Cc_v2.0_27940.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Cc_v2.0_27940.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151STC8|A0A151STC8_CAJCA (Protein RALF-like 33 OS=Cajanus cajan OX=3821 GN=KK1_004385 PE=3 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 4.764e-76 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query: 1 MRTRFGVFFFVCAILAVHVARSSSATLDFDSLFLPLKSGCRGSVAECSLLDEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
MRTRFGVFFFVCAILAVHVARSSSATLDFDSLFLPLKSGCRGSVAECSLLDEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR
Sbjct: 1 MRTRFGVFFFVCAILAVHVARSSSATLDFDSLFLPLKSGCRGSVAECSLLDEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
BLAST of Cc_v2.0_27940.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445G0W5|A0A445G0W5_GLYSO (Protein RALF-like 33 OS=Glycine soja OX=3848 GN=D0Y65_044686 PE=3 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.516e-61 Identity = 96/116 (82.76%), Postives = 102/116 (87.93%), Query Frame = 0
Query: 3 TRFGVFFFVCAILAVHVARSSSATLDFDSLFLPLKSGCRGSVAECSLL----DEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
T F FF VC IL+VHVA+SSS+TLD D+ FLPLKSGCRGSVAECSLL D EFLM+SE+NRRILAGR YISYGALRRNTVPCSRRGASYYNCRPGAQANPY RGCSAITRCRR
Sbjct: 5 TTFCAFFLVCTILSVHVAQSSSSTLDLDTFFLPLKSGCRGSVAECSLLAGDDDTEFLMESESNRRILAGRSYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCRR 120
BLAST of Cc_v2.0_27940.1 vs. ExPASy TrEMBL (2024)
Match: tr|K7MJM9|K7MJM9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100775931 PE=3 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.516e-61 Identity = 96/116 (82.76%), Postives = 102/116 (87.93%), Query Frame = 0
Query: 3 TRFGVFFFVCAILAVHVARSSSATLDFDSLFLPLKSGCRGSVAECSLL----DEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
T F FF VC IL+VHVA+SSS+TLD D+ FLPLKSGCRGSVAECSLL D EFLM+SE+NRRILAGR YISYGALRRNTVPCSRRGASYYNCRPGAQANPY RGCSAITRCRR
Sbjct: 5 TTFCAFFLVCTILSVHVAQSSSSTLDLDTFFLPLKSGCRGSVAECSLLAGDDDTEFLMESESNRRILAGRSYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCRR 120
BLAST of Cc_v2.0_27940.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445K192|A0A445K192_GLYSO (Protein RALF-like 33 OS=Glycine soja OX=3848 GN=D0Y65_018901 PE=3 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 1.830e-61 Identity = 96/115 (83.48%), Postives = 103/115 (89.57%), Query Frame = 0
Query: 3 TRFGVFFFVCAILAVHVARSSSATLDFDSLFLPLKSGCRGSVAECSLL---DEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
+ F FF +CAILAVHVA+SSS+TLD D+ FLPLKSGCRGSVAECSLL D EFLM+SE+NRRILAGR YISYGALRRNTVPCSRRGASYYNCRPGAQANPY RGCSAITRCRR
Sbjct: 4 STFCAFFLLCAILAVHVAQSSSSTLDLDAFFLPLKSGCRGSVAECSLLAGDDAEFLMESESNRRILAGRSYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCRR 118
BLAST of Cc_v2.0_27940.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1KMZ0|I1KMZ0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100780330 PE=3 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 1.830e-61 Identity = 96/115 (83.48%), Postives = 103/115 (89.57%), Query Frame = 0
Query: 3 TRFGVFFFVCAILAVHVARSSSATLDFDSLFLPLKSGCRGSVAECSLL---DEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
+ F FF +CAILAVHVA+SSS+TLD D+ FLPLKSGCRGSVAECSLL D EFLM+SE+NRRILAGR YISYGALRRNTVPCSRRGASYYNCRPGAQANPY RGCSAITRCRR
Sbjct: 4 STFCAFFLLCAILAVHVAQSSSSTLDLDAFFLPLKSGCRGSVAECSLLAGDDAEFLMESESNRRILAGRSYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCRR 118
