Cc_v2.0_19652.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Cc_v2.0_19652.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151TNF6|A0A151TNF6_CAJCA (DNA ligase OS=Cajanus cajan OX=3821 GN=KK1_022227 PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 4.057e-32 Identity = 85/138 (61.59%), Postives = 96/138 (69.57%), Query Frame = 0 Query: 1 MSKRPSAFDVLMR----AAKKSQSQPPQPSPSPRKRKRKSPHSTSSQNSTILKPLQKPP-------KPKPKPAPPPKNTFRNLSPSSSPSLSKEKKRVSLLNKKPSDFDPATVAWWEKGQPVPFLFLALAFDMISPKS 127 MSKRPSAFD LM AAKKSQSQP QPS SPRKRK SPHSTSSQN +I PL+KPP +P P P + SS + ++ KKR SLL KKPSDFDPA+VAWW+ G+PVPFLFLALAFDMIS +S Sbjct: 32 MSKRPSAFDALMSGARAAAKKSQSQPAQPSSSPRKRK--SPHSTSSQNPSITNPLEKPPKPEPASSEPAPAPKKKLLSLSLPSPSSSEDNTAELKKRASLLKKKPSDFDPASVAWWQNGEPVPFLFLALAFDMISLES 167
BLAST of Cc_v2.0_19652.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7BUY4|V7BUY4_PHAVU (ATP-dependent DNA ligase family profile domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G021200g PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 5.717e-22 Identity = 70/146 (47.95%), Postives = 85/146 (58.22%), Query Frame = 0 Query: 1 MSKRPSAFDVLMRAA-------KKSQSQP--PQPSPSPRKRK----------RKSPHSTSSQNSTILKPLQKPPKPKPKPAPPPKNTFRNLSPSSSPSLSKEKKRVSLLNKKPSDFDPATVAWWEKGQPVPFLFLALAFDMISPKS 127 MSK PSA D LM A K SQS+P P+ S S +KRK RKSPHSTSSQN T+ KP Q KPK P+ + + + + +K+V L +KPS FDPA+V WEKGQPVPFLFLALAFDMI ++ Sbjct: 1 MSKPPSALDFLMSVAAAAAAVKKNSQSKPQTPKLSSSLKKRKSPNSTSVAKKRKSPHSTSSQNPTV-KPEQVL---KPKEVLKPEEVLKAEEAVKAEEVVEMEKQVQQLRQKPSSFDPASVTAWEKGQPVPFLFLALAFDMIDEET 142
BLAST of Cc_v2.0_19652.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8KQ51|A0A8B8KQ51_ABRPR (DNA ligase OS=Abrus precatorius OX=3816 GN=LOC113857904 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.515e-21 Identity = 69/137 (50.36%), Postives = 88/137 (64.23%), Query Frame = 0 Query: 1 MSKRPSAFDVLM---RAAKKSQSQPPQPSPSPRKRKRKSPHSTSSQNSTILK------PLQKPPKP-KPKPAPPPKNTFRNLSPSSSPSLSKEKKRVSLLNKKPSDFDPATVAWWEKGQPVPFLFLALAFDMISPKS 127 MSK PSAFD LM RAA K +S PS +KRKSPHSTS+QN LK P++ +P K P++ R++S SS +++ KKRV L KKPS+FDPA+VA WEK +PVPFLFL LAFDMI+ ++ Sbjct: 39 MSKPPSAFDALMSGARAAAKKKSPQQPQPPSSSPKKRKSPHSTSTQNPNSLKTPLSSSPIETVQQPNKQHETAEPEHKIRHVS-SSQEIVAELKKRVPQLKKKPSEFDPASVACWEKEKPVPFLFLCLAFDMIAEET 174
BLAST of Cc_v2.0_19652.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8KQ45|A0A8B8KQ45_ABRPR (DNA ligase OS=Abrus precatorius OX=3816 GN=LOC113857904 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.701e-21 Identity = 69/137 (50.36%), Postives = 88/137 (64.23%), Query Frame = 0 Query: 1 MSKRPSAFDVLM---RAAKKSQSQPPQPSPSPRKRKRKSPHSTSSQNSTILK------PLQKPPKP-KPKPAPPPKNTFRNLSPSSSPSLSKEKKRVSLLNKKPSDFDPATVAWWEKGQPVPFLFLALAFDMISPKS 127 MSK PSAFD LM RAA K +S PS +KRKSPHSTS+QN LK P++ +P K P++ R++S SS +++ KKRV L KKPS+FDPA+VA WEK +PVPFLFL LAFDMI+ ++ Sbjct: 39 MSKPPSAFDALMSGARAAAKKKSPQQPQPPSSSPKKRKSPHSTSTQNPNSLKTPLSSSPIETVQQPNKQHETAEPEHKIRHVS-SSQEIVAELKKRVPQLKKKPSEFDPASVACWEKEKPVPFLFLCLAFDMIAEET 174
BLAST of Cc_v2.0_19652.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA87B9M4|A0AA87B9M4_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS31447 PE=4 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.732e-21 Identity = 76/158 (48.10%), Postives = 89/158 (56.33%), Query Frame = 0 Query: 1 MSKRPSAFDVLMRAA-----KKSQSQPPQPSPSPRKRKRKSPHSTSSQNSTILK--------PLQKPPKP----KPKPAPPPKNTFR-------------NLSPSSSPSLSKE-KKRVSLLNKKPSDFDPATVAWWEKGQPVPFLFLALAFDMISPKS 127 MSK PSAFD +M A K+SQS+ +P P +KRKSP STSSQN LK L++ KP KP+ P+ T LS SSS + E KK+V L KKPS FDPA+V WEKGQPVPFLFLALAFDMIS +S Sbjct: 1 MSKPPSAFDAIMSGARAAAKKESQSKSREPKPPSISKKRKSPQSTSSQNPKNLKSPSPPTTAELEQAIKPEETVKPEKTVKPEETVELKEAVKPEPWKVGFLSSSSSNVKTVELKKQVPQLKKKPSSFDPASVTAWEKGQPVPFLFLALAFDMISQES 158
BLAST of Cc_v2.0_19652.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7AJQ4|V7AJQ4_PHAVU (DNA ligase OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G085900g PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.638e-21 Identity = 74/163 (45.40%), Postives = 89/163 (54.60%), Query Frame = 0 Query: 1 MSKRPSAFDVLMRAA-----KKSQSQPPQPSPSPRKRKRKSPHSTSSQNS------------TILKPLQKPPKP----------KPKPAPPPKNTF-------RNLSPSSSPSLSKEK--KRVSLLNKKPSDFDPATVAWWEKGQPVPFLFLALAFDMISPKS 127 MSK PSAFD LM A K SQS+P P+ S +KRKSPHS SSQN ++P Q KP KP+ A P+ R+LS S+S + + K+V L +KPS FDPA+V WEKGQPVPFLFLALAFDMIS +S Sbjct: 45 MSKPPSAFDALMSGARAAAKKSSQSKPQTPNLSSSPKKRKSPHSASSQNPSNSKSPKLPSPPVTVEPEQAAVKPEQAVKPEEAVKPEEAVKPEEAIKPEQRKVRHLSSSNSSNGKTVELIKQVPQLKQKPSSFDPASVTAWEKGQPVPFLFLALAFDMISQES 207
BLAST of Cc_v2.0_19652.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9V6F3|A0A0L9V6F3_PHAAN (DNA ligase OS=Phaseolus angularis OX=3914 GN=LR48_Vigan08g146700 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-20 Identity = 71/143 (49.65%), Postives = 85/143 (59.44%), Query Frame = 0 Query: 1 MSKRPSAFDVLMRAAKKSQSQPPQPSPSPRKRKRKSPHSTSSQN------------STILKPLQ---KPPKPKPKPAPPPKNTFRNLSPSSSPSLSKE-KKRVSLLNKKPSDFDPATVAWWEKGQPVPFLFLALAFDMISPKS 127 MSK PSAFD LM AAKK+ SP K KRKSP STSSQN ++P Q + KP+ P R LS SSS ++E KK+V+ L +KPS FDPA++ WEKG+PVPFLFLALAFDMIS +S Sbjct: 1 MSKPPSAFDALMAAAKKNSKSKTSKLSSPPK-KRKSPLSTSSQNPSNPKSPKLPSPPITVEPEQAVKQEEVAKPEAVKPEPRKVRQLSTSSSKGKTEELKKQVAQLKQKPSSFDPASMIAWEKGEPVPFLFLALAFDMISQES 142
BLAST of Cc_v2.0_19652.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3SCM5|A0A0S3SCM5_PHAAN (DNA ligase OS=Vigna angularis var. angularis OX=157739 GN=Vigan.06G176000 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.868e-20 Identity = 71/143 (49.65%), Postives = 85/143 (59.44%), Query Frame = 0 Query: 1 MSKRPSAFDVLMRAAKKSQSQPPQPSPSPRKRKRKSPHSTSSQN------------STILKPLQ---KPPKPKPKPAPPPKNTFRNLSPSSSPSLSKE-KKRVSLLNKKPSDFDPATVAWWEKGQPVPFLFLALAFDMISPKS 127 MSK PSAFD LM AAKK+ SP K KRKSP STSSQN ++P Q + KP+ P R LS SSS ++E KK+V+ L +KPS FDPA++ WEKG+PVPFLFLALAFDMIS +S Sbjct: 44 MSKPPSAFDALMAAAKKNSKSKTSKLSSPPK-KRKSPLSTSSQNPSNPKSPKLPSPPITVEPEQAVKQEEVAKPEAVKPEPRKVRQLSTSSSKGKTEELKKQVAQLKQKPSSFDPASMIAWEKGEPVPFLFLALAFDMISQES 185
BLAST of Cc_v2.0_19652.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T0KD54|A0A8T0KD54_PHAAN (DNA ligase OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0142380 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.868e-20 Identity = 71/143 (49.65%), Postives = 85/143 (59.44%), Query Frame = 0 Query: 1 MSKRPSAFDVLMRAAKKSQSQPPQPSPSPRKRKRKSPHSTSSQN------------STILKPLQ---KPPKPKPKPAPPPKNTFRNLSPSSSPSLSKE-KKRVSLLNKKPSDFDPATVAWWEKGQPVPFLFLALAFDMISPKS 127 MSK PSAFD LM AAKK+ SP K KRKSP STSSQN ++P Q + KP+ P R LS SSS ++E KK+V+ L +KPS FDPA++ WEKG+PVPFLFLALAFDMIS +S Sbjct: 44 MSKPPSAFDALMAAAKKNSKSKTSKLSSPPK-KRKSPLSTSSQNPSNPKSPKLPSPPITVEPEQAVKQEEVAKPEAVKPEPRKVRQLSTSSSKGKTEELKKQVAQLKQKPSSFDPASMIAWEKGEPVPFLFLALAFDMISQES 185
BLAST of Cc_v2.0_19652.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6LHS9|A0A4D6LHS9_VIGUN (DNA ligase OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g2668 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 4.246e-20 Identity = 75/151 (49.67%), Postives = 89/151 (58.94%), Query Frame = 0 Query: 1 MSKRPSAFDVLMRAAKK-SQSQPPQPSPSPRKRKRKSPHSTSSQN------------STILKPLQKPPKPKPKP----------APPPKNTFRNLSPSSSPSLSKE-KKRVSLLNKKPSDFDPATVAWWEKGQPVPFLFLALAFDMISPKS 127 MSK PSAFD LM AAKK S+S+ P+ SP+KRK S STSSQN + ++P Q + KP A P K R LS SSS ++E KK V L +KPS FDPA++ WEKGQPVPFLFLALAFDMIS +S Sbjct: 1 MSKPPSAFDALMSAAKKNSKSKTPKLPSSPKKRK--SSLSTSSQNPSNPKSPKLPSPAITVEPEQAVKQEVVKPEAVKAEEAVKAEPKK--VRQLSSSSSNGKTEELKKLVPRLKQKPSSFDPASMIAWEKGQPVPFLFLALAFDMISQES 147
BLAST of Cc_v2.0_19652.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q42572|DNLI1_ARATH (DNA ligase 1 OS=Arabidopsis thaliana OX=3702 GN=LIG1 PE=2 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 2.461e-17 Identity = 52/142 (36.62%), Postives = 74/142 (52.11%), Query Frame = 0 Query: 2 SKRPSAFDVLMR----AAKKSQSQPPQPSPSPRKRKRKSPHSTSSQNSTI-----------LKPLQKPPKPKPKPAPPPKNTFRNLSPSSSPSLSKE-KKRVSLLNKKPSDFDPATVAWWEKGQPVPFLFLALAFDMISPKS 127 S RPSAFD LM AAKK Q S SP KRK + + + L+P+ P+ + +++ + + S + E K ++ LL KKP+DFDP ++ WEKG+ VPFLF+ALAFD+IS +S Sbjct: 50 SSRPSAFDALMSNARAAAKKKTPQTTNLSRSPNKRKIGETQDANLGKTIVSEGTLPKTEDLLEPVSDSANPRSDTSSIAEDSKTGAKKAKTLSKTDEMKSKIGLLKKKPNDFDPEKMSCWEKGERVPFLFVALAFDLISNES 191
BLAST of Cc_v2.0_19652.1 vs. Araport11
Match: | (Symbols: ATLIG1, LIG1 | DNA ligase 1 | chr1:2542913-2547815 REVERSE LENGTH=790) HSP 1 Score: 80.1073 bits (196), Expect = 2.487e-18 Identity = 52/142 (36.62%), Postives = 74/142 (52.11%), Query Frame = 0 Query: 2 SKRPSAFDVLMR----AAKKSQSQPPQPSPSPRKRKRKSPHSTSSQNSTI-----------LKPLQKPPKPKPKPAPPPKNTFRNLSPSSSPSLSKE-KKRVSLLNKKPSDFDPATVAWWEKGQPVPFLFLALAFDMISPKS 127 S RPSAFD LM AAKK Q S SP KRK + + + L+P+ P+ + +++ + + S + E K ++ LL KKP+DFDP ++ WEKG+ VPFLF+ALAFD+IS +S Sbjct: 50 SSRPSAFDALMSNARAAAKKKTPQTTNLSRSPNKRKIGETQDANLGKTIVSEGTLPKTEDLLEPVSDSANPRSDTSSIAEDSKTGAKKAKTLSKTDEMKSKIGLLKKKPNDFDPEKMSCWEKGERVPFLFVALAFDLISNES 191 The following BLAST results are available for this feature:
BLAST of Cc_v2.0_19652.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Cc_v2.0_19652.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot ) Total hits: 1
BLAST of Cc_v2.0_19652.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11) Total hits: 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >drCajCajn.Asha.2.0.Cc_v2.0_19652.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19652.1; Name=Cc_v2.0_19652.1; organism=Cajanus cajan; type=mRNA; length=387bpback to top protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_19652.1 >drCajCajn.Asha.2.0.Cc_v2.0_19652.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19652.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_19652.1; organism=Cajanus cajan; type=polypeptide; length=128bpback to top mRNA from alignment at CcLG08_v2.0:55745909..55746295- Legend: CDSexonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>drCajCajn.Asha.2.0.Cc_v2.0_19652.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19652.1; Name=Cc_v2.0_19652.1; organism=Cajanus cajan; type=mRNA; length=387bp; location=Sequence derived from: CcLG08_v2.0:55745909..55746295- (Cajanus cajanback to top Coding sequence (CDS) from alignment at CcLG08_v2.0:55745909..55746295- >drCajCajn.Asha.2.0.Cc_v2.0_19652.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19652.1; Name=Cc_v2.0_19652.1; organism=Cajanus cajan; type=CDS; length=387bp; location=Sequence derived from: CcLG08_v2.0:55745909..55746295- (Cajanus cajanback to top |