Va01G001440.1

Transcript Overview
NameVa01G001440.1
Unique NameVa01G001440.1_Jingnong6
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length453
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr1chromosomeChr1:1003177..1005836 -Vigna angularis cv. Jingnong6 genome v1.7.1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
avjavjR208Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanR214Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcanR240Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaR254Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
avjcaR281Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
avjccR0338Cajanus cajan Asha genome v1.0Cajanus cajan
anavjL0494Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anavjL0517Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anavjL0553Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anavjL0781Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anavjL1029Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjpsR297Pisum sativum Cameor genome v1aPisum sativum
avjpsR299Pisum sativum Cameor genome v1aPisum sativum
avjpsR306Pisum sativum Cameor genome v1aPisum sativum
avjpvR247Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
avjpvR276Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
avjvfhR283Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
avjvfhR336Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
avjvrvR178Vigna radiata cv. VC1973A genome v6.0Vigna radiata
avjvuR181Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjvuR187Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjvrvR241Vigna radiata cv. VC1973A genome v6.0Vigna radiata
avjvuR198Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjvssR304Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjvssR327Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjcarR236Cicer arietinum
avjcarR262Cicer arietinum
avjvumR168Vigna umbellata FF25 genome v1.0Vigna umbellata
avjvumR198Vigna umbellata FF25 genome v1.0Vigna umbellata
avjccaR273Cajanus cajan cv. Asha genome v2.0Cajanus cajan
avjccaR306Cajanus cajan cv. Asha genome v2.0Cajanus cajan
avjvumR272Vigna umbellata FF25 genome v1.0Vigna umbellata
avjvvaR262Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvvaR289Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvvaR305Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvasR170Vigna angularis cv. Shumari genome v1.a1Vigna angularis
avjvstR175Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
avjvasR182Vigna angularis cv. Shumari genome v1.a1Vigna angularis
avjvstR193Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
avjvunR154Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
avjvunR160Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
avjpvfR245Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
avjpvfR270Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
XM_058916296.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_004503306.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun03g012800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat7g008680.1Pisum sativum Cameor genome v1aPisum sativum
XM_058878347.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vum_01G00141.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Hedin2.R1.6g193280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Ca_10426Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_014650205.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Cc_v2.0_23000.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Phvul.002G320300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_016027Cajanus cajan Asha genome v1.0Cajanus cajan
Vigun03g012800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
PvulFLAVERTChr02.1873Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigst.01G011800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigan.01G016300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Va01G001440Va01G001440_Jingnong6Vigna angularisgene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va01G001440.1:three_prime_UTR_1_Jingnong6Va01G001440.1:three_prime_UTR_1_Jingnong6Vigna angularisthree_prime_UTR
Va01G001440.1:three_prime_UTR_2_Jingnong6Va01G001440.1:three_prime_UTR_2_Jingnong6Vigna angularisthree_prime_UTR
Va01G001440.1:three_prime_UTR_3_Jingnong6Va01G001440.1:three_prime_UTR_3_Jingnong6Vigna angularisthree_prime_UTR
Va01G001440.1:three_prime_UTR_4_Jingnong6Va01G001440.1:three_prime_UTR_4_Jingnong6Vigna angularisthree_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va01G001440.1:exon_1_Jingnong6Va01G001440.1:exon_1_Jingnong6Vigna angularisexon
Va01G001440.1:exon_2_Jingnong6Va01G001440.1:exon_2_Jingnong6Vigna angularisexon
Va01G001440.1:exon_3_Jingnong6Va01G001440.1:exon_3_Jingnong6Vigna angularisexon
Va01G001440.1:exon_4_Jingnong6Va01G001440.1:exon_4_Jingnong6Vigna angularisexon
Va01G001440.1:exon_5_Jingnong6Va01G001440.1:exon_5_Jingnong6Vigna angularisexon
Va01G001440.1:exon_6_Jingnong6Va01G001440.1:exon_6_Jingnong6Vigna angularisexon
Va01G001440.1:exon_7_Jingnong6Va01G001440.1:exon_7_Jingnong6Vigna angularisexon
Va01G001440.1:exon_8_Jingnong6Va01G001440.1:exon_8_Jingnong6Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va01G001440.1_Jingnong6-cdsVa01G001440.1_Jingnong6-cds-Chr1_Jingnong6:1004544..1004567Vigna angularisCDS
Va01G001440.1_Jingnong6-cdsVa01G001440.1_Jingnong6-cds-Chr1_Jingnong6:1005137..1005263Vigna angularisCDS
Va01G001440.1_Jingnong6-cdsVa01G001440.1_Jingnong6-cds-Chr1_Jingnong6:1005333..1005397Vigna angularisCDS
Va01G001440.1_Jingnong6-cdsVa01G001440.1_Jingnong6-cds-Chr1_Jingnong6:1005480..1005545Vigna angularisCDS
Va01G001440.1_Jingnong6-cdsVa01G001440.1_Jingnong6-cds-Chr1_Jingnong6:1005634..1005804Vigna angularisCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va01G001440.1:five_prime_UTR_1_Jingnong6Va01G001440.1:five_prime_UTR_1_Jingnong6Vigna angularisfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Va01G001440.1_Jingnong6Va01G001440.1_Jingnong6Vigna angularispolypeptide
Va01G001440.1_Jingnong6Va01G001440.1_Jingnong6-proteinVigna angularispolypeptide


Homology
[Close]
BLAST of Va01G001440.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3QWL3|A0A0S3QWL3_PHAAN (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G016300 PE=4 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 1.621e-88
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0 
Query:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEPRLSKI 144
            MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEPRL+ +
Sbjct:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEPRLNNL 144
[Close]
BLAST of Va01G001440.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9T8B4|A0A0L9T8B4_PHAAN (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Phaseolus angularis OX=3914 GN=LR48_Vigan325s002200 PE=4 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 9.853e-88
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0 
Query:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEPRLSKI 144
            MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEPRL+ +
Sbjct:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEPRLNNL 144
[Close]
BLAST of Va01G001440.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6LAB1|A0A4D6LAB1_VIGUN (Protein FAM50 OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g5720 PE=4 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 1.620e-87
Identity = 140/144 (97.22%), Postives = 142/144 (98.61%), Query Frame = 0 
Query:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEPRLSKI 144
            MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEPR + +
Sbjct:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEPRHNNL 144
[Close]
BLAST of Va01G001440.1 vs. UniProtKB/TrEMBL
Match: tr|V7CQM1|V7CQM1_PHAVU (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G320300g PE=4 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.232e-86
Identity = 139/144 (96.53%), Postives = 141/144 (97.92%), Query Frame = 0 
Query:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEPRLSKI 144
            MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSE QEEEEEEPR + +
Sbjct:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSEPQEEEEEEPRHNNL 144
[Close]
BLAST of Va01G001440.1 vs. UniProtKB/TrEMBL
Match: tr|A0A8T0LIU7|A0A8T0LIU7_PHAAN (Protein XAP5 CIRCADIAN OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0017530 PE=4 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.404e-86
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0 
Query:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEPR 140
            MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEP 
Sbjct:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEPH 140
[Close]
BLAST of Va01G001440.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UI33|A0A1S3UI33_VIGRR (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Vigna radiata var. radiata OX=3916 GN=LOC106765541 PE=4 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 3.915e-85
Identity = 139/144 (96.53%), Postives = 141/144 (97.92%), Query Frame = 0 
Query:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEPRLSKI 144
            MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQ EEEEEPR + +
Sbjct:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQ-EEEEEPRHNNL 143
[Close]
BLAST of Va01G001440.1 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8L718|A0A8B8L718_ABRPR (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Abrus precatorius OX=3816 GN=LOC113862913 PE=4 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 8.272e-83
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0 
Query:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEE 137
            MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDS+ QEEE E
Sbjct:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSDAQEEEPE 137
[Close]
BLAST of Va01G001440.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151T3A2|A0A151T3A2_CAJCA (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Cajanus cajan OX=3821 GN=KK1_016027 PE=4 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 5.423e-81
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0 
Query:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEP 139
            MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDID++  E +EEEP
Sbjct:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDND--EPQEEEP 137
[Close]
BLAST of Va01G001440.1 vs. UniProtKB/TrEMBL
Match: tr|B7FK45|B7FK45_MEDTR (Uncharacterized protein (Fragment) OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.871e-74
Identity = 125/136 (91.91%), Postives = 133/136 (97.79%), Query Frame = 0 
Query:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEE 136
            MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELK+KSA++ GQPGLLQFGSSTSEILETAFKKETVGLVTRE+YVEKRVNIQSKIEEEEKEKLQKQ QEEEELQL+KRKKRKIKGNSRLSF+EDID++ QEEEE
Sbjct:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKSKSATSNGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIQSKIEEEEKEKLQKQIQEEEELQLQKRKKRKIKGNSRLSFSEDIDNDAQEEEE 136
[Close]
BLAST of Va01G001440.1 vs. UniProtKB/TrEMBL
Match: tr|G7LAJ6|G7LAJ6_MEDTR (Putative XAP5 protein OS=Medicago truncatula OX=3880 GN=11410133 PE=4 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 7.290e-73
Identity = 125/136 (91.91%), Postives = 133/136 (97.79%), Query Frame = 0 
Query:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEE 136
            MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELK+KSA++ GQPGLLQFGSSTSEILETAFKKETVGLVTRE+YVEKRVNIQSKIEEEEKEKLQKQ QEEEELQL+KRKKRKIKGNSRLSF+EDID++ QEEEE
Sbjct:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKSKSATSNGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIQSKIEEEEKEKLQKQIQEEEELQLQKRKKRKIKGNSRLSFSEDIDNDAQEEEE 136
[Close]
BLAST of Va01G001440.1 vs. UniProtKB/Swiss-Prot
Match: Protein (XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. japonica OX=39947 GN=XCT PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 8.651e-55
Identity = 109/137 (79.56%), Postives = 126/137 (91.97%), Query Frame = 0 
Query:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEE 137
            MSG GDGYVGTAQDAV+IRRLEKQREAERRKI+ELK KS+   GQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNI++KIEEEEKEKLQK QQEEEELQ++KRKKR+++G+ RLSF ++I++ + E+E E
Sbjct:    1 MSGFGDGYVGTAQDAVKIRRLEKQREAERRKIEELKNKSSD--GQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIRTKIEEEEKEKLQKLQQEEEELQMQKRKKRRVRGDPRLSFCDEIENGSDEDEFE 135
[Close]
BLAST of Va01G001440.1 vs. UniProtKB/Swiss-Prot
Match: Protein (XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. indica OX=39946 GN=XCT PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 8.651e-55
Identity = 109/137 (79.56%), Postives = 126/137 (91.97%), Query Frame = 0 
Query:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEE 137
            MSG GDGYVGTAQDAV+IRRLEKQREAERRKI+ELK KS+   GQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNI++KIEEEEKEKLQK QQEEEELQ++KRKKR+++G+ RLSF ++I++ + E+E E
Sbjct:    1 MSGFGDGYVGTAQDAVKIRRLEKQREAERRKIEELKNKSSD--GQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIRTKIEEEEKEKLQKLQQEEEELQMQKRKKRRVRGDPRLSFCDEIENGSDEDEFE 135
[Close]
BLAST of Va01G001440.1 vs. UniProtKB/Swiss-Prot
Match: Protein (XAP5 CIRCADIAN TIMEKEEPER OS=Arabidopsis thaliana OX=3702 GN=XCT PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.406e-52
Identity = 111/138 (80.43%), Postives = 126/138 (91.30%), Query Frame = 0 
Query:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKR-KKRKIKGNSRLSFAEDIDSETQEEEEE 137
            MSGMGDGYVGTAQDAVRIRRL+KQREAER+KIQELK+KSAS   Q GLLQFG+S+ EIL+TAFKKETVGLVTRE+YVEKRVNI++K EEEEKEKLQK QQEEEELQLEKR KKRKIKG+SRLSFAED ++ + E++ E
Sbjct:    1 MSGMGDGYVGTAQDAVRIRRLQKQREAERKKIQELKSKSASGNDQSGLLQFGTSSCEILDTAFKKETVGLVTREEYVEKRVNIRNKFEEEEKEKLQKLQQEEEELQLEKRNKKRKIKGSSRLSFAEDFENGSDEDDGE 138
[Close]
BLAST of Va01G001440.1 vs. Araport11
Match: | (Symbols: XCT | XAP5 CIRCADIAN TIMEKEEPER | chr2:9065397-9067921 FORWARD LENGTH=337)