BLAST of Cc_v2.0_27940.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8JMI5|A0A8B8JMI5_ABRPR (Protein RALF-like 33 OS=Abrus precatorius OX=3816 GN=LOC113847516 PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 3.916e-59 Identity = 98/124 (79.03%), Postives = 102/124 (82.26%), Query Frame = 0
Query: 2 RTRFGVFFFVCAILAVHVARSSSATLDFD------SLFLPLKSGCRGSVAECSLL-----DEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
RT F FF VCAILAVHVA SSSATLDF + PLKSGCRGS+AECSLL D EFLMDSE+NRRILA RRYISYGALR+NTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR
Sbjct: 7 RTSFSGFFLVCAILAVHVALSSSATLDFAGDLDLAAFLQPLKSGCRGSIAECSLLVGEDDDNEFLMDSESNRRILAARRYISYGALRKNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 130
BLAST of Cc_v2.0_27940.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S2YQ89|A0A1S2YQ89_CICAR (Protein RALF-like 33 OS=Cicer arietinum OX=3827 GN=LOC101497120 PE=3 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 2.888e-58 Identity = 96/123 (78.05%), Postives = 100/123 (81.30%), Query Frame = 0
Query: 2 RTRFGVFFFVCAILAVHVARSSSATLDF-----DSLFLPLKSGCRGSVAECSLL-----DEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
R+ FF VC ILAVHVA SSS+T DF S FLPL SGCRGS+AECSLL D EFLMDSE +RRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR
Sbjct: 5 RSSLSAFFLVCTILAVHVALSSSSTFDFTDNQLSSFFLPLDSGCRGSIAECSLLAGDEDDTEFLMDSENSRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 127
BLAST of Cc_v2.0_27940.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2K3NF36|A0A2K3NF36_TRIPR (Rapid alkalinization factor-like protein OS=Trifolium pratense OX=57577 GN=L195_g024948 PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 2.348e-57 Identity = 95/123 (77.24%), Postives = 102/123 (82.93%), Query Frame = 0
Query: 2 RTRFGVFFFVCAILAVHVARSSSATLDF-----DSLFLPLKSGCRGSVAECSLL-----DEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
R F VFF + AIL VHV+ +SS+TLDF + FLPL SGCRGS+AECSLL D EFLMDSE+NRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR
Sbjct: 4 RNTFYVFFLLFAILTVHVSFTSSSTLDFTDNQLSNFFLPLNSGCRGSIAECSLLAGDEDDTEFLMDSESNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 126
BLAST of Cc_v2.0_27940.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6KZX6|A0A4D6KZX6_VIGUN (Rapid ALkalinization Factor OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g302 PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 9.769e-57 Identity = 95/121 (78.51%), Postives = 99/121 (81.82%), Query Frame = 0
Query: 3 TRFGVFFFVCAILAVHVARSSSATLDF----DSLFLPLKSGCRGSVAECSLL-----DEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
T F VFF AILAVHVA+SS +TLDF + LPLKSGCRGSVAEC LL D EFLMDSET+RRILAGR YISYGALRRNTVPCSRRGASYYNCRPGAQANPY RGCSAITRCRR
Sbjct: 6 TFFSVFFLAFAILAVHVAQSSPSTLDFTGDLSTFLLPLKSGCRGSVAECGLLVGQDDDAEFLMDSETSRRILAGRTYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCRR 126
BLAST of Cc_v2.0_27940.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2Z6LUI0|A0A2Z6LUI0_TRISU (Rapid alkalinization factor OS=Trifolium subterraneum OX=3900 GN=TSUD_197850 PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 1.949e-56 Identity = 92/123 (74.80%), Postives = 102/123 (82.93%), Query Frame = 0
Query: 2 RTRFGVFFFVCAILAVHVARSSSATLDF-----DSLFLPLKSGCRGSVAECSLL-----DEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
+ F FF + AIL VHV+ +SS+TLDF + FLPL+SGCRGS+AECSLL D EF+MDSE+NRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR
Sbjct: 4 KNTFYAFFLLFAILTVHVSFTSSSTLDFTDNHLSNFFLPLESGCRGSIAECSLLAGEEDDSEFMMDSESNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 126
BLAST of Cc_v2.0_27940.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8L9P8|RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.685e-43 Identity = 74/110 (67.27%), Postives = 85/110 (77.27%), Query Frame = 0
Query: 10 FVCAILAVH---VARSSSATLDFDSLFLPLKSGCRGSVAECSL--LDEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
+ AIL VH A +S ++ DF +P++S C G++AECSL +EEF MDSE NRRILA +YISYGALRRNTVPCSRRGASYYNCR GAQANPY RGCSAITRCRR
Sbjct: 11 IIIAILTVHFLFAAVTSQSSGDF----VPIESKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 116
BLAST of Cc_v2.0_27940.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9LUS7|RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.936e-38 Identity = 77/127 (60.63%), Postives = 85/127 (66.93%), Query Frame = 0
Query: 7 VFFFVCAILAVH---VARSSSATLDFDSLFLPLKSGCRGSVAECS----LLDEEFLM------------DSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
F + ILAVH VA SS +T +F F P ++ CRG++AECS L D L DSE NRRILA RRYISYGALRRNT+PCSRRGASYYNCR GAQANPY RGCSAITRCRR
Sbjct: 12 AIFAILLILAVHNWSVAVSSQST-EFAGDFPPFETECRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137
BLAST of Cc_v2.0_27940.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q945T0|RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.583e-36 Identity = 66/111 (59.46%), Postives = 80/111 (72.07%), Query Frame = 0
Query: 5 FGVFFFVCAILAVHVARSSSATLDFDSLFLPLKSG--CRGSVAECSLLDEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCR 113
G FF A A S D+ +P +SG C+GS+ EC +EEF +DSE+NRRILA ++YISYGAL++N+VPCSRRGASYYNC+PGAQANPY RGCSAITRCR
Sbjct: 13 IGAFFISMA------AAGDSGAYDW---VMPARSGGGCKGSIGECIAEEEEFELDSESNRRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCR 114
BLAST of Cc_v2.0_27940.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9SRY3|RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.256e-32 Identity = 55/76 (72.37%), Postives = 62/76 (81.58%), Query Frame = 0
Query: 38 SGCRGSVAECSLLDEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCR 113
SGC GS+AEC +EE MDSE NRRILA +YISY +L+RN+VPCSRRGASYYNC+ GAQANPY RGCS I RCR
Sbjct: 45 SGCHGSIAECIGAEEE-EMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCR 119
BLAST of Cc_v2.0_27940.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9MA62|RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.410e-31 Identity = 69/114 (60.53%), Postives = 82/114 (71.93%), Query Frame = 0
Query: 8 FFFVCAILAVHVARSSSATLDF-DSLFL------PLKSGCRGSVAECSLLDEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
+ V AILA+ ++ S T DF DSL L SGC GS+AEC +EE DS+ +RRILA ++YISYGA+RRN+VPCSRRGASYYNC+ GAQANPY RGCS ITRCRR
Sbjct: 7 IYAVIAILAIVISAVES-TGDFGDSLDFVRAGSSSLFSGCTGSIAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119
BLAST of Cc_v2.0_27940.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6NME6|RLF19_ARATH (Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 6.804e-26 Identity = 57/97 (58.76%), Postives = 68/97 (70.10%), Query Frame = 0
Query: 19 VARSSSATLDFDSLFLPLKSGCRGSVAECSLLDEEFLMDSETNRRILAGRR-YISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
VA S++AT +L +G +G + E LD +LMDSETNRR LA RR YISYGALR+N VPCSRRG SYY+C+ +ANPYRRGCS IT C R
Sbjct: 17 VAESANATW---TLTKSCVNG-QGCIGEDGELD--YLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYR 107
BLAST of Cc_v2.0_27940.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9FZA0|RLF4_ARATH (Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.810e-25 Identity = 60/112 (53.57%), Postives = 71/112 (63.39%), Query Frame = 0
Query: 7 VFFFVCAILAVHVARSSSATLDFDSLFLPLKSGC---RGSVAECSLLDEEFLMDSETNRRILA-GRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
+ F ILA+ VA+S +AT PL C +G + E L E LMDSETNRR LA GRRYI Y AL++N VPCSRRG SYY+C+ + NPYRRGCSAIT C R
Sbjct: 6 LLIFGLLILAM-VAKSVNATY-------PLTKSCINGQGCIGEDDEL--ESLMDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYR 107
BLAST of Cc_v2.0_27940.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q2HIM9|RLF31_ARATH (Protein RALF-like 31 OS=Arabidopsis thaliana OX=3702 GN=RALFL31 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.549e-18 Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0
Query: 51 DEEFLMDSETNRRIL-AGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
++E LM +E +RR+L A +RYI Y LRR+ VPC + GASYY+CR G QAN Y RGC ITRC R
Sbjct: 43 EDEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYSRGCDTITRCAR 106
BLAST of Cc_v2.0_27940.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9LK37|RLF24_ARATH (Protein RALF-like 24 OS=Arabidopsis thaliana OX=3702 GN=RALFL24 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.138e-15 Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 0
Query: 58 SETNRRILAGRR-YISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
SE +RR++ R+ YISY LRR+ VPC + GASYY CR G QAN Y RGCS ITRC R
Sbjct: 55 SEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRCAR 111
BLAST of Cc_v2.0_27940.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|O23262|RLF32_ARATH (Protein RALF-like 32 OS=Arabidopsis thaliana OX=3702 GN=RALFL32 PE=3 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 3.560e-13 Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 0
Query: 7 VFFFVCAILAVHVARSSSATLDFDSLFLPLKSGCRGSVAECSLLDE----EFLMDSETNRRILAGRRY-ISYGALRRNTVPCS--RRGASY-YNCRPGAQANPYRRGCSAITRCRR 114
FF+C +LA +++SS++L C GSVAECS + E +M+S +++R+ + + +SYGALRRN C +RG SY C P +NPY RGCS RC R
Sbjct: 13 TIFFLCLLLAHVTSKASSSSL------------CNGSVAECSSMVETEEMSVIMESWSSQRLTEEQAHKLSYGALRRNQPACDGGKRGESYSTQCLP-PPSNPYSRGCSKHYRCGR 115
BLAST of Cc_v2.0_27940.1 vs. Araport11
Match: | (Symbols: RALF33, RALFL33 | ralf-like 33 | chr4:8984915-8985265 FORWARD LENGTH=116) HSP 1 Score: 140.969 bits (354), Expect = 1.755e-44 Identity = 74/110 (67.27%), Postives = 85/110 (77.27%), Query Frame = 0
Query: 10 FVCAILAVH---VARSSSATLDFDSLFLPLKSGCRGSVAECSL--LDEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
+ AIL VH A +S ++ DF +P++S C G++AECSL +EEF MDSE NRRILA +YISYGALRRNTVPCSRRGASYYNCR GAQANPY RGCSAITRCRR
Sbjct: 11 IIIAILTVHFLFAAVTSQSSGDF----VPIESKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 116
BLAST of Cc_v2.0_27940.1 vs. Araport11
Match: | (Symbols: RALF23, ATRALF23 | ARABIDOPSIS RAPID ALKALINIZATION FACTOR 23, rapid alkalinization factor 23 | chr3:5644748-5645164 FORWARD LENGTH=138) HSP 1 Score: 129.028 bits (323), Expect = 2.015e-39 Identity = 77/127 (60.63%), Postives = 85/127 (66.93%), Query Frame = 0
Query: 7 VFFFVCAILAVH---VARSSSATLDFDSLFLPLKSGCRGSVAECS----LLDEEFLM------------DSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
F + ILAVH VA SS +T +F F P ++ CRG++AECS L D L DSE NRRILA RRYISYGALRRNT+PCSRRGASYYNCR GAQANPY RGCSAITRCRR
Sbjct: 12 AIFAILLILAVHNWSVAVSSQST-EFAGDFPPFETECRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137
BLAST of Cc_v2.0_27940.1 vs. Araport11
Match: | (Symbols: RALF23, ATRALF23 | ARABIDOPSIS RAPID ALKALINIZATION FACTOR 23, rapid alkalinization factor 23 | chr3:5644748-5645164 FORWARD LENGTH=138) HSP 1 Score: 129.028 bits (323), Expect = 2.015e-39 Identity = 77/127 (60.63%), Postives = 85/127 (66.93%), Query Frame = 0
Query: 7 VFFFVCAILAVH---VARSSSATLDFDSLFLPLKSGCRGSVAECS----LLDEEFLM------------DSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
F + ILAVH VA SS +T +F F P ++ CRG++AECS L D L DSE NRRILA RRYISYGALRRNT+PCSRRGASYYNCR GAQANPY RGCSAITRCRR
Sbjct: 12 AIFAILLILAVHNWSVAVSSQST-EFAGDFPPFETECRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137
BLAST of Cc_v2.0_27940.1 vs. Araport11
Match: | (Symbols: RALF23, ATRALF23 | ARABIDOPSIS RAPID ALKALINIZATION FACTOR 23, rapid alkalinization factor 23 | chr3:5644748-5645164 FORWARD LENGTH=138) HSP 1 Score: 129.028 bits (323), Expect = 2.015e-39 Identity = 77/127 (60.63%), Postives = 85/127 (66.93%), Query Frame = 0
Query: 7 VFFFVCAILAVH---VARSSSATLDFDSLFLPLKSGCRGSVAECS----LLDEEFLM------------DSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
F + ILAVH VA SS +T +F F P ++ CRG++AECS L D L DSE NRRILA RRYISYGALRRNT+PCSRRGASYYNCR GAQANPY RGCSAITRCRR
Sbjct: 12 AIFAILLILAVHNWSVAVSSQST-EFAGDFPPFETECRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137
BLAST of Cc_v2.0_27940.1 vs. Araport11
Match: | (Symbols: RALF1, ATRALF1, RALFL1 | RAPID ALKALINIZATION FACTOR 1, RALF-LIKE 1, rapid alkalinization factor 1 | chr1:653976-654338 REVERSE LENGTH=120) HSP 1 Score: 113.62 bits (283), Expect = 1.307e-33 Identity = 55/76 (72.37%), Postives = 62/76 (81.58%), Query Frame = 0
Query: 38 SGCRGSVAECSLLDEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCR 113
SGC GS+AEC +EE MDSE NRRILA +YISY +L+RN+VPCSRRGASYYNC+ GAQANPY RGCS I RCR
Sbjct: 45 SGCHGSIAECIGAEEE-EMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCR 119
BLAST of Cc_v2.0_27940.1 vs. Araport11
Match: | (Symbols: RALFL22 | ralf-like 22 | chr3:1591381-1591740 FORWARD LENGTH=119) HSP 1 Score: 110.923 bits (276), Expect = 1.467e-32 Identity = 69/114 (60.53%), Postives = 82/114 (71.93%), Query Frame = 0
Query: 8 FFFVCAILAVHVARSSSATLDF-DSLFL------PLKSGCRGSVAECSLLDEEFLMDSETNRRILAGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
+ V AILA+ ++ S T DF DSL L SGC GS+AEC +EE DS+ +RRILA ++YISYGA+RRN+VPCSRRGASYYNC+ GAQANPY RGCS ITRCRR
Sbjct: 7 IYAVIAILAIVISAVES-TGDFGDSLDFVRAGSSSLFSGCTGSIAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119
BLAST of Cc_v2.0_27940.1 vs. Araport11
Match: | (Symbols: RALF19, RALFL19 | RAPID ALKALINIZATION FACTOR 19, ralf-like 19 | chr2:14288546-14288878 FORWARD LENGTH=110) HSP 1 Score: 96.2857 bits (238), Expect = 7.072e-27 Identity = 57/97 (58.76%), Postives = 68/97 (70.10%), Query Frame = 0
Query: 19 VARSSSATLDFDSLFLPLKSGCRGSVAECSLLDEEFLMDSETNRRILAGRR-YISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
VA S++AT +L +G +G + E LD +LMDSETNRR LA RR YISYGALR+N VPCSRRG SYY+C+ +ANPYRRGCS IT C R
Sbjct: 17 VAESANATW---TLTKSCVNG-QGCIGEDGELD--YLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYR 107
BLAST of Cc_v2.0_27940.1 vs. Araport11
Match: | (Symbols: AtRALF4, RALFL4, RALF4 | ralf-like 4, RAPID ALKALINIZATION FACTOR 4 | chr1:9883165-9883497 FORWARD LENGTH=110) HSP 1 Score: 94.7449 bits (234), Expect = 2.920e-26 Identity = 60/112 (53.57%), Postives = 71/112 (63.39%), Query Frame = 0
Query: 7 VFFFVCAILAVHVARSSSATLDFDSLFLPLKSGC---RGSVAECSLLDEEFLMDSETNRRILA-GRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
+ F ILA+ VA+S +AT PL C +G + E L E LMDSETNRR LA GRRYI Y AL++N VPCSRRG SYY+C+ + NPYRRGCSAIT C R
Sbjct: 6 LLIFGLLILAM-VAKSVNATY-------PLTKSCINGQGCIGEDDEL--ESLMDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYR 107
BLAST of Cc_v2.0_27940.1 vs. Araport11
Match: | (Symbols: RALFL31 | ralf-like 31 | chr4:8058268-8058609 REVERSE LENGTH=113) HSP 1 Score: 76.2554 bits (186), Expect = 5.754e-19 Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0
Query: 51 DEEFLMDSETNRRIL-AGRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
++E LM +E +RR+L A +RYI Y LRR+ VPC + GASYY+CR G QAN Y RGC ITRC R
Sbjct: 43 EDEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYSRGCDTITRCAR 106
BLAST of Cc_v2.0_27940.1 vs. Araport11
Match: | (Symbols: RALFL24 | ralf-like 24 | chr3:8586467-8586823 FORWARD LENGTH=118) HSP 1 Score: 69.707 bits (169), Expect = 2.214e-16 Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 0
Query: 58 SETNRRILAGRR-YISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCRR 114
SE +RR++ R+ YISY LRR+ VPC + GASYY CR G QAN Y RGCS ITRC R
Sbjct: 55 SEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRCAR 111 The following BLAST results are available for this feature:
BLAST of Cc_v2.0_27940.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Cc_v2.0_27940.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot ) Total hits: 10
BLAST of Cc_v2.0_27940.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30
Sequences
The
following sequences are available for this feature:
mRNA sequence >drCajCajn.Asha.2.0.Cc_v2.0_27940.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_27940.1; Name=Cc_v2.0_27940.1; organism=Cajanus cajan; type=mRNA; length=345bpback to top protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_27940.1 >drCajCajn.Asha.2.0.Cc_v2.0_27940.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_27940.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_27940.1; organism=Cajanus cajan; type=polypeptide; length=114bpback to top mRNA from alignment at CcLG11_v2.0:55119927..55120757- Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>drCajCajn.Asha.2.0.Cc_v2.0_27940.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_27940.1; Name=Cc_v2.0_27940.1; organism=Cajanus cajan; type=mRNA; length=831bp; location=Sequence derived from: CcLG11_v2.0:55119927..55120757- (Cajanus cajanback to top Coding sequence (CDS) from alignment at CcLG11_v2.0:55119927..55120757- >drCajCajn.Asha.2.0.Cc_v2.0_27940.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_27940.1; Name=Cc_v2.0_27940.1; organism=Cajanus cajan; type=CDS; length=345bp; location=Sequence derived from: CcLG11_v2.0:55119927..55120757- (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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