Cc_v2.0_27928.1

Transcript Overview
NameCc_v2.0_27928.1
Unique NamedrCajCajn.Asha.2.0.Cc_v2.0_27928.1
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length276
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CcLG11_v2.0chromosomeCcLG11_v2.0:55012047..55012843 -Cajanus cajan cv. Asha genome v2.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anccaL0026Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL111Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0201Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL221Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0388Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL321Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccaL432Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0639Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL508Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0795Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carccaL015Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccapsR137Pisum sativum Cameor genome v1aPisum sativum
ccapsR152Pisum sativum Cameor genome v1aPisum sativum
ccapsR154Pisum sativum Cameor genome v1aPisum sativum
ccapsR161Pisum sativum Cameor genome v1aPisum sativum
ccapsR206Pisum sativum Cameor genome v1aPisum sativum
carccaL162Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
carccaL164Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
carccaL235Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccavrvR149Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccapvR154Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavrvR155Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavrvR171Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavfhR130Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR177Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavfhR169Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR206Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccapvR224Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavfhR188Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR235Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavssR131Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavssR185Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavssR194Vicia sativa cv. Studenica genome v1.0Vicia sativa
carccaL554Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccavuR110Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR138Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR127Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR158Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavumR196Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR165Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR215Vigna umbellata FF25 genome v1.0Vigna umbellata
ccccaL0557Cajanus cajan Asha genome v1.0Cajanus cajan
ccccaL0751Cajanus cajan Asha genome v1.0Cajanus cajan
ccccaL0933Cajanus cajan Asha genome v1.0Cajanus cajan
ccapvfR153Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccavunR118Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR180Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccavunR147Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR215Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR222Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR237Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vum_01G03932.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_014643694.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
PvulFLAVERTChr09.1553Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigun09g013000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Psat4g026680.1Pisum sativum Cameor genome v1aPisum sativum
jg19934.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun03g421400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun03g421400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va01G097940.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
PvulFLAVERTChr03.1000575Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.009G249500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
evm.Ca_v2.0_19961Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
Vum_02G02559.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Phvul.003G096700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_014652677.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun09g013000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Hedin2.R1.4g192920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-KK1_004399Cajanus cajan Asha genome v1.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cc_v2.0_27928drCajCajn.Asha.2.0.Cc_v2.0_27928Cajanus cajangene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_27928.1.exon2drCajCajn.Asha.2.0.Cc_v2.0_27928.1.exon2Cajanus cajanexon
Cc_v2.0_27928.1.exon1drCajCajn.Asha.2.0.Cc_v2.0_27928.1.exon1Cajanus cajanexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_27928.1.utr3p1drCajCajn.Asha.2.0.Cc_v2.0_27928.1.utr3p1Cajanus cajanthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.Cc_v2.0_27928.1drCajCajn.Asha.2.0.cds.Cc_v2.0_27928.1Cajanus cajanCDS
cds.Cc_v2.0_27928.1drCajCajn.Asha.2.0.cds.Cc_v2.0_27928.1_2Cajanus cajanCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_27928.1.utr5p1drCajCajn.Asha.2.0.Cc_v2.0_27928.1.utr5p1Cajanus cajanfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drCajCajn.Asha.2.0.Cc_v2.0_27928.1drCajCajn.Asha.2.0.Cc_v2.0_27928.1Cajanus cajanpolypeptide
drCajCajn.Asha.2.0.Cc_v2.0_27928.1drCajCajn.Asha.2.0.Cc_v2.0_27928.1-proteinCajanus cajanpolypeptide


Homology
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151STM0|A0A151STM0_CAJCA (Late embryogenesis abundant protein Lea5 OS=Cajanus cajan OX=3821 GN=KK1_004399 PE=4 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 7.198e-45
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 
Query:   21 RRGYAVASDVPLRVGLGNIEDKPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKLRLTH 91
            RRGYAVASDVPLRVGLGNIEDKPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKLRLTH
Sbjct:    3 RRGYAVASDVPLRVGLGNIEDKPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKLRLTH 73
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A371F213|A0A371F213_MUCPR (Late embryogenesis abundant protein Lea5 (Fragment) OS=Mucuna pruriens OX=157652 GN=LEA5 PE=4 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.447e-34
Identity = 63/88 (71.59%), Postives = 69/88 (78.41%), Query Frame = 0 
Query:   11 LSLLAQSISL----RRGYAVASDVPLRVGL---GNIEDKPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKLRLTH 91
            ++ LAQSISL    RRGY VASDV +RVGL   G IE+KPV RD SEAYS WAPDP+TGYYRPINHT EIDPV+LR MLLNHK R  H
Sbjct:    1 MARLAQSISLFPLHRRGYVVASDVSVRVGLRNIGRIEEKPVTRDDSEAYSIWAPDPITGYYRPINHTPEIDPVELRQMLLNHKFRSPH 88
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8JNN8|A0A8B8JNN8_ABRPR (Late embryogenesis abundant protein Lea5-like OS=Abrus precatorius OX=3816 GN=LOC113847975 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.366e-33
Identity = 68/99 (68.69%), Postives = 74/99 (74.75%), Query Frame = 0 
Query:    1 MSRSLSLPRRLSLL-AQSIS----LRRGYAVASDVPLRVGLGNI------EDKPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKLR 88
            M+ SLS  +R+ LL AQSIS     RRGYA ASDV LRVGLGNI      E+KPV RD SEAYSAWAPDPVTG+YRPINHT EIDPV+LR MLL H  R
Sbjct:    1 MAHSLSQAKRVGLLVAQSISPISLHRRGYAAASDVSLRVGLGNIARRSGMEEKPVARDRSEAYSAWAPDPVTGFYRPINHTPEIDPVELRQMLLKHPPR 99
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy TrEMBL (2024)
Match: tr|K4JRE6|K4JRE6_VIGUN (LEA5-2.1 OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g312 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.697e-31
Identity = 67/104 (64.42%), Postives = 74/104 (71.15%), Query Frame = 0 
Query:    1 MSRSLSLPRRLSLL-AQSISL----RRGYAVASDVPLRVGLGN-----------IEDKPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKLR 88
            MS SLS  + L LL  QSISL    RRGYAVASDV +RVGLGN            E+KPV RDG++AYS WAPDPVTG YRPINHT EIDPV+LR MLLNHK +
Sbjct:    1 MSPSLSQAKSLRLLLPQSISLIPVHRRGYAVASDVSVRVGLGNNVGRRSGIVGGAEEKPVTRDGAKAYSDWAPDPVTGDYRPINHTPEIDPVELRRMLLNHKFK 104
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy TrEMBL (2024)
Match: tr|K4JBZ5|K4JBZ5_VIGUN (LEA5-1 OS=Vigna unguiculata OX=3917 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.808e-31
Identity = 66/104 (63.46%), Postives = 74/104 (71.15%), Query Frame = 0 
Query:    1 MSRSLSLPRRLSLL-AQSISL----RRGYAVASDVPLRVGLGN-----------IEDKPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKLR 88
            MS SLS  + L LL  QSISL    RRGYAVASDV +RVGLGN            E+KPV RDG++AYS WAPDP+TG YRPINHT EIDPV+LR MLLNHK +
Sbjct:    1 MSPSLSQAKSLRLLLPQSISLIPVHRRGYAVASDVSVRVGLGNNVGRRSGIVGGAEEKPVTRDGAKAYSDWAPDPITGDYRPINHTPEIDPVELRRMLLNHKFK 104
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3R8T9|A0A0S3R8T9_PHAAN (Late embryogenesis abundant protein Lea5 OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G521200 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 6.439e-30
Identity = 66/103 (64.08%), Postives = 72/103 (69.90%), Query Frame = 0 
Query:    1 MSRSLSLPRRLSLL-AQSISL----RRGYAVASDVPLRVGLGN-----------IEDKPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKL 87
            MS SLS  + L LL  QSISL    RRGYAVASDV  RVGLGN            E+KP+ RDG++AYS WAPDPVTG YRPINHT EIDPV+LR MLLNHK 
Sbjct:    1 MSPSLSQAKSLRLLLPQSISLFPFHRRGYAVASDVLARVGLGNNIGRRSGIVGGAEEKPMTRDGAKAYSDWAPDPVTGDYRPINHTPEIDPVELRRMLLNHKF 103
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9TSN0|A0A0L9TSN0_PHAAN (Late embryogenesis abundant protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0020620 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 6.439e-30
Identity = 66/103 (64.08%), Postives = 72/103 (69.90%), Query Frame = 0 
Query:    1 MSRSLSLPRRLSLL-AQSISL----RRGYAVASDVPLRVGLGN-----------IEDKPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKL 87
            MS SLS  + L LL  QSISL    RRGYAVASDV  RVGLGN            E+KP+ RDG++AYS WAPDPVTG YRPINHT EIDPV+LR MLLNHK 
Sbjct:    1 MSPSLSQAKSLRLLLPQSISLFPFHRRGYAVASDVLARVGLGNNIGRRSGIVGGAEEKPMTRDGAKAYSDWAPDPVTGDYRPINHTPEIDPVELRRMLLNHKF 103
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445G0Y5|A0A445G0Y5_GLYSO (Late embryogenesis abundant protein Lea5 OS=Glycine soja OX=3848 GN=D0Y65_044695 PE=4 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.749e-29
Identity = 65/99 (65.66%), Postives = 74/99 (74.75%), Query Frame = 0 
Query:    1 MSRSLSLPRRLSLL-AQSISL----RRGYAVASDVPLRVGLGNI----------EDKPVKRDGSEAYSA-WAPDPVTGYYRPINHTLEIDPVDLRNMLL 83
            M+RSLS  +R+ +L AQSISL    RRGYAVASDV +RVGLGNI          E+KP  RDGS+AYS  WAPDPVTGYYRPINHT EIDPV+LR+ LL
Sbjct:    1 MARSLSQAKRIGVLVAQSISLIPVHRRGYAVASDVSVRVGLGNIGRRNGIVGGVEEKPDTRDGSKAYSTDWAPDPVTGYYRPINHTPEIDPVELRHRLL 99
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy TrEMBL (2024)
Match: tr|O24422|O24422_SOYBN (Desiccation protective protein LEA5 OS=Glycine max OX=3847 GN=Lea5 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.749e-29
Identity = 65/99 (65.66%), Postives = 74/99 (74.75%), Query Frame = 0 
Query:    1 MSRSLSLPRRLSLL-AQSISL----RRGYAVASDVPLRVGLGNI----------EDKPVKRDGSEAYSA-WAPDPVTGYYRPINHTLEIDPVDLRNMLL 83
            M+RSLS  +R+ +L AQSISL    RRGYAVASDV +RVGLGNI          E+KP  RDGS+AYS  WAPDPVTGYYRPINHT EIDPV+LR+ LL
Sbjct:    1 MARSLSQAKRIGVLVAQSISLIPVHRRGYAVASDVSVRVGLGNIGRRNGIVGGVEEKPDTRDGSKAYSTDWAPDPVTGYYRPINHTPEIDPVELRHRLL 99
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7CBB7|V7CBB7_PHAVU (Late embryogenesis abundant protein Lea5 OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G096700g PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.566e-29
Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 0 
Query:    1 MSRSLSLPRRLSLLAQSISL----RRGYAVASDVPLRVGLGN-----------IEDKPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKLR 88
            MSRSLS  +   L+A+SISL    RRGYAVASDV +R+GLGN            E+K V RDG++AYS WAPDPVTG YRP+NHT  IDPV+LR MLLNHK +
Sbjct:    1 MSRSLS--QLCVLVAESISLIPVHRRGYAVASDVSVRLGLGNNIGRRSGIVGGAEEKAVTRDGAKAYSDWAPDPVTGDYRPMNHTPGIDPVELRQMLLNHKFK 101
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q39644|LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis OX=2711 GN=LEA5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.636e-20
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 0 
Query:    1 MSRSLSLPRRL-SLLAQSISL---RRGYAVASDVPL----RVGLGNIED-KPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKLR 88
            M+RSL   + L + +A  ISL   RRGYA A+  PL    R G+    D +P  R+ S A SAWAPDP+TGYYRP N  +EIDP +LR MLLNHK+R
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAA--PLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVR 95
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q39084|LEA41_ARATH (Late embryogenis abundant protein 41 OS=Arabidopsis thaliana OX=3702 GN=LEA41 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.791e-15
Identity = 37/85 (43.53%), Postives = 47/85 (55.29%), Query Frame = 0 
Query:   14 LAQSISLRRGYAVASD----------VPLRVGLGNIEDKPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKLR 88
            L+ SI LRR Y   S              RV +G +E + + +   EA SAW PDPVTGYYRP N   EIDP +LR +LL +K +
Sbjct:   21 LSCSIVLRRSYVATSQNVTAAGLSKGGSTRVMVGKMEQRGLDQ---EAESAWGPDPVTGYYRPSNRAAEIDPAELRELLLKNKAK 102
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P46521|LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum OX=3635 GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.017e-14
Identity = 46/104 (44.23%), Postives = 58/104 (55.77%), Query Frame = 0 
Query:    1 MSRSLSLPRRLSL-----LAQSISLRRGY------AVASDVPLRVGLGNIEDKPVKRDGSE----AYS-AWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKLR 88
            M+RS+S  + L       L  SIS RRGY      AV +       +G +E +   ++ S     AYS AWAPDPVTGYYRP N   EID  DLR M+LNH++R
Sbjct:    1 MARSVSSFKFLGASVFDALYVSIS-RRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVR 103
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P46522|LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum OX=3635 GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.177e-14
Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 0 
Query:   21 RRGY------AVASDVPLRVGLGNIEDKPVKRDGSE----AYS-AWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKLR 88
            RRGY      AV +       +G +E +   ++ S     AYS AWAPDPVTGYYRP N   EID  +LR MLLNH++R
Sbjct:   25 RRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVR 103
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9SRX6|LEA2_ARATH (Late embryogenis abundant protein 2 OS=Arabidopsis thaliana OX=3702 GN=LEA2 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.577e-13
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 0 
Query:    1 MSRSLSLPRRLSLL-AQSIS---LRRGYAVASDVPLRVGLGNIEDKPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHK 86
            M+RSL+  +  S+  ++ +S    RRG+A A+   L   +   E K    + S   + W PDP TGYYRP   + EIDP +LR +LLN+K
Sbjct:    1 MARSLANAKIQSVFGSEKLSNAVFRRGFAAAAKTALDGSVSTAEMKKRAGEASSEKAPWVPDPKTGYYRPETVSEEIDPAELRAILLNNK 90
[Close]
BLAST of Cc_v2.0_27928.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q93WF6|SAG21_ARATH (Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SAG21 PE=2 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 4.771e-8
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 0 
Query:    1 MSRSLSLPRRLS-LLAQSIS---LRRGYAVAS---DVPLRVGLGNIEDKPVKRDGSEAYS---AWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHK 86
            M+RS+S  + +S  +++ +S    RRGYA  +    V      G +    +K+ G E  +   +W PDP TGYYRP   + EID  +LR  LLN+K
Sbjct:    1 MARSISNVKIVSAFVSRELSNAIFRRGYAATAAQGSVSSGGRSGAVASAVMKKKGVEESTQKISWVPDPKTGYYRPETGSNEIDAAELRAALLNNK 96
[Close]
BLAST of Cc_v2.0_27928.1 vs. Araport11
Match: | (Symbols: DI21, ATDI21 | drought-induced 21 | chr4:9028657-9029269 FORWARD LENGTH=104)

HSP 1 Score: 67.3958 bits (163), Expect = 4.963e-16
Identity = 37/85 (43.53%), Postives = 47/85 (55.29%), Query Frame = 0 
Query:   14 LAQSISLRRGYAVASD----------VPLRVGLGNIEDKPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKLR 88
            L+ SI LRR Y   S              RV +G +E + + +   EA SAW PDPVTGYYRP N   EIDP +LR +LL +K +
Sbjct:   21 LSCSIVLRRSYVATSQNVTAAGLSKGGSTRVMVGKMEQRGLDQ---EAESAWGPDPVTGYYRPSNRAAEIDPAELRELLLKNKAK 102
[Close]
BLAST of Cc_v2.0_27928.1 vs. Araport11
Match: | (Symbols: LEA2, LEA3, AtLEA3 | late embryogenesis abundant 3, late embryogenesis abundant 38 | chr1:623933-624304 REVERSE LENGTH=91)

HSP 1 Score: 62.3882 bits (150), Expect = 3.705e-14
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 0 
Query:    1 MSRSLSLPRRLSLL-AQSIS---LRRGYAVASDVPLRVGLGNIEDKPVKRDGSEAYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHK 86
            M+RSL+  +  S+  ++ +S    RRG+A A+   L   +   E K    + S   + W PDP TGYYRP   + EIDP +LR +LLN+K
Sbjct:    1 MARSLANAKIQSVFGSEKLSNAVFRRGFAAAAKTALDGSVSTAEMKKRAGEASSEKAPWVPDPKTGYYRPETVSEEIDPAELRAILLNNK 90
[Close]
BLAST of Cc_v2.0_27928.1 vs. Araport11
Match: | (Symbols: SAG21, AtLEA5, LEA38 | senescence-associated gene 21, Arabidopsis thaliana late embryogenensis abundant like 5, late embryogenesis abundant 38 | chr4:1046414-1046807 REVERSE LENGTH=97)

HSP 1 Score: 49.2914 bits (116), Expect = 4.926e-9
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 0 
Query:    1 MSRSLSLPRRLS-LLAQSIS---LRRGYAVAS---DVPLRVGLGNIEDKPVKRDGSEAYS---AWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHK 86
            M+RS+S  + +S  +++ +S    RRGYA  +    V      G +    +K+ G E  +   +W PDP TGYYRP   + EID  +LR  LLN+K
Sbjct:    1 MARSISNVKIVSAFVSRELSNAIFRRGYAATAAQGSVSSGGRSGAVASAVMKKKGVEESTQKISWVPDPKTGYYRPETGSNEIDAAELRAALLNNK 96
[Close]
BLAST of Cc_v2.0_27928.1 vs. Araport11
Match: | (Symbols: SAG21, AtLEA5, LEA38 | senescence-associated gene 21, Arabidopsis thaliana late embryogenensis abundant like 5, late embryogenesis abundant 38 | chr4:1046414-1046746 REVERSE LENGTH=78)

HSP 1 Score: 46.9802 bits (110), Expect = 2.887e-8
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 0 
Query:   44 VKRDGSEAYS---AWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHK 86
            +K+ G E  +   +W PDP TGYYRP   + EID  +LR  LLN+K
Sbjct:   32 MKKKGVEESTQKISWVPDPKTGYYRPETGSNEIDAAELRAALLNNK 77
[Close]
BLAST of Cc_v2.0_27928.1 vs. Araport11
Match: | (Symbols: SAG21, AtLEA5, LEA38 | senescence-associated gene 21, Arabidopsis thaliana late embryogenensis abundant like 5, late embryogenesis abundant 38 | chr4:1046414-1047092 REVERSE LENGTH=192)

HSP 1 Score: 48.521 bits (114), Expect = 4.353e-8
Identity = 29/73 (39.73%), Postives = 38/73 (52.05%), Query Frame = 0 
Query:   20 LRRGYAVAS---DVPLRVGLGNIEDKPVKRDGSEAYS---AWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHK 86
             RRGYA  +    V      G +    +K+ G E  +   +W PDP TGYYRP   + EID  +LR  LLN+K
Sbjct:  119 FRRGYAATAAQGSVSSGGRSGAVASAVMKKKGVEESTQKISWVPDPKTGYYRPETGSNEIDAAELRAALLNNK 191
The following BLAST results are available for this feature:
BLAST of Cc_v2.0_27928.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A151STM0|A0A151STM0_CAJCA7.198e-45100.00Late embryogenesis abundant protein Lea5 OS=Cajanu... [more]
tr|A0A371F213|A0A371F213_MUCPR5.447e-3471.59Late embryogenesis abundant protein Lea5 (Fragment... [more]
tr|A0A8B8JNN8|A0A8B8JNN8_ABRPR1.366e-3368.69Late embryogenesis abundant protein Lea5-like OS=A... [more]
tr|K4JRE6|K4JRE6_VIGUN1.697e-3164.42LEA5-2.1 OS=Vigna unguiculata OX=3917 GN=DEO72_LG2... [more]
tr|K4JBZ5|K4JBZ5_VIGUN2.808e-3163.46LEA5-1 OS=Vigna unguiculata OX=3917 PE=2 SV=1[more]
tr|A0A0S3R8T9|A0A0S3R8T9_PHAAN6.439e-3064.08Late embryogenesis abundant protein Lea5 OS=Vigna ... [more]
tr|A0A0L9TSN0|A0A0L9TSN0_PHAAN6.439e-3064.08Late embryogenesis abundant protein OS=Phaseolus a... [more]
tr|A0A445G0Y5|A0A445G0Y5_GLYSO3.749e-2965.66Late embryogenesis abundant protein Lea5 OS=Glycin... [more]
tr|O24422|O24422_SOYBN3.749e-2965.66Desiccation protective protein LEA5 OS=Glycine max... [more]
tr|V7CBB7|V7CBB7_PHAVU6.566e-2960.19Late embryogenesis abundant protein Lea5 OS=Phaseo... [more]
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BLAST of Cc_v2.0_27928.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot )
Total hits: 6
Match NameE-valueIdentityDescription
sp|Q39644|LEA5_CITSI1.636e-2052.58Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
sp|Q39084|LEA41_ARATH4.791e-1543.53Late embryogenis abundant protein 41 OS=Arabidopsi... [more]
sp|P46521|LEA5A_GOSHI1.017e-1444.23Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
sp|P46522|LEA5D_GOSHI2.177e-1446.84Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
sp|Q9SRX6|LEA2_ARATH3.577e-1338.89Late embryogenis abundant protein 2 OS=Arabidopsis... [more]
sp|Q93WF6|SAG21_ARATH4.771e-836.46Protein SENESCENCE-ASSOCIATED GENE 21, mitochondri... [more]
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BLAST of Cc_v2.0_27928.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11)
Total hits: 5
Match NameE-valueIdentityDescription
|4.963e-1643.53Symbols: DI21, ATDI21 | drought-induced 21 | chr4:... [more]
|3.705e-1438.89Symbols: LEA2, LEA3, AtLEA3 | late embryogenesis a... [more]
|4.926e-936.46Symbols: SAG21, AtLEA5, LEA38 | senescence-associa... [more]
|2.887e-847.83Symbols: SAG21, AtLEA5, LEA38 | senescence-associa... [more]
|4.353e-839.73Symbols: SAG21, AtLEA5, LEA38 | senescence-associa... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA_3a subgroupPFAMPF03242LEA_3acoord: 1..86
e-value: 9.0E-18
score: 75.9
IPR004926Late embryogenesis abundant protein, LEA_3a subgroupPANTHERPTHR33509LATE EMBRYOGENIS ABUNDANT PROTEIN 2-RELATEDcoord: 1..87

Sequences
The following sequences are available for this feature:

mRNA sequence

>drCajCajn.Asha.2.0.Cc_v2.0_27928.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_27928.1; Name=Cc_v2.0_27928.1; organism=Cajanus cajan; type=mRNA; length=276bp
ATGTCACGCTCTCTCTCGCTGCCCAGACGTCTTTCTCTGCTTGCTCAATC
TATCTCGCTTCGGCGAGGCTATGCTGTTGCGTCGGATGTTCCGCTAAGAG
TTGGATTGGGCAATATAGAAGACAAGCCCGTAAAAAGAGATGGTTCAGAA
GCCTACTCCGCTTGGGCCCCGGATCCAGTAACAGGCTACTACAGGCCCAT
TAATCACACCCTTGAAATCGACCCTGTGGATCTCCGCAACATGTTGCTCA
ACCACAAGCTCAGATTAACCCACTAG
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protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_27928.1

>drCajCajn.Asha.2.0.Cc_v2.0_27928.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_27928.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_27928.1; organism=Cajanus cajan; type=polypeptide; length=91bp
MSRSLSLPRRLSLLAQSISLRRGYAVASDVPLRVGLGNIEDKPVKRDGSE
AYSAWAPDPVTGYYRPINHTLEIDPVDLRNMLLNHKLRLTH
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mRNA from alignment at CcLG11_v2.0:55012047..55012843-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drCajCajn.Asha.2.0.Cc_v2.0_27928.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_27928.1; Name=Cc_v2.0_27928.1; organism=Cajanus cajan; type=mRNA; length=797bp; location=Sequence derived from: CcLG11_v2.0:55012047..55012843- (Cajanus cajan
AAAACCCAAGTGACGCCACGCACCCACACACTTAACTCTATCTTCTCAAA
TAGAACTATAAAAGACGACAGAAACCCTAAATGAGAGAGTGAGAGAGAAG
AAGAAGCAAGGGGTGGCTGCGAAAGCTTCTTCAAGTCCAAACACTTGATA
GTTTTCGCAGCAGCTCATATAACATAACATGTCACGCTCTCTCTCGCTGC
CCAGACGTCTTTCTCTGCTTGCTCAATCTATCTCGCTTCGGTCAGTTTCA
CTTTTCATACCTTATCACTTTGTTTGATGAATTGTAAATTTTAACGTTTC
CTCGTATGGGGTATGGATAGGCGAGGCTATGCTGTTGCGTCGGATGTTCC
GCTAAGAGTTGGATTGGGCAATATAGAAGACAAGCCCGTAAAAAGAGATG
GTTCAGAAGCCTACTCCGCTTGGGCCCCGGATCCAGTAACAGGCTACTAC
AGGCCCATTAATCACACCCTTGAAATCGACCCTGTGGATCTCCGCAACAT
GTTGCTCAACCACAAGCTCAGATTAACCCACTAGACCTAGCTATGCTATG
GCTGCTAGTGCTAACCTAAATAAAAGATAAACTAAATAAAGGCTTTTGTT
CAAGTATGTTATGTTAAATTATGTCCTATATATGTACCCTAAAATACTAC
CTTTAAGCTAAACACCGAGGACTATGTTTTCGTTTATTATATTTCTCTGC
ATCACAGCGCTATCTTTACTTTCAAATTTCAATCAATCTATCTAAACCAA
AGTATTATTATTAGACATAGCATATTAAATATTTAACTTAACTCGCT
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Coding sequence (CDS) from alignment at CcLG11_v2.0:55012047..55012843-

>drCajCajn.Asha.2.0.Cc_v2.0_27928.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_27928.1; Name=Cc_v2.0_27928.1; organism=Cajanus cajan; type=CDS; length=276bp; location=Sequence derived from: CcLG11_v2.0:55012047..55012843- (Cajanus cajan
ATGTCACGCTCTCTCTCGCTGCCCAGACGTCTTTCTCTGCTTGCTCAATC
TATCTCGCTTCGGCGAGGCTATGCTGTTGCGTCGGATGTTCCGCTAAGAG
TTGGATTGGGCAATATAGAAGACAAGCCCGTAAAAAGAGATGGTTCAGAA
GCCTACTCCGCTTGGGCCCCGGATCCAGTAACAGGCTACTACAGGCCCAT
TAATCACACCCTTGAAATCGACCCTGTGGATCTCCGCAACATGTTGCTCA
ACCACAAGCTCAGATTAACCCACTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR004926LEA_3a