HSP 1 Score: 172.555 bits (436), Expect = 1.457e-53
Identity = 111/138 (80.43%), Postives = 126/138 (91.30%), Query Frame = 0 
Query:    1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKR-KKRKIKGNSRLSFAEDIDSETQEEEEE 137
            MSGMGDGYVGTAQDAVRIRRL+KQREAER+KIQELK+KSAS   Q GLLQFG+S+ EIL+TAFKKETVGLVTRE+YVEKRVNI++K EEEEKEKLQK QQEEEELQLEKR KKRKIKG+SRLSFAED ++ + E++ E
Sbjct:    1 MSGMGDGYVGTAQDAVRIRRLQKQREAERKKIQELKSKSASGNDQSGLLQFGTSSCEILDTAFKKETVGLVTREEYVEKRVNIRNKFEEEEKEKLQKLQQEEEELQLEKRNKKRKIKGSSRLSFAEDFENGSDEDDGE 138
The following BLAST results are available for this feature:
BLAST of Va01G001440.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A0S3QWL3|A0A0S3QWL3_PHAAN1.621e-8897.92Protein XAP5 CIRCADIAN TIMEKEEPER OS=Vigna angular... [more]
tr|A0A0L9T8B4|A0A0L9T8B4_PHAAN9.853e-8897.92Protein XAP5 CIRCADIAN TIMEKEEPER OS=Phaseolus ang... [more]
tr|A0A4D6LAB1|A0A4D6LAB1_VIGUN1.620e-8797.22Protein FAM50 OS=Vigna unguiculata OX=3917 GN=DEO7... [more]
tr|V7CQM1|V7CQM1_PHAVU1.232e-8696.53Protein XAP5 CIRCADIAN TIMEKEEPER OS=Phaseolus vul... [more]
tr|A0A8T0LIU7|A0A8T0LIU7_PHAAN2.404e-8699.29Protein XAP5 CIRCADIAN OS=Phaseolus angularis OX=3... [more]
tr|A0A1S3UI33|A0A1S3UI33_VIGRR3.915e-8596.53Protein XAP5 CIRCADIAN TIMEKEEPER OS=Vigna radiata... [more]
tr|A0A8B8L718|A0A8B8L718_ABRPR8.272e-8397.81Protein XAP5 CIRCADIAN TIMEKEEPER OS=Abrus precato... [more]
tr|A0A151T3A2|A0A151T3A2_CAJCA5.423e-8195.68Protein XAP5 CIRCADIAN TIMEKEEPER OS=Cajanus cajan... [more]
tr|B7FK45|B7FK45_MEDTR1.871e-7491.91Uncharacterized protein (Fragment) OS=Medicago tru... [more]
tr|G7LAJ6|G7LAJ6_MEDTR7.290e-7391.91Putative XAP5 protein OS=Medicago truncatula OX=38... [more]
back to top
BLAST of Va01G001440.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
Protein8.651e-5579.56XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. j... [more]
Protein8.651e-5579.56XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. i... [more]
Protein1.406e-5280.43XAP5 CIRCADIAN TIMEKEEPER OS=Arabidopsis thaliana ... [more]
back to top
BLAST of Va01G001440.1 vs. Araport11
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
|1.457e-5380.43Symbols: XCT | XAP5 CIRCADIAN TIMEKEEPER | chr2:90... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vigna angularis cv. Jingnong6 genome v1.7.1
Date Performed: 2024-05-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007005XAP5 proteinPANTHERPTHR12722XAP-5 PROTEIN-RELATEDcoord: 2..138

Sequences
The following sequences are available for this feature:

mRNA sequence

>Va01G001440.1_Jingnong6 ID=Va01G001440.1_Jingnong6; Name=Va01G001440.1; organism=Vigna angularis; type=mRNA; length=453bp
ATGTCGGGTATGGGTGACGGGTACGTGGGCACCGCCCAAGACGCGGTGAG
GATTCGACGGTTGGAGAAGCAGAGAGAAGCGGAGCGTCGCAAAATCCAAG
AACTCAAAACCAAGTCTGCCTCCGCCAAGGGCCAACCCGGTCTCCTCCAA
TTCGGTTCCAGCACTTCCGAGATTCTAGAGACCGCCTTCAAAAAAGAAAC
CGTGGGTTTGGTCACCAGAGAGCAGTATGTGGAGAAGAGGGTTAATATTC
AGAGCAAAATAGAGGAAGAAGAGAAGGAGAAACTTCAGAAGCAGCAGCAA
GAGGAGGAGGAGCTTCAATTAGAAAAGCGTAAAAAGAGGAAGATCAAGGG
CAATTCTCGACTTTCCTTTGCTGAGGATATTGATAGTGAAACCCAAGAGG
AGGAGGAGGAGGAACCACGTCTTAGTAAGATAATCTGGAAGCCAATAGGT
TAA
back to top

protein sequence of Va01G001440.1_Jingnong6

>Va01G001440.1_Jingnong6 ID=Va01G001440.1_Jingnong6; Name=Va01G001440.1_Jingnong6; organism=Vigna angularis; type=polypeptide; length=150bp
MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKGQPGLLQ
FGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQ
EEEELQLEKRKKRKIKGNSRLSFAEDIDSETQEEEEEEPRLSKIIWKPIG
back to top

mRNA from alignment at Chr1:1003177..1005836-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Va01G001440.1_Jingnong6 ID=Va01G001440.1_Jingnong6; Name=Va01G001440.1; organism=Vigna angularis; type=mRNA; length=2660bp; location=Sequence derived from: Chr1:1003177..1005836- (Vigna angularis
ATTTGAGTCTGAGTTGAGGAGCCAAGAAGAGGATGTCGGGTATGGGTGAC
GGGTACGTGGGCACCGCCCAAGACGCGGTGAGGATTCGACGGTTGGAGAA
GCAGAGAGAAGCGGAGCGTCGCAAAATCCAAGAACTCAAAACCAAGTCTG
CCTCCGCCAAGGGCCAACCCGGTCTCCTCCAATTCGGTTCCAGCACTTCC
GAGGTACCATGTTCTTCCAATTTCTGTCCTTTCTTCGTCTAGGGTTGCGC
TTTTCAATCTGACAATCATTTGAACTTTTCTTGAATTTCAGATTCTAGAG
ACCGCCTTCAAAAAAGAAACCGTGGGTTTGGTCACCAGAGAGCAGTATGT
GGAGAAGGTATGCGATCGCTTTCTTTACTTTTACATGGCATACTGGGTTG
TGACTGATGTTATGTTTGTTCTTTTATTTGTTAATGTAGAGGGTTAATAT
TCAGAGCAAAATAGAGGAAGAAGAGAAGGAGAAACTTCAGAAGCAGCAGC
AAGAGTTCGTCTTCTCCCCATTTTTTTCCCTTTTTTCTTTGCTTATAATT
ACGTATTCACAATCTTCAAACAGGGAGGAGGAGCTTCAATTAGAAAAGCG
TAAAAAGAGGAAGATCAAGGGCAATTCTCGACTTTCCTTTGCTGAGGATA
TTGATAGTGAAACCCAAGAGGAGGAGGAGGAGGAACCACGTCTTAGTAAG
TTGATGTTTGGAAATATTTGTTTATTTGATTTTAGGTAGATGATCACATG
TTTGATTTTACATGGAGGAGTTGACGATGGGGGTCCGGAATTGATTGAGT
TAAAGTTATATTTTTTGCATTGGATATAAAATTTCTTTTGTTACTAGCTT
ACTTTTAGAATACAAACATATGAACAGATATCAGATCACATTAAAATCAG
AATTTAGCTTGATTAGAGTTGGCTTCACTTCTGCCAAAGTCAATTCAGAT
TTCTATGTTGAAGGCTAAGCGACACAAAGTTGCTTCCAGGTTTTCAATGT
TTAACCGTGATTTCAGTTATAATCAATATCAGTTTTGTCAAATCAATGTC
ATTAAAATTCTTTCTTGCAAGGGATCATCCAAGCACACACCAAATCACTT
CACTTAACATCTCTGATTATTTTTGCAGTTTCAAATTGAGAGTTTTTCTT
TGTTTATCAATGTAGCATCATTTTCCACAAGAGGTTTAGACGGAGAATTG
TGAACGTGTATTGATCAATGATTTATAGAACACATAAAAAGACGTTGAAC
CTTGCTATGTTTCTGGCAGATAATCTGGAAGCCAATAGGTTAAGGCGTGG
TAAACTTGGTAAAGATCCTACTGTCGAAACTGGCTTTCTACCTGACAGGT
ATGTGTGGCATCTCTTCTTTATCCTTTTCCCTTATTATTTTTTACACCCC
TTCCCTAGCTATGAAGCATGGACACAACTCTTCAATGTTGTGTCCCCGTG
TCAGACACTGATACTTGTACAACACCCGTATTACACATGTCAGACACTCT
GCTGAAGTGCTGAATTTTAAAAATGAATTTTTGCAGCTCTAGCACTACTC
TAAAATCTGAGTTAACGAGGATAGACATGGTGATTTTTTGGTAGTTGGAA
ATTAAAAAAACTTTTTCTGTAAATTTCTATTATAGTTATAGAAATAATAA
TAGGAGTATTTTATTCCGATTATCTATGTATTATTAGGATCATCTTCGGT
CACTACTGGTTCAGATTGTTATATTTGACTAACTATTTTTACAGATGATT
TTGAATATAATCTTGATTGTCAATTTAAATGATCGATGAAGTTGTTCAAT
ATGTGTATATAACATGTGTGTAGGTGGGTGGGGGAGGGTGTTTGGAATGT
ACCTGTCGTGTCTGGTCTCTGTGTCCGTGCTTCATAGTTCCCTTGTACTT
TTCTTTCTTGGTTGTTGCCCTAACGTTCGGGCATAGGAGTGCTGAGGATT
CCTGTTCAGTGAGAGAGAGGCTGAGGAGCAAGCAGAGCGGGAAAGGCTGC
GGAAACAGTGGCTCCGTGAGCAGGAGCAAATCCGAAGTGAGTATGCTGCA
TCAATGCTTGTTTCGACTGAGAATCTTTTGAACTCTGCTTGTTTCGACTG
AGAATCTTTTGAACTCTTTTTGAAACCATGCTAATGAAGGGTTAACAAGT
ATATGGATAATGCAATATGATTATATATAAGTGGGGGAAGTTATGCTTAT
TTGCCCCCTGGGTGTACAAATTAGCTGATGCAGAAAAACAACCATTTCAT
AGTTTACGCTTAATGAGGTTATTTCTGTACTTCAGATGAACCTCTTGAAA
TCACTTACAGCTACTGGGATGGAACTGGTCACAGGCGTGTGATCCAGGTA
AGTAAAGATCATATGCTTCAACTTCTCAAATTCTTGAACATGTCTTTACT
GTGTATGATCTTATGACTTGGTGCCTGAATTATTTTATAATATCTTTCAG
GTACGCAAGGGTGACAGCATAGGAGAGTTTCTTCGTGCAGTTCAACAGCA
GCTTGCTCCTGAATTCCGAGAGATTCGAACAACTTCCGTAGAAAATTTGC
TATATGTGAAAGAAGACCTTATCATTCCACATGTATGTACATTTGATTGG
TTTTAGTTTCAGAAAGTCTGTACTATTTGCTATCTTGTTTGTGAGTGTAG
TGTGTTGTGT
back to top

Coding sequence (CDS) from alignment at Chr1:1003177..1005836-

>Va01G001440.1_Jingnong6 ID=Va01G001440.1_Jingnong6; Name=Va01G001440.1; organism=Vigna angularis; type=CDS; length=453bp; location=Sequence derived from: Chr1:1003177..1005836- (Vigna angularis
ATGTCGGGTATGGGTGACGGGTACGTGGGCACCGCCCAAGACGCGGTGAG
GATTCGACGGTTGGAGAAGCAGAGAGAAGCGGAGCGTCGCAAAATCCAAG
AACTCAAAACCAAGTCTGCCTCCGCCAAGGGCCAACCCGGTCTCCTCCAA
TTCGGTTCCAGCACTTCCGAGATTCTAGAGACCGCCTTCAAAAAAGAAAC
CGTGGGTTTGGTCACCAGAGAGCAGTATGTGGAGAAGAGGGTTAATATTC
AGAGCAAAATAGAGGAAGAAGAGAAGGAGAAACTTCAGAAGCAGCAGCAA
GAGGAGGAGGAGCTTCAATTAGAAAAGCGTAAAAAGAGGAAGATCAAGGG
CAATTCTCGACTTTCCTTTGCTGAGGATATTGATAGTGAAACCCAAGAGG
AGGAGGAGGAGGAACCACGTCTTAGTAAGATAATCTGGAAGCCAATAGGT
TAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007005XAP5
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus