Va03G037710.1

Transcript Overview
NameVa03G037710.1
Unique NameVa03G037710.1_Jingnong6
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length597
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr3chromosomeChr3:21253648..21254847 +Vigna angularis cv. Jingnong6 genome v1.7.1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
avjavjL122Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanR382Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcanR392Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcanR445Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpsR446Pisum sativum Cameor genome v1aPisum sativum
avjpsR481Pisum sativum Cameor genome v1aPisum sativum
avjpvR481Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
avjvfhR511Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
avjvfhR519Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
avjvfhR536Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
avjvrvR355Vigna radiata cv. VC1973A genome v6.0Vigna radiata
avjvuR350Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjvuR381Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjvssR498Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjvssR564Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjcarR418Cicer arietinum
avjcarR439Cicer arietinum
avjcarR489Cicer arietinum
avjvumR392Vigna umbellata FF25 genome v1.0Vigna umbellata
avjvumR424Vigna umbellata FF25 genome v1.0Vigna umbellata
avjccaR474Cajanus cajan cv. Asha genome v2.0Cajanus cajan
avjvvaR487Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvvaR537Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvvaR539Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvasR379Vigna angularis cv. Shumari genome v1.a1Vigna angularis
avjvasR422Vigna angularis cv. Shumari genome v1.a1Vigna angularis
avjvstR446Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
avjvunR294Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
avjvunR320Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
avjpvfR471Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Va03G037710Va03G037710_Jingnong6Vigna angularisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va03G037710.1:exon_1_Jingnong6Va03G037710.1:exon_1_Jingnong6Vigna angularisexon
Va03G037710.1:exon_2_Jingnong6Va03G037710.1:exon_2_Jingnong6Vigna angularisexon
Va03G037710.1:exon_3_Jingnong6Va03G037710.1:exon_3_Jingnong6Vigna angularisexon
Va03G037710.1:exon_4_Jingnong6Va03G037710.1:exon_4_Jingnong6Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va03G037710.1_Jingnong6-cdsVa03G037710.1_Jingnong6-cds-Chr3_Jingnong6:21253648..21253753Vigna angularisCDS
Va03G037710.1_Jingnong6-cdsVa03G037710.1_Jingnong6-cds-Chr3_Jingnong6:21253925..21254219Vigna angularisCDS
Va03G037710.1_Jingnong6-cdsVa03G037710.1_Jingnong6-cds-Chr3_Jingnong6:21254458..21254599Vigna angularisCDS
Va03G037710.1_Jingnong6-cdsVa03G037710.1_Jingnong6-cds-Chr3_Jingnong6:21254794..21254847Vigna angularisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Va03G037710.1_Jingnong6Va03G037710.1_Jingnong6Vigna angularispolypeptide
Va03G037710.1_Jingnong6Va03G037710.1_Jingnong6-proteinVigna angularispolypeptide


Homology
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9U4R6|A0A0L9U4R6_PHAAN (S5 DRBM domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g115300 PE=4 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 5.977e-141
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0 
Query:    1 MVAIFSHFPLLSPAFAVAHRLPPLRQTPTPPFPPLRHEVRVWQNTGFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHRMGVQQKLISFFFHSSLVFIMFPLVGSSQEHQKITSSPSRTKDNNHIKMSPRLSNKEPVGFEWGS 198
            MVAIFSHFPLLSPAFAVAHRLPPLRQTPTPPFPPLRHEVRVWQNTGFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHRMGVQQKLISFFFHSSLVFIMFPLVGSSQEHQKITSSPSRTKDNNHIKMSPRLSNKEPVGFEWGS
Sbjct:    1 MVAIFSHFPLLSPAFAVAHRLPPLRQTPTPPFPPLRHEVRVWQNTGFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHRMGVQQKLISFFFHSSLVFIMFPLVGSSQEHQKITSSPSRTKDNNHIKMSPRLSNKEPVGFEWGS 198
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3QZI0|A0A0S3QZI0_PHAAN (S5 DRBM domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G123500 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.371e-45
Identity = 84/97 (86.60%), Postives = 86/97 (88.66%), Query Frame = 0 
Query:   38 EVRVWQNTGFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHR 134
            +  V Q+TGFGSGTKK KV D FEERVVQVRRVTKVVKGGKQL FRAVV VGDKKGQVGVGV KAKEVV  VQKSASNARRNIVKVPMTKYSTFPHR
Sbjct:  123 DALVKQDTGFGSGTKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVIVGDKKGQVGVGVGKAKEVVAAVQKSASNARRNIVKVPMTKYSTFPHR 219
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TKB8|A0A0L9TKB8_PHAAN (30S ribosomal protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0008380 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.371e-45
Identity = 84/97 (86.60%), Postives = 86/97 (88.66%), Query Frame = 0 
Query:   38 EVRVWQNTGFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHR 134
            +  V Q+TGFGSGTKK KV D FEERVVQVRRVTKVVKGGKQL FRAVV VGDKKGQVGVGV KAKEVV  VQKSASNARRNIVKVPMTKYSTFPHR
Sbjct:  123 DALVKQDTGFGSGTKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVIVGDKKGQVGVGVGKAKEVVAAVQKSASNARRNIVKVPMTKYSTFPHR 219
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UVV2|A0A1S3UVV2_VIGRR (30S ribosomal protein S5, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106769216 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.591e-45
Identity = 83/97 (85.57%), Postives = 86/97 (88.66%), Query Frame = 0 
Query:   38 EVRVWQNTGFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHR 134
            +  V Q+TGFGSG+KK KV D FEERVVQVRRVTKVVKGGKQL FRAVV VGDKKGQVGVGV KAKEVV  VQKSASNARRNIVKVPMTKYSTFPHR
Sbjct:  123 DALVKQDTGFGSGSKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVIVGDKKGQVGVGVGKAKEVVAAVQKSASNARRNIVKVPMTKYSTFPHR 219
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6L779|A0A4D6L779_VIGUN (Small subunit ribosomal protein S5 OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g4720 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.037e-44
Identity = 83/97 (85.57%), Postives = 86/97 (88.66%), Query Frame = 0 
Query:   38 EVRVWQNTGFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHR 134
            +  V Q+TGFGSG+KK KV D FEERVVQVRRVTKVVKGGKQL FRAVV VGDKKGQVGVGV KAKEVV  VQKSASNARRNIVKVPMTKYSTFPHR
Sbjct:  123 DALVKQDTGFGSGSKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVIVGDKKGQVGVGVGKAKEVVAAVQKSASNARRNIVKVPMTKYSTFPHR 219
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151UAJ5|A0A151UAJ5_CAJCA (S5 DRBM domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_020536 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.548e-43
Identity = 80/97 (82.47%), Postives = 85/97 (87.63%), Query Frame = 0 
Query:   38 EVRVWQNTGFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHR 134
            + +V ++TGFGSG KK KV D FEERVVQVRRVTKVVKGGKQL FRAVV VGDKKGQVGVGV KAKEV+  VQKSA NARRNIVKVPMTKYSTFPHR
Sbjct:  126 DSKVKKDTGFGSGAKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNIVKVPMTKYSTFPHR 222
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/TrEMBL
Match: tr|A0A8T0KS28|A0A8T0KS28_PHAAN (30S ribosomal protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0246900 PE=4 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.947e-43
Identity = 80/107 (74.77%), Postives = 85/107 (79.44%), Query Frame = 0 
Query:   46 GFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHRMGVQQKLISFFFHSSLVF 152
            G  +  +KAKVCDEFEERVVQ+RRVTKVVKGGKQL FRAVV V DKKGQV VGVSKAKEVVV VQKSASNARRNI KVPMTKYSTFPHR  VQ       + S+ V 
Sbjct:   15 GVEASRRKAKVCDEFEERVVQIRRVTKVVKGGKQLRFRAVVIVDDKKGQVDVGVSKAKEVVVAVQKSASNARRNIAKVPMTKYSTFPHRC-VQDYQTKSLWASNAVL 120
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445I6A7|A0A445I6A7_GLYSO (30S ribosomal protein S5, chloroplastic OS=Glycine soja OX=3848 GN=D0Y65_031033 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.978e-43
Identity = 79/97 (81.44%), Postives = 84/97 (86.60%), Query Frame = 0 
Query:   38 EVRVWQNTGFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHR 134
            + +V + TGFGSG KK KV D FEERVVQVRRVTKVVKGGKQL FRAVV VGDKKGQVGVGV KAKEV+  VQKSA NARRNI+KVPMTKYSTFPHR
Sbjct:  138 DAKVKKETGFGSGAKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNIIKVPMTKYSTFPHR 234
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/TrEMBL
Match: tr|I1M091|I1M091_SOYBN (S5 DRBM domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_13G177900 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.978e-43
Identity = 79/97 (81.44%), Postives = 84/97 (86.60%), Query Frame = 0 
Query:   38 EVRVWQNTGFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHR 134
            + +V + TGFGSG KK KV D FEERVVQVRRVTKVVKGGKQL FRAVV VGDKKGQVGVGV KAKEV+  VQKSA NARRNI+KVPMTKYSTFPHR
Sbjct:  138 DAKVKKETGFGSGAKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNIIKVPMTKYSTFPHR 234
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/TrEMBL
Match: tr|V7CQX3|V7CQX3_PHAVU (S5 DRBM domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G229700g PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.288e-42
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 0 
Query:   38 EVRVWQNTGFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHR 134
            +  V ++TGFGSG KK K+ D FEERVVQVRRVTKVVKGGKQL FRAVV VGD+KGQVGVGV KAKEVV  VQKSA+NARRNI+KVPMTKYSTFPHR
Sbjct:  123 DALVKKDTGFGSGGKKEKIRDGFEERVVQVRRVTKVVKGGKQLRFRAVVIVGDRKGQVGVGVGKAKEVVAAVQKSAANARRNIIKVPMTKYSTFPHR 219
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/Swiss-Prot
Match: Small (ribosomal subunit protein uS5c OS=Spinacia oleracea OX=3562 GN=rps5 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 7.085e-39
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 0 
Query:   38 EVRVWQNTGFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHR 134
            + ++ + TGFGS +KK K+ D FEE VVQVRRVTKVVKGGK + FRA+V VGDKKGQVGVGV KAKEVV  VQK+A +ARRNI+ VPMTKY TFPHR
Sbjct:  130 DSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHR 226
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/Swiss-Prot
Match: Small (ribosomal subunit protein uS5c OS=Arabidopsis thaliana OX=3702 GN=rps5 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.423e-38
Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 0 
Query:   43 QNTGFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHR 134
            +++G G   KK K+ D FEERVVQVRRVTKVVKGGKQL FRA+V VGDK+G VGVG +KAKEVV  VQKSA +ARRNIV+VPMTKYSTFPHR
Sbjct:  130 KSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHR 221
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/Swiss-Prot
Match: Small (ribosomal subunit protein uS5c OS=Rhodomonas salina OX=52970 GN=rps5 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.403e-24
Identity = 43/75 (57.33%), Postives = 63/75 (84.00%), Query Frame = 0 
Query:   59 EFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPH 133
            +++ERVVQ+RRVTKVVKGGK+L FRA++ +G++KG+VGVGV KA +V+  V+K+ S+ ++ IV VP+TK S+ PH
Sbjct:   16 DWQERVVQIRRVTKVVKGGKKLSFRAILIIGNEKGEVGVGVGKASDVIGAVKKAVSDGKKKIVSVPITKDSSIPH 90
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/Swiss-Prot
Match: Small (ribosomal subunit protein uS5c OS=Guillardia theta OX=55529 GN=rps5 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.220e-24
Identity = 39/75 (52.00%), Postives = 63/75 (84.00%), Query Frame = 0 
Query:   59 EFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPH 133
            +++ERV+QVRRVTKVVKGGK+L FRA++ +G+++GQVGVGV KA +V+  V+K+ ++ R+N++ +P+T  ++ PH
Sbjct:   16 DWQERVIQVRRVTKVVKGGKKLSFRAIIILGNERGQVGVGVGKASDVIGAVKKAVTDGRKNLINIPLTNQNSIPH 90
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/Swiss-Prot
Match: Small (ribosomal subunit protein uS5c OS=Cyanophora paradoxa OX=2762 GN=rps5 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.552e-23
Identity = 39/75 (52.00%), Postives = 66/75 (88.00%), Query Frame = 0 
Query:   59 EFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPH 133
            +++ERVVQ+RRV+KVVKGGK+L FRA+V +G+++GQVGVG+ KA +V+  V+K+A++ ++++V+VP+T+ ++ PH
Sbjct:   16 DWQERVVQIRRVSKVVKGGKKLSFRAIVVIGNERGQVGVGIGKASDVINAVKKAAADGKKHVVEVPLTRSNSIPH 90
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/Swiss-Prot
Match: Small (ribosomal subunit protein uS5c OS=Emiliania huxleyi OX=2903 GN=rps5 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.789e-23
Identity = 43/77 (55.84%), Postives = 62/77 (80.52%), Query Frame = 0 
Query:   59 EFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHRM 135
            E+EERVV V+RVTKVVKGGK+L FRAVV VGD++G+VGVGV KA +V   V+K  ++ ++N++ VP+T  ++ PH++
Sbjct:   16 EWEERVVSVQRVTKVVKGGKKLSFRAVVVVGDQQGKVGVGVGKASDVSTAVRKGVTDGKKNVITVPLTSSNSIPHKI 92
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/Swiss-Prot
Match: Small (ribosomal subunit protein uS5 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpsE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.290e-23
Identity = 42/75 (56.00%), Postives = 62/75 (82.67%), Query Frame = 0 
Query:   59 EFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPH 133
            E++ERVVQ+RRVTKVVKGGK+L FRA+V VG+++GQVGVGV KA +V+  V+K  ++ ++++V VP+T+  + PH
Sbjct:   24 EWQERVVQIRRVTKVVKGGKKLSFRAIVIVGNERGQVGVGVGKASDVIGAVRKGVADGKKHLVNVPLTRDQSIPH 98
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/Swiss-Prot
Match: Small (ribosomal subunit protein uS5 OS=Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805) OX=1140 GN=rpsE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.290e-23
Identity = 42/75 (56.00%), Postives = 62/75 (82.67%), Query Frame = 0 
Query:   59 EFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPH 133
            E++ERVVQ+RRVTKVVKGGK+L FRA+V VG+++GQVGVGV KA +V+  V+K  ++ ++++V VP+T+  + PH
Sbjct:   24 EWQERVVQIRRVTKVVKGGKKLSFRAIVIVGNERGQVGVGVGKASDVIGAVRKGVADGKKHLVNVPLTRDQSIPH 98
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/Swiss-Prot
Match: Small (ribosomal subunit protein uS5c OS=Gracilaria tenuistipitata var. liui OX=285951 GN=rps5 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.423e-22
Identity = 40/76 (52.63%), Postives = 63/76 (82.89%), Query Frame = 0 
Query:   58 DEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPH 133
            + +EE+VVQV+RVTKVVKGGK+L FRA++ VG++KG++GVG+ KA +V+  V+K  ++A+++I+ VP+TK  + PH
Sbjct:   13 NNWEEKVVQVKRVTKVVKGGKKLSFRAILIVGNEKGEIGVGIGKASDVIGAVKKGVTDAKKHIINVPLTKSYSIPH 88
[Close]
BLAST of Va03G037710.1 vs. UniProtKB/Swiss-Prot
Match: Small (ribosomal subunit protein uS5 OS=Synechococcus sp. (strain CC9902) OX=316279 GN=rpsE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.642e-22
Identity = 41/74 (55.41%), Postives = 63/74 (85.14%), Query Frame = 0 
Query:   59 EFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFP 132
            E++ERVVQ+RRV+K VKGGK++ FRA+V VG++KGQVGVGV KA +V+  V+K  ++ ++++VKVP+T++S+ P
Sbjct:   58 EWQERVVQIRRVSKTVKGGKKMSFRAIVVVGNEKGQVGVGVGKAGDVIGAVRKGVADGKKHLVKVPLTRHSSIP 131
[Close]
BLAST of Va03G037710.1 vs. Araport11
Match: | (Symbols: SCA1, RPS5, EMB3113, PRPS5 | plastid ribosomal protein of the 30S subunit 5, EMBRYO DEFECTIVE 3113, ribosomal protein S5, SCABRA 1 | chr2:14300925-14302352 REVERSE LENGTH=303)

HSP 1 Score: 137.502 bits (345), Expect = 1.471e-39
Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 0 
Query:   43 QNTGFGSGTKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVSKAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHR 134
            +++G G   KK K+ D FEERVVQVRRVTKVVKGGKQL FRA+V VGDK+G VGVG +KAKEVV  VQKSA +ARRNIV+VPMTKYSTFPHR
Sbjct:  130 KSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHR 221
The following BLAST results are available for this feature:
BLAST of Va03G037710.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A0L9U4R6|A0A0L9U4R6_PHAAN5.977e-141100.00S5 DRBM domain-containing protein OS=Phaseolus ang... [more]
tr|A0A0S3QZI0|A0A0S3QZI0_PHAAN2.371e-4586.60S5 DRBM domain-containing protein OS=Vigna angular... [more]
tr|A0A0L9TKB8|A0A0L9TKB8_PHAAN2.371e-4586.6030S ribosomal protein OS=Phaseolus angularis OX=39... [more]
tr|A0A1S3UVV2|A0A1S3UVV2_VIGRR7.591e-4585.5730S ribosomal protein S5, chloroplastic OS=Vigna r... [more]
tr|A0A4D6L779|A0A4D6L779_VIGUN1.037e-4485.57Small subunit ribosomal protein S5 OS=Vigna unguic... [more]
tr|A0A151UAJ5|A0A151UAJ5_CAJCA1.548e-4382.47S5 DRBM domain-containing protein OS=Cajanus cajan... [more]
tr|A0A8T0KS28|A0A8T0KS28_PHAAN1.947e-4374.7730S ribosomal protein OS=Phaseolus angularis OX=39... [more]
tr|A0A445I6A7|A0A445I6A7_GLYSO2.978e-4381.4430S ribosomal protein S5, chloroplastic OS=Glycine... [more]
tr|I1M091|I1M091_SOYBN2.978e-4381.44S5 DRBM domain-containing protein OS=Glycine max O... [more]
tr|V7CQX3|V7CQX3_PHAVU1.288e-4280.41S5 DRBM domain-containing protein OS=Phaseolus vul... [more]
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BLAST of Va03G037710.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
Small7.085e-3971.13ribosomal subunit protein uS5c OS=Spinacia olerace... [more]
Small1.423e-3875.00ribosomal subunit protein uS5c OS=Arabidopsis thal... [more]
Small6.403e-2457.33ribosomal subunit protein uS5c OS=Rhodomonas salin... [more]
Small8.220e-2452.00ribosomal subunit protein uS5c OS=Guillardia theta... [more]
Small2.552e-2352.00ribosomal subunit protein uS5c OS=Cyanophora parad... [more]
Small2.789e-2355.84ribosomal subunit protein uS5c OS=Emiliania huxley... [more]
Small7.290e-2356.00ribosomal subunit protein uS5 OS=Synechococcus sp.... [more]
Small7.290e-2356.00ribosomal subunit protein uS5 OS=Synechococcus elo... [more]
Small1.423e-2252.63ribosomal subunit protein uS5c OS=Gracilaria tenui... [more]
Small1.642e-2255.41ribosomal subunit protein uS5 OS=Synechococcus sp.... [more]
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BLAST of Va03G037710.1 vs. Araport11
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
|1.471e-3975.00Symbols: SCA1, RPS5, EMB3113, PRPS5 | plastid rib... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna angularis cv. Jingnong6 genome v1.7.1
Date Performed: 2024-05-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.160.20coord: 57..122
e-value: 6.3E-20
score: 72.8
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 56..125
IPR013810Small ribosomal subunit protein uS5, N-terminalPFAMPF00333Ribosomal_S5coord: 60..124
e-value: 8.9E-17
score: 72.2
IPR013810Small ribosomal subunit protein uS5, N-terminalPROSITEPS50881S5_DSRBDcoord: 60..123
score: 23.227303
IPR000851Small ribosomal subunit protein uS5PANTHERPTHR13718RIBOSOMAL S SUBUNITcoord: 53..137

Sequences
The following sequences are available for this feature:

mRNA sequence

>Va03G037710.1_Jingnong6 ID=Va03G037710.1_Jingnong6; Name=Va03G037710.1; organism=Vigna angularis; type=mRNA; length=597bp
ATGGTGGCCATTTTTTCACACTTCCCGCTTCTCTCTCCTGCCTTCGCCGT
CGCACACCGTCTCCCTCCTCTTCGCCAAACCCCAACACCACCCTTCCCTC
CTCTGCGACACGAGGTTCGGGTCTGGCAAAACACAGGGTTCGGATCCGGC
ACGAAGAAGGCGAAGGTCTGTGATGAGTTCGAAGAGAGGGTGGTCCAGGT
GAGGAGGGTGACGAAGGTTGTTAAGGGAGGGAAGCAGTTGTTCTTCAGAG
CTGTCGTCACTGTCGGCGACAAGAAGGGTCAAGTCGGCGTCGGAGTTAGC
AAGGCCAAGGAAGTCGTCGTCGTCGTTCAGAAGTCCGCCTCCAATGCCAG
GAGGAACATCGTGAAGGTGCCAATGACTAAGTACTCCACTTTTCCCCACA
GAATGGGAGTTCAGCAAAAGCTCATTTCTTTCTTCTTTCATTCTTCTCTT
GTATTCATCATGTTTCCCCTTGTTGGTTCATCACAAGAGCACCAGAAAAT
TACAAGCAGCCCTTCAAGAACCAAAGATAATAACCACATTAAGATGAGTC
CAAGACTATCAAACAAAGAGCCTGTGGGCTTCGAATGGGGTTCTTGA
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protein sequence of Va03G037710.1_Jingnong6

>Va03G037710.1_Jingnong6 ID=Va03G037710.1_Jingnong6; Name=Va03G037710.1_Jingnong6; organism=Vigna angularis; type=polypeptide; length=198bp
MVAIFSHFPLLSPAFAVAHRLPPLRQTPTPPFPPLRHEVRVWQNTGFGSG
TKKAKVCDEFEERVVQVRRVTKVVKGGKQLFFRAVVTVGDKKGQVGVGVS
KAKEVVVVVQKSASNARRNIVKVPMTKYSTFPHRMGVQQKLISFFFHSSL
VFIMFPLVGSSQEHQKITSSPSRTKDNNHIKMSPRLSNKEPVGFEWGS
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mRNA from alignment at Chr3:21253648..21254847+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Va03G037710.1_Jingnong6 ID=Va03G037710.1_Jingnong6; Name=Va03G037710.1; organism=Vigna angularis; type=mRNA; length=1200bp; location=Sequence derived from: Chr3:21253648..21254847+ (Vigna angularis
ATGGTGGCCATTTTTTCACACTTCCCGCTTCTCTCTCCTGCCTTCGCCGT
CGCACACCGTCTCCCTCCTCTTCGCCAAACCCCAACACCACCCTTCCCTC
CTCTGCGTCAAATGAAAACCCTCTGATGACATCGACACCTCGTTCTTTGA
CAACATCAACCCCCTAGAGCCTCCTGAGGGATTTCTCTCAGCCTATGTGG
AGCTCTACGGCCTCGTCTTCAGCGGCGTTTCCATGCTCGGGAATGACATC
TTCGAAACAGATTCCATGGTGAAGCAGGACACGAGGTTCGGGTCTGGCAA
AACACAGGGTTCGGATCCGGCACGAAGAAGGCGAAGGTCTGTGATGAGTT
CGAAGAGAGGGTGGTCCAGGTGAGGAGGGTGACGAAGGTTGTTAAGGGAG
GGAAGCAGTTGTTCTTCAGAGCTGTCGTCACTGTCGGCGACAAGAAGGGT
CAAGTCGGCGTCGGAGTTAGCAAGGCCAAGGAAGTCGTCGTCGTCGTTCA
GAAGTCCGCCTCCAATGCCAGGAGGAACATCGTGAAGGTGCCAATGACTA
AGTACTCCACTTTTCCCCACAGGTACTTTCTCGAACTTATGTTACCCTAC
ACTGTATTTCTGAACTGTTTGTTTTGGTCACCCATTTATGCTGTTATGAT
AATCTGCAAGTGTCTTTTGAATCCAGGATTGAATCGATGAGGTTTGTTAT
AATTAATTATGAAATAAAAATGAAATTGACTTTGCATATGTATGAGTTAA
AAGTAAAAATTTGGAATTGGAGTCTGAGATTGAGATTGAGTTTGAGTTTG
CACTTGGAAGAATGGGAGTTCAGCAAAAGCTCATTTCTTTCTTCTTTCAT
TCTTCTCTTGTATTCATCATGTTTCCCCTTGTTGGTTCATCACAAGAGCA
CCAGAAAATTACAAGCAGCCCTTCAAGAACCAAAGATAATAACCACATTA
AGGTAGGGTATTTCATCAAATTCCATGTTATGAACTTTTATTCAAGAAAG
TTAGCAGCATAATCTATTCATTTTTCCCTCTTGCCTAATTTCCAATCTTG
CAAGTTAAATCCTTTGTTTATTAAATTAAATCCTTTATTTATTAAATGTG
AGTTTTGTCTCTGAAGCTAACTCTTTTTCTTCTGTGATTGGTTAAGATGA
GTCCAAGACTATCAAACAAAGAGCCTGTGGGCTTCGAATGGGGTTCTTGA
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Coding sequence (CDS) from alignment at Chr3:21253648..21254847+

>Va03G037710.1_Jingnong6 ID=Va03G037710.1_Jingnong6; Name=Va03G037710.1; organism=Vigna angularis; type=CDS; length=597bp; location=Sequence derived from: Chr3:21253648..21254847+ (Vigna angularis
ATGGTGGCCATTTTTTCACACTTCCCGCTTCTCTCTCCTGCCTTCGCCGT
CGCACACCGTCTCCCTCCTCTTCGCCAAACCCCAACACCACCCTTCCCTC
CTCTGCGACACGAGGTTCGGGTCTGGCAAAACACAGGGTTCGGATCCGGC
ACGAAGAAGGCGAAGGTCTGTGATGAGTTCGAAGAGAGGGTGGTCCAGGT
GAGGAGGGTGACGAAGGTTGTTAAGGGAGGGAAGCAGTTGTTCTTCAGAG
CTGTCGTCACTGTCGGCGACAAGAAGGGTCAAGTCGGCGTCGGAGTTAGC
AAGGCCAAGGAAGTCGTCGTCGTCGTTCAGAAGTCCGCCTCCAATGCCAG
GAGGAACATCGTGAAGGTGCCAATGACTAAGTACTCCACTTTTCCCCACA
GAATGGGAGTTCAGCAAAAGCTCATTTCTTTCTTCTTTCATTCTTCTCTT
GTATTCATCATGTTTCCCCTTGTTGGTTCATCACAAGAGCACCAGAAAAT
TACAAGCAGCCCTTCAAGAACCAAAGATAATAACCACATTAAGATGAGTC
CAAGACTATCAAACAAAGAGCCTGTGGGCTTCGAATGGGGTTCTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013810Ribosomal_uS5_N
IPR000851Ribosomal_uS5
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation