Va03G068160.2

Transcript Overview


Name	Va03G068160.2
Unique Name	Va03G068160.2_Jingnong6
Type	mRNA
Organism	Vigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length	621

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr3	chromosome	Chr3:41012780..41014953 -	Vigna angularis cv. Jingnong6 genome v1.7.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna angularis cv. Jingnong6 genome v1.7.1	2024-05-08
InterProScan Analysis for Vigna angularis cv. Jingnong6 genome v1.7.1	2024-05-23
Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt TrEMBL	2024-05-23
Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt Swissprot	2024-05-23
Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs arabidopsis Araport11	2024-05-23

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
avjavjL087	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjavjL223	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjcanR379	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjcaR418	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
avjcaR439	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
avjcanR408	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjcaR469	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
avjccR0757	Cajanus cajan Asha genome v1.0	Cajanus cajan
avjccR0778	Cajanus cajan Asha genome v1.0	Cajanus cajan
avjccR0786	Cajanus cajan Asha genome v1.0	Cajanus cajan
avjpsR431	Pisum sativum Cameor genome v1a	Pisum sativum
avjpsR466	Pisum sativum Cameor genome v1a	Pisum sativum
avjpsR472	Pisum sativum Cameor genome v1a	Pisum sativum
avjpsR502	Pisum sativum Cameor genome v1a	Pisum sativum
avjpvR452	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
avjvfhR457	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
avjvfhR491	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
avjpvR507	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
avjpvR509	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
avjvfhR515	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
avjvrvR345	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
avjvrvR398	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
avjvuR337	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
avjvuR388	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
avjvssR481	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
avjvuR404	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
avjvssR550	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
avjvssR571	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
avjcarR417		Cicer arietinum
avjcarR445		Cicer arietinum
avjvumR379	Vigna umbellata FF25 genome v1.0	Vigna umbellata
avjccaR442	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
avjccaR450	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
avjvumR424	Vigna umbellata FF25 genome v1.0	Vigna umbellata
avjvumR435	Vigna umbellata FF25 genome v1.0	Vigna umbellata
avjccaR491	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
avjvvaR439	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
avjvvaR465	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
avjvvaR513	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
avjvasR379	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
avjvasR385	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
avjvasR410	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
avjvstR397	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
avjvstR409	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
avjvstR421	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
avjvunR282	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
avjpvfR450	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
avjvunR340	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
avjpvfR503	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
avjpvfR506	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Vigun01g129800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
rna-XM_014639932.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vigun01g129800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
PvulFLAVERTChr01.1001029	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vigst.04G185300.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
rna-KK1_009893	Cajanus cajan Asha genome v1.0	Cajanus cajan
Cc_v2.0_07466.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Phvul.001G147600.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Vum_04G02092.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Vigan.04G294000.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Va03G068160	Va03G068160_Jingnong6	Vigna angularis	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Va03G068160.2:three_prime_UTR_1_Jingnong6	Va03G068160.2:three_prime_UTR_1_Jingnong6	Vigna angularis	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Va03G068160.2:exon_1_Jingnong6	Va03G068160.2:exon_1_Jingnong6	Vigna angularis	exon
Va03G068160.2:exon_2_Jingnong6	Va03G068160.2:exon_2_Jingnong6	Vigna angularis	exon
Va03G068160.2:exon_3_Jingnong6	Va03G068160.2:exon_3_Jingnong6	Vigna angularis	exon
Va03G068160.2:exon_4_Jingnong6	Va03G068160.2:exon_4_Jingnong6	Vigna angularis	exon
Va03G068160.2:exon_5_Jingnong6	Va03G068160.2:exon_5_Jingnong6	Vigna angularis	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Va03G068160.2_Jingnong6-cds	Va03G068160.2_Jingnong6-cds-Chr3_Jingnong6:41013054..41013506	Vigna angularis	CDS
Va03G068160.2_Jingnong6-cds	Va03G068160.2_Jingