGTAGGTAATGCAGAGCA
GCAGAGTCAATAGTAGGCCCTCA
back to top

Coding sequence (CDS) from alignment at CcLG08_v2.0:54223833..54225605+

>drCajCajn.Asha.2.0.Cc_v2.0_19537.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19537.1; Name=Cc_v2.0_19537.1; organism=Cajanus cajan; type=CDS; length=1179bp; location=Sequence derived from: CcLG08_v2.0:54223833..54225605+ (Cajanus cajan
ATGTCCGTTCTGTCCCGCCTCCGCCACTACTCGAGCAGCACCGCCAGCTC
CATCCTCTCCCCGAACTCATCCTCTCCTCTAACCTCGAAGCAGAAGACTC
GCAGCGCCCTCCACCTCCTCAAATCGGAGAGCAACCCCGAGCGCATCCTC
GACATCTGCCGCGCCGCCTCCCTCTCCCCGGACTACCACCTCGACCGCCG
CGCCTTTTCCCTCGCCATCTCCAAGCTCTCCGCCGCCAACCACTTAGCCG
GAATCCGCCACTTCCTCGATGACCTCAAAACCCGTCCCGACCTCCGGAAC
GAGCGCTTCCTCTCCCATGCCATCGTCCTCTACGGCCAAGCCAACATGCT
CGACCACGCCATCAGAACCTTCACCGACGACCTCACTCCCCCTCGCTCCG
TCAAAACCCTAAACTCCCTTCTCTTCGCATCCATCCTCGCCAAGAACTAC
AAAGAGGTATCCCGAATCTACCTCGAATTCCCCAAAATCTATTCAATTCA
ACCTAACGTCGATACTTACAACACTGTTATTAAGGCCTTGGCTGAGTCTG
GTTCGTCTGATTCTGTTTATTCTGTTTTTGCTGAAATGGATAGGAATTCG
GTTAGACCTAATGTGATTACTTTGAATAATGCGATTTCCGGTTTTTACCG
GGAGGAGAAGTTTGAGGATGTGGGGAAGGTGATGAAACTGATGGAGGAGA
AGTATAGGGTTTTACCTGGTCTTAGTACTTACAATGTTAGGATGCTGAGT
TTGTGTAGGTTGAAGAGGTCTTCTGAGGCTAAGGCTTTGATGGAGGGGAT
GCTTTGTAACGGGAGGAAGCCGAATTGGGTTAGCTACAATTGCTTGATTC
ATGGGTTTTGTAGAGAGGGGGACCTTGAGGAGGCCAAGAGGTTGTTTAGG
GACATGAAGATGAGGGGTTTTGTGCCTGATGGGGCGTGTTACTTTACGCT
TGTTCATTTCCTGTGTGAGGGTGGGGAGTTTGAGTCTGCATTGGAGGTTG
CTAAGGAGTGTATGGGGAAGAATTGGTATCCGAATTTTAGTACCATGAAG
AGTCTTGTCAATGGGCTTGCTGGTGTGTCCAAGGTGGATGAGGCCAAGGA
GCTTATTAAGCAGATCAAGGAGAGGTTTCCTGAGAATGGGGACAAGTGGG
ATGAGATTGAGGCTGGGTTGTCTCAATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_rpt
IPR011990TPR-like_helical_dom_sf
IPR050667PPR-containing_protein
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding