Va02G047030.1

Transcript Overview
NameVa02G047030.1
Unique NameVa02G047030.1_Jingnong6
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length321
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr2chromosomeChr2:28220063..28220789 +Vigna angularis cv. Jingnong6 genome v1.7.1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
avjavjR242Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjavjR248Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanR301Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcanR322Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccR0665Cajanus cajan Asha genome v1.0Cajanus cajan
avjpvR370Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
avjvfhR377Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
avjvfhR396Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
avjpvR432Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
avjvfhR433Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
avjvrvR284Vigna radiata cv. VC1973A genome v6.0Vigna radiata
avjvrvR304Vigna radiata cv. VC1973A genome v6.0Vigna radiata
avjvuR282Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjvuR316Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjvssR399Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjvssR452Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjvssR462Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjcarR331Cicer arietinum
avjcarR352Cicer arietinum
avjvumR296Vigna umbellata FF25 genome v1.0Vigna umbellata
avjccaR337Cajanus cajan cv. Asha genome v2.0Cajanus cajan
avjccaR350Cajanus cajan cv. Asha genome v2.0Cajanus cajan
avjccaR387Cajanus cajan cv. Asha genome v2.0Cajanus cajan
avjvumR337Vigna umbellata FF25 genome v1.0Vigna umbellata
avjvvaR348Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvvaR374Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvasR318Vigna angularis cv. Shumari genome v1.a1Vigna angularis
avjvasR340Vigna angularis cv. Shumari genome v1.a1Vigna angularis
avjvunR232Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
avjvunR262Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Va02G047030Va02G047030_Jingnong6Vigna angularisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va02G047030.1:exon_1_Jingnong6Va02G047030.1:exon_1_Jingnong6Vigna angularisexon
Va02G047030.1:exon_2_Jingnong6Va02G047030.1:exon_2_Jingnong6Vigna angularisexon
Va02G047030.1:exon_3_Jingnong6Va02G047030.1:exon_3_Jingnong6Vigna angularisexon
Va02G047030.1:exon_4_Jingnong6Va02G047030.1:exon_4_Jingnong6Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va02G047030.1_Jingnong6-cdsVa02G047030.1_Jingnong6-cds-Chr2_Jingnong6:28220063..28220109Vigna angularisCDS
Va02G047030.1_Jingnong6-cdsVa02G047030.1_Jingnong6-cds-Chr2_Jingnong6:28220186..28220293Vigna angularisCDS
Va02G047030.1_Jingnong6-cdsVa02G047030.1_Jingnong6-cds-Chr2_Jingnong6:28220384..28220459Vigna angularisCDS
Va02G047030.1_Jingnong6-cdsVa02G047030.1_Jingnong6-cds-Chr2_Jingnong6:28220700..28220789Vigna angularisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Va02G047030.1_Jingnong6Va02G047030.1_Jingnong6Vigna angularispolypeptide
Va02G047030.1_Jingnong6Va02G047030.1_Jingnong6-proteinVigna angularispolypeptide


Homology
BLAST of Va02G047030.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SI65|A0A0S3SI65_PHAAN (Ubiquitin-like protease family profile domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G128300 PE=4 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.164e-69
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0
Query:    1 FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHILSRKKLQFIAPTIFDDTSPMEQHVIKDVREQWAAFLLTICK 106
            FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHILSRKKLQFIAPTIFDDTSPMEQHVIKDVREQWAAFLLTICK
Sbjct:  188 FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHILSRKKLQFIAPTIFDDTSPMEQHVIKDVREQWAAFLLTICK 293          
BLAST of Va02G047030.1 vs. UniProtKB/TrEMBL
Match: tr|A0A8T0KG74|A0A8T0KG74_PHAAN (Ubiquitin-like protease family profile domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0086290 PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 4.755e-59
Identity = 105/138 (76.09%), Postives = 106/138 (76.81%), Query Frame = 0
Query:    1 FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHILSRKKLQFIAPT--------------------------------IFDDTSPMEQHVIKDVREQWAAFLLTICK 106
            FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHI+SRKKLQFIAPT                                IFDDTSPMEQHVIKDVREQWAAFLLTICK
Sbjct:  589 FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHIVSRKKLQFIAPTCSRQPGSFECGYYVMRHMQKIISANIIDSWKLIFDDTSPMEQHVIKDVREQWAAFLLTICK 726          
BLAST of Va02G047030.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0FKM2|A0A3Q0FKM2_VIGRR (Uncharacterized protein LOC106775417 OS=Vigna radiata var. radiata OX=3916 GN=LOC106775417 PE=4 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.325e-52
Identity = 92/138 (66.67%), Postives = 100/138 (72.46%), Query Frame = 0
Query:    1 FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHILSRKKLQFIAPT--------------------------------IFDDTSPMEQHVIKDVREQWAAFLLTICK 106
            F  GKK+VYLAPYLQQGHWQLLLILPQQFLVVLLCSLH+KPHTLAIK+TLI VV+AYSRLQGTHI SR KL+FIAPT                                IFDDTSPMEQHVIKDVRE+WAAFLLT+ +
Sbjct:  285 FEKGKKEVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHRKPHTLAIKSTLISVVKAYSRLQGTHIGSRNKLKFIAPTCSRQTGSFESGYYVMRHMQKIISANVVDSWNLIFDDTSPMEQHVIKDVREEWAAFLLTVYR 422          
BLAST of Va02G047030.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RTN1|A0A0S3RTN1_PHAAN (Ubiquitin-like protease family profile domain-containing protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G121400 PE=4 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.595e-46
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
Query:    1 FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHILSRKKLQFIAPT 77
            FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHILSRKKLQFIAPT
Sbjct:  117 FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHILSRKKLQFIAPT 193          
BLAST of Va02G047030.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9USM7|A0A0L9USM7_PHAAN (Ubiquitin-like protease family profile domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g088300 PE=4 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.018e-38
Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = 0
Query:    1 FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHILSRKKLQFIAPTIFDDTSPMEQHVIKDVREQWAAFLLTICK 106
            F    K+VYLAPYL +GHWQLL+I P + LVVLLCSLHKK +TL+IKN L   +EA+SRL+G   +SRKK+Q I P IF+D+SPME   I+D+R  WA+F+L++ +
Sbjct:    2 FEKAGKEVYLAPYLHKGHWQLLVIAPDRSLVVLLCSLHKKGNTLSIKNILEASLEAHSRLRGVPSISRKKMQIITPNIFNDSSPMEAIDIEDIRRNWASFILSVSR 107          
BLAST of Va02G047030.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9UKJ5|A0A0L9UKJ5_PHAAN (Ubiquitin-like protease family profile domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g088700 PE=4 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.684e-35
Identity = 59/106 (55.66%), Postives = 79/106 (74.53%), Query Frame = 0
Query:    1 FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHILSRKKLQFIAPTIFDDTSPMEQHVIKDVREQWAAFLLTICK 106
            F    K+ YLAPYL +GHWQLL+I+P + LVVLLCSLHKK +TL+IKN L   +EAYSRL+G   +SRKK+Q   P IF+D+S ME   I+D+R  WA+F+L++ +
Sbjct:   91 FEKAGKEAYLAPYLHKGHWQLLVIVPDRPLVVLLCSLHKKANTLSIKNILEASLEAYSRLRGVPSVSRKKMQITTPNIFNDSSSMEVADIEDIRRNWASFILSVSR 196          
BLAST of Va02G047030.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9UC77|A0A0L9UC77_PHAAN (Ubiquitin-like protease family profile domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g070800 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.217e-30
Identity = 60/138 (43.48%), Postives = 80/138 (57.97%), Query Frame = 0
Query:    1 FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHILSRKKLQFIAPT--------------------------------IFDDTSPMEQHVIKDVREQWAAFLLTICK 106
            F    K+VYLAPYL++GHWQLL+I+P + LVVLLCSLHKK +TL+IKN L   +EAYSRLQG   +SRK +Q   P                                 IF+D+S ME   I+D+R  WA+F+L++ +
Sbjct:   91 FEKAGKEVYLAPYLRKGHWQLLVIVPDRSLVVLLCSLHKKANTLSIKNILEASLEAYSRLQGVPSVSRKNMQITTPNCRRQLGSYECGYYVMKHMHTIICTNITESWNKIFNDSSSMEVADIEDIRRNWASFILSVSR 228          
BLAST of Va02G047030.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9T3R4|A0A0L9T3R4_PHAAN (Ubiquitin-like protease family profile domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan62s000500 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.689e-29
Identity = 59/138 (42.75%), Postives = 81/138 (58.70%), Query Frame = 0
Query:    1 FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHILSRKKLQFIAP--------------------------------TIFDDTSPMEQHVIKDVREQWAAFLLTICK 106
            F    K+VYLAPYL +GHW+LL+I+P + LVVLLCSLHKK +TL+IKN L   +EA+SRL+G   +SRKK+Q I P                                 IF+D+SPM+   I D+R  WA+F+L++ +
Sbjct:   56 FEKAGKEVYLAPYLHKGHWKLLVIVPNRSLVVLLCSLHKKANTLSIKNILEASLEAHSRLRGVPSVSRKKMQIITPHCRRQLGSYECGYYVMKHMHTIICTNITESWNKIFNDSSPMKVADIDDIRRNWASFILSVSR 193          
BLAST of Va02G047030.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9UAJ2|A0A0L9UAJ2_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g316000 PE=4 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.508e-27
Identity = 50/90 (55.56%), Postives = 70/90 (77.78%), Query Frame = 0
Query:   17 GHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHILSRKKLQFIAPTIFDDTSPMEQHVIKDVREQWAAFLLTICK 106
            GHWQLL+I+P + LVVLLCSLHKK +TL++KN L   +EA+SRL+G   +SRKK+Q I P IF+D+SPM+   I+D+R  WA F+L++ +
Sbjct:  145 GHWQLLVIVPDRSLVVLLCSLHKKANTLSMKNILEASLEAHSRLRGVPSISRKKMQIITPNIFNDSSPMKAVDIEDIRRSWAYFILSVSR 234          
BLAST of Va02G047030.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UFD0|A0A1S3UFD0_VIGRR (Uncharacterized protein LOC106764840 OS=Vigna radiata var. radiata OX=3916 GN=LOC106764840 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.126e-26
Identity = 59/138 (42.75%), Postives = 82/138 (59.42%), Query Frame = 0
Query:    1 FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTLILVVEAYSRLQGTHILSRKKLQFIAPT--------------------------------IFDDTSPMEQHVIKDVREQWAAFLLTICK 106
            F    K+VYLAPYL +GHWQL++I+P + LVVLLCSLHKK +TL+IKN L + +EAYS+L+G    SRKK+Q + P                                 IF D+S ME  +I+D+R +WA+F+L++ K
Sbjct:  987 FEKASKEVYLAPYLHKGHWQLIVIVPNRSLVVLLCSLHKKANTLSIKNMLEMSLEAYSKLRGIPSGSRKKMQIVTPNCRRQLDSYECGYYVMKHMHTIICTNITDSWDKIFIDSSSMEAPIIEDIRIKWASFILSVSK 1124          
The following BLAST results are available for this feature:
BLAST of Va02G047030.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A0S3SI65|A0A0S3SI65_PHAAN1.164e-69100.00Ubiquitin-like protease family profile domain-cont... [more]
tr|A0A8T0KG74|A0A8T0KG74_PHAAN4.755e-5976.09Ubiquitin-like protease family profile domain-cont... [more]
tr|A0A3Q0FKM2|A0A3Q0FKM2_VIGRR8.325e-5266.67Uncharacterized protein LOC106775417 OS=Vigna radi... [more]
tr|A0A0S3RTN1|A0A0S3RTN1_PHAAN4.595e-46100.00Ubiquitin-like protease family profile domain-cont... [more]
tr|A0A0L9USM7|A0A0L9USM7_PHAAN1.018e-3857.55Ubiquitin-like protease family profile domain-cont... [more]
tr|A0A0L9UKJ5|A0A0L9UKJ5_PHAAN1.684e-3555.66Ubiquitin-like protease family profile domain-cont... [more]
tr|A0A0L9UC77|A0A0L9UC77_PHAAN9.217e-3043.48Ubiquitin-like protease family profile domain-cont... [more]
tr|A0A0L9T3R4|A0A0L9T3R4_PHAAN4.689e-2942.75Ubiquitin-like protease family profile domain-cont... [more]
tr|A0A0L9UAJ2|A0A0L9UAJ2_PHAAN1.508e-2755.56Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|A0A1S3UFD0|A0A1S3UFD0_VIGRR1.126e-2642.75Uncharacterized protein LOC106764840 OS=Vigna radi... [more]
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BLAST of Va02G047030.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Va02G047030.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Va02G047030.1_Jingnong6 ID=Va02G047030.1_Jingnong6; Name=Va02G047030.1; organism=Vigna angularis; type=mRNA; length=321bp
TTTGTAAACGGAAAAAAGCAAGTGTACTTAGCACCTTATTTGCAACAGGG
TCACTGGCAATTGTTACTAATTCTTCCTCAACAGTTTCTTGTAGTTCTCT
TATGTTCATTGCACAAAAAACCTCACACTTTGGCAATTAAAAATACACTA
ATATTAGTGGTTGAGGCATATTCAAGGTTGCAGGGAACACATATCCTCTC
TAGAAAGAAGTTGCAGTTCATTGCACCAACTATATTTGATGACACGTCTC
CAATGGAACAACATGTCATAAAGGATGTTCGGGAGCAATGGGCTGCATTT
CTTTTAACCATTTGTAAATGA
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protein sequence of Va02G047030.1_Jingnong6

>Va02G047030.1_Jingnong6 ID=Va02G047030.1_Jingnong6; Name=Va02G047030.1_Jingnong6; organism=Vigna angularis; type=polypeptide; length=106bp
FVNGKKQVYLAPYLQQGHWQLLLILPQQFLVVLLCSLHKKPHTLAIKNTL
ILVVEAYSRLQGTHILSRKKLQFIAPTIFDDTSPMEQHVIKDVREQWAAF
LLTICK
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mRNA from alignment at Chr2:28220063..28220789+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Va02G047030.1_Jingnong6 ID=Va02G047030.1_Jingnong6; Name=Va02G047030.1; organism=Vigna angularis; type=mRNA; length=727bp; location=Sequence derived from: Chr2:28220063..28220789+ (Vigna angularis
TTTGTAAACGGAAAAAAGCAAGTGTACTTAGCACCTTATTTGCAACAGTA AGTATATAATTTTTATTAATAAAATTTTATTTATGTAAATGTTATTTAAC ACTATTATTGTTTGAATCTACAGGGGTCACTGGCAATTGTTACTAATTCT TCCTCAACAGTTTCTTGTAGTTCTCTTATGTTCATTGCACAAAAAACCTC ACACTTTGGCAATTAAAAATACACTAATATTGTAAGTTTTTAATAATTTA TTTGTAGTGTAGACATATATGATCTTACTAAGTTCCTTAGGACTCATTTC AATGTACATTTAACTTTATAGAGTGGTTGAGGCATATTCAAGGTTGCAGG GAACACATATCCTCTCTAGAAAGAAGTTGCAGTTCATTGCACCAACTGTA AGTAGTTAATCTTTCAAACTATAAATACAATTATAAATTTTATGATACTT TATAAATTTAACTTGTAGTGCTCACGTCAACCGGGAAGCTTTGAGTGCGG ATATTATGTCATGAGGCACATGCAGAAAATTATATCCGCAAATGTCGTTG ACTCATGGAAATTGGTAACATGAACAATTATAACTAAGATCTTAAGTCAT TAATATTATAACTTTACTCAAACTATTCATTGTGTAGATATTTGATGACA CGTCTCCAATGGAACAACATGTCATAAAGGATGTTCGGGAGCAATGGGCT GCATTTCTTTTAACCATTTGTAAATGA
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Coding sequence (CDS) from alignment at Chr2:28220063..28220789+

>Va02G047030.1_Jingnong6 ID=Va02G047030.1_Jingnong6; Name=Va02G047030.1; organism=Vigna angularis; type=CDS; length=321bp; location=Sequence derived from: Chr2:28220063..28220789+ (Vigna angularis
TTTGTAAACGGAAAAAAGCAAGTGTACTTAGCACCTTATTTGCAACAGGG
TCACTGGCAATTGTTACTAATTCTTCCTCAACAGTTTCTTGTAGTTCTCT
TATGTTCATTGCACAAAAAACCTCACACTTTGGCAATTAAAAATACACTA
ATATTAGTGGTTGAGGCATATTCAAGGTTGCAGGGAACACATATCCTCTC
TAGAAAGAAGTTGCAGTTCATTGCACCAACTATATTTGATGACACGTCTC
CAATGGAACAACATGTCATAAAGGATGTTCGGGAGCAATGGGCTGCATTT
CTTTTAACCATTTGTAAATGA
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