Cc_v2.0_23291.1

Transcript Overview
NameCc_v2.0_23291.1
Unique NamedrCajCajn.Asha.2.0.Cc_v2.0_23291.1
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length294
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CcLG10_v2.0chromosomeCcLG10_v2.0:1743891..1744882 -Cajanus cajan cv. Asha genome v2.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anccaL0072Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL169Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0590Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0695Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL610Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0859Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0913Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carccaL010Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccapsR110Pisum sativum Cameor genome v1aPisum sativum
ccapsR123Pisum sativum Cameor genome v1aPisum sativum
ccavrvR074Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccapvR094Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavrvR095Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavfhR090Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccavfhR100Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR128Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavssR088Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavssR104Vicia sativa cv. Studenica genome v1.0Vicia sativa
carccaL447Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccavuR080Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR095Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR099Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR124Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavunR073Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR091Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccavunR094Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR122Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cc_v2.0_23291drCajCajn.Asha.2.0.Cc_v2.0_23291Cajanus cajangene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.Cc_v2.0_23291.1drCajCajn.Asha.2.0.cds.Cc_v2.0_23291.1Cajanus cajanCDS
cds.Cc_v2.0_23291.1drCajCajn.Asha.2.0.cds.Cc_v2.0_23291.1_2Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_23291.1.exon2drCajCajn.Asha.2.0.Cc_v2.0_23291.1.exon2Cajanus cajanexon
Cc_v2.0_23291.1.exon1drCajCajn.Asha.2.0.Cc_v2.0_23291.1.exon1Cajanus cajanexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drCajCajn.Asha.2.0.Cc_v2.0_23291.1drCajCajn.Asha.2.0.Cc_v2.0_23291.1Cajanus cajanpolypeptide
drCajCajn.Asha.2.0.Cc_v2.0_23291.1drCajCajn.Asha.2.0.Cc_v2.0_23291.1-proteinCajanus cajanpolypeptide


Homology
[Close]
BLAST of Cc_v2.0_23291.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A371HBU1|A0A371HBU1_MUCPR (TIMELESS-interacting protein OS=Mucuna pruriens OX=157652 GN=TIPIN PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.668e-42
Identity = 77/95 (81.05%), Postives = 84/95 (88.42%), Query Frame = 0 
Query:    1 MFTESENVNDIQEDMLNDICDKATQEPSESMDNVVGTSMASESMAIEKTSEEVQNNGSSQSVKAEITEEQRARMEANRLKALQKRAALAGFSQAS 95
            +F E+ENVNDIQEDMLNDI DKAT+EPS+SM NV+ TSMAS+S AIEKTSEE QNN SSQS KAEITEEQRARMEANRLKALQ+RAA  G SQAS
Sbjct:  192 VFAEAENVNDIQEDMLNDIYDKATEEPSQSMQNVIDTSMASKSNAIEKTSEEAQNNVSSQSDKAEITEEQRARMEANRLKALQRRAARTGLSQAS 286
[Close]
BLAST of Cc_v2.0_23291.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7ADN0|V7ADN0_PHAVU (CCHC-type domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G028100g PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.138e-41
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 0 
Query:    1 MFTESENVNDIQEDMLNDICDKATQEPSESMDNVVGTSMASESMAIEKTSEEVQNNGSSQSVKAEITEEQRARMEANRLKALQKRAALAGFSQAS 95
            +F +SEN+ DIQEDMLNDI DKAT+EPS+S DNV+GTSMAS+S A E T+EEVQNNGSSQS KAEITE+QRARMEANRLKALQ+RAA A  SQA 
Sbjct:  192 VFADSENITDIQEDMLNDIYDKATEEPSQSTDNVIGTSMASKSKATENTAEEVQNNGSSQSGKAEITEDQRARMEANRLKALQRRAARAPSSQAP 286
[Close]
BLAST of Cc_v2.0_23291.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0B2RGC5|A0A0B2RGC5_GLYSO (TIMELESS-interacting protein OS=Glycine soja OX=3848 GN=glysoja_039158 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 7.301e-37
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = 0 
Query:    1 MFTESENVNDIQEDMLNDICDKATQEPSESMDNVVGTSMASESMAIEKTSEEVQNNGSSQSVKAEITEEQRARMEANRLKALQKRA 86
            +F E ENVNDIQEDMLNDI DKAT+EPS+SM NV+GTSMASES A EKTSEE   NGSSQS KAEITEEQRARMEANRLKAL++RA
Sbjct:  210 LFAEFENVNDIQEDMLNDIYDKATEEPSQSMHNVIGTSMASESNATEKTSEE---NGSSQSGKAEITEEQRARMEANRLKALERRA 292
[Close]
BLAST of Cc_v2.0_23291.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445HZB1|A0A445HZB1_GLYSO (TIMELESS-interacting protein OS=Glycine soja OX=3848 GN=D0Y65_029503 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.358e-36
Identity = 70/88 (79.55%), Postives = 77/88 (87.50%), Query Frame = 0 
Query:    1 MFTESENVNDIQEDMLNDICDKATQEPSESMDNVVGTSMASESMAIEKTSEEVQNNGSSQSVKAEITEEQRARMEANRLKALQKRAAL 88
            +F E ENVNDIQEDMLNDI DKAT+EPS+SM NV+GTSMASES A EKTSEE   NGSSQS KAEITEEQRARMEANRLKAL++RA +
Sbjct:  206 LFAEFENVNDIQEDMLNDIYDKATEEPSQSMHNVIGTSMASESNATEKTSEE---NGSSQSGKAEITEEQRARMEANRLKALERRAEI 290
[Close]
BLAST of Cc_v2.0_23291.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1LIR6|I1LIR6_SOYBN (CCHC-type domain-containing protein OS=Glycine max OX=3847 GN=100808422 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.358e-36
Identity = 70/88 (79.55%), Postives = 77/88 (87.50%), Query Frame = 0 
Query:    1 MFTESENVNDIQEDMLNDICDKATQEPSESMDNVVGTSMASESMAIEKTSEEVQNNGSSQSVKAEITEEQRARMEANRLKALQKRAAL 88
            +F E ENVNDIQEDMLNDI DKAT+EPS+SM NV+GTSMASES A EKTSEE   NGSSQS KAEITEEQRARMEANRLKAL++RA +
Sbjct:  206 LFAEFENVNDIQEDMLNDIYDKATEEPSQSMHNVIGTSMASESNATEKTSEE---NGSSQSGKAEITEEQRARMEANRLKALERRAEI 290
[Close]
BLAST of Cc_v2.0_23291.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S2YJG3|A0A1S2YJG3_CICAR (TIMELESS-interacting protein OS=Cicer arietinum OX=3827 GN=LOC101496991 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.567e-34
Identity = 65/95 (68.42%), Postives = 75/95 (78.95%), Query Frame = 0 
Query:    1 MFTESENVNDIQEDMLNDICDKATQEPSESMDNVVGTSMASESMAIEKTSEEVQNNGSSQSVKAEITEEQRARMEANRLKALQKRAALAGFSQAS 95
            +F E ENVNDIQEDM NDI +KAT+EPSE M NV+  S    S AIEKTS EV N+G+S S+KAEIT EQRARMEANRLKAL++RAA A  SQ+S
Sbjct:  189 LFPEPENVNDIQEDMFNDIFNKATEEPSEPMQNVISASTDPISSAIEKTSNEVPNSGASLSIKAEITAEQRARMEANRLKALERRAARANISQSS 283
[Close]
BLAST of Cc_v2.0_23291.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86V5N4|A0AA86V5N4_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS6591 PE=4 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.368e-33
Identity = 63/82 (76.83%), Postives = 69/82 (84.15%), Query Frame = 0 
Query:    1 MFTESENVNDIQEDMLNDICDKATQEPSESMDNVVGTSMASESMAIEKTSEEVQNNGSSQSVKAEITEEQRARMEANRLKAL 82
            +F +SE V D QEDMLNDI DKAT+EPS+SMDNV+GTS AS S  IEK +EEV NNGSS S KAEITEEQRARMEANRLKAL
Sbjct:  194 VFPDSEFVTDTQEDMLNDIYDKATEEPSQSMDNVIGTSTASTSNLIEKIAEEVHNNGSSDSGKAEITEEQRARMEANRLKAL 275
[Close]
BLAST of Cc_v2.0_23291.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9V851|A0A0L9V851_PHAAN (CCHC-type domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0137150 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.793e-33
Identity = 60/82 (73.17%), Postives = 73/82 (89.02%), Query Frame = 0 
Query:    1 MFTESENVNDIQEDMLNDICDKATQEPSESMDNVVGTSMASESMAIEKTSEEVQNNGSSQSVKAEITEEQRARMEANRLKAL 82
            +F +S NV DIQE+MLNDI D+AT++PS+S DNV+GTSMASES + E+T+E+VQNNG+ QS KAEITEEQRARMEANRLKAL
Sbjct:  192 VFADSVNVTDIQEEMLNDIYDRATEQPSQSTDNVIGTSMASESNSTERTAEKVQNNGTGQSGKAEITEEQRARMEANRLKAL 273
[Close]
BLAST of Cc_v2.0_23291.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3SE64|A0A0S3SE64_PHAAN (CCHC-type domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.06G242400 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.398e-33
Identity = 60/82 (73.17%), Postives = 73/82 (89.02%), Query Frame = 0 
Query:    1 MFTESENVNDIQEDMLNDICDKATQEPSESMDNVVGTSMASESMAIEKTSEEVQNNGSSQSVKAEITEEQRARMEANRLKAL 82
            +F +S NV DIQE+MLNDI D+AT++PS+S DNV+GTSMASES + E+T+E+VQNNG+ QS KAEITEEQRARMEANRLKAL
Sbjct:  193 VFADSVNVTDIQEEMLNDIYDRATEQPSQSTDNVIGTSMASESNSTERTAEKVQNNGTGQSGKAEITEEQRARMEANRLKAL 274
[Close]
BLAST of Cc_v2.0_23291.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2K3PFA0|A0A2K3PFA0_TRIPR (TIMELESS-interacting protein OS=Trifolium pratense OX=57577 GN=L195_g010649 PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.148e-32
Identity = 62/95 (65.26%), Postives = 73/95 (76.84%), Query Frame = 0 
Query:    1 MFTESENVNDIQEDMLNDICDKATQEPSESMDNVVGTSMASESMAIEKTSEEVQNNGSSQSVKAEITEEQRARMEANRLKALQKRAALAGFSQAS 95
            +F E  NVNDIQEDMLNDI DKAT+EPS+ M NV+  S   +S A+EKTS EV N+G+S S  A IT EQRARMEANRLKAL++RAA A  SQ+S
Sbjct:   50 VFAEPGNVNDIQEDMLNDIFDKATEEPSQPMQNVISASTDPKSSAVEKTSNEVPNSGASLSSNAGITAEQRARMEANRLKALERRAARASISQSS 144
The following BLAST results are available for this feature:
BLAST of Cc_v2.0_23291.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A371HBU1|A0A371HBU1_MUCPR1.668e-4281.05TIMELESS-interacting protein OS=Mucuna pruriens OX... [more]
tr|V7ADN0|V7ADN0_PHAVU4.138e-4176.84CCHC-type domain-containing protein OS=Phaseolus v... [more]
tr|A0A0B2RGC5|A0A0B2RGC5_GLYSO7.301e-3781.40TIMELESS-interacting protein OS=Glycine soja OX=38... [more]
tr|A0A445HZB1|A0A445HZB1_GLYSO1.358e-3679.55TIMELESS-interacting protein OS=Glycine soja OX=38... [more]
tr|I1LIR6|I1LIR6_SOYBN1.358e-3679.55CCHC-type domain-containing protein OS=Glycine max... [more]
tr|A0A1S2YJG3|A0A1S2YJG3_CICAR2.567e-3468.42TIMELESS-interacting protein OS=Cicer arietinum OX... [more]
tr|A0AA86V5N4|A0AA86V5N4_9FABA3.368e-3376.83Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|A0A0L9V851|A0A0L9V851_PHAAN4.793e-3373.17CCHC-type domain-containing protein OS=Phaseolus a... [more]
tr|A0A0S3SE64|A0A0S3SE64_PHAAN5.398e-3373.17CCHC-type domain-containing protein OS=Vigna angul... [more]
tr|A0A2K3PFA0|A0A2K3PFA0_TRIPR1.148e-3265.26TIMELESS-interacting protein OS=Trifolium pratense... [more]
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BLAST of Cc_v2.0_23291.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot )
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cc_v2.0_23291.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>drCajCajn.Asha.2.0.Cc_v2.0_23291.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_23291.1; Name=Cc_v2.0_23291.1; organism=Cajanus cajan; type=mRNA; length=294bp
ATGTTTACTGAATCTGAAAATGTCAATGACATTCAGGAAGACATGCTTAA
TGATATTTGTGATAAAGCTACTCAAGAACCTTCTGAGTCGATGGACAATG
TGGTTGGCACTAGTATGGCTTCAGAAAGTATGGCAATTGAAAAGACATCA
GAGGAAGTCCAAAATAATGGATCCAGCCAATCTGTCAAAGCTGAGATAAC
AGAAGAGCAGAGAGCTCGTATGGAAGCAAATCGGTTGAAGGCACTACAAA
AGCGTGCTGCTCTAGCCGGCTTTTCGCAGGCCTCCCAAATTTGA
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protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_23291.1

>drCajCajn.Asha.2.0.Cc_v2.0_23291.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_23291.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_23291.1; organism=Cajanus cajan; type=polypeptide; length=97bp
MFTESENVNDIQEDMLNDICDKATQEPSESMDNVVGTSMASESMAIEKTS
EEVQNNGSSQSVKAEITEEQRARMEANRLKALQKRAALAGFSQASQI
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mRNA from alignment at CcLG10_v2.0:1743891..1744882-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>drCajCajn.Asha.2.0.Cc_v2.0_23291.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_23291.1; Name=Cc_v2.0_23291.1; organism=Cajanus cajan; type=mRNA; length=992bp; location=Sequence derived from: CcLG10_v2.0:1743891..1744882- (Cajanus cajan
ATGTTTACTGAATCTGAAAATGTCAATGACATTCAGGAAGACATGCTTAA
TGATATTTGTGATAAAGCTACTCAAGTAAGTTTAATTTACTTCAAATAAA
AGTCATTTATCATTATGTAATATGTTTTATGTAATTGTGAAAGCACTATC
AATATTTATCTAAATCAATCAATCAGGACGAAATATGTAAAATTATCTTT
TAAGGATACTGATTCTCACAGATTTGTTAGTAATTTACATTATCCGGGAA
AAAAGGTTAAGCCTAGTTCAGTCATCCTTATCTAGTGGCATGCAGGAGTA
AAAAAATAATAGAAAAAGGAAAAAAGTAAGATTGATGTAAGAATGCAATA
GTAGTTGGGGTGGGTAAAATGAACTGAACCGAACTAAATTTATAAAAATT
ATACTGAACTTAAAAATAGTTCTCATAAATTGAACTAAACTGAATATTAG
TTCAAACGAATTGAATTGAACTGTTCTTTTGTATCATTGAATTAAACTGT
TCTCTCTCAGTAATTTAAACAGAGATCACTCAAACATCTGTTGTATATGC
ATTTTATCTTTCCTTCTCAAGTCTATGGTTTATTCATACTTAAGCCTCTG
TATGAAGGCAGATACCATTATCTCTAAGAACTTTGTAAATTTAATAAAAT
AGTTGCAAGTAGCTTGTTAATGTTATTCGTAGCTTTTCAATTAAACCAAA
TTGTGAGAGAAATGGTAAACAAGGAACTTATGTCAAAGCATAACGACAGT
AGTACCTTCCCCTTTTATTACAGGAACCTTCTGAGTCGATGGACAATGTG
GTTGGCACTAGTATGGCTTCAGAAAGTATGGCAATTGAAAAGACATCAGA
GGAAGTCCAAAATAATGGATCCAGCCAATCTGTCAAAGCTGAGATAACAG
AAGAGCAGAGAGCTCGTATGGAAGCAAATCGGTTGAAGGCACTACAAAAG
CGTGCTGCTCTAGCCGGCTTTTCGCAGGCCTCCCAAATTTGA
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Coding sequence (CDS) from alignment at CcLG10_v2.0:1743891..1744882-

>drCajCajn.Asha.2.0.Cc_v2.0_23291.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_23291.1; Name=Cc_v2.0_23291.1; organism=Cajanus cajan; type=CDS; length=294bp; location=Sequence derived from: CcLG10_v2.0:1743891..1744882- (Cajanus cajan
ATGTTTACTGAATCTGAAAATGTCAATGACATTCAGGAAGACATGCTTAA
TGATATTTGTGATAAAGCTACTCAAGAACCTTCTGAGTCGATGGACAATG
TGGTTGGCACTAGTATGGCTTCAGAAAGTATGGCAATTGAAAAGACATCA
GAGGAAGTCCAAAATAATGGATCCAGCCAATCTGTCAAAGCTGAGATAAC
AGAAGAGCAGAGAGCTCGTATGGAAGCAAATCGGTTGAAGGCACTACAAA
AGCGTGCTGCTCTAGCCGGCTTTTCGCAGGCCTCCCAAATTTGA
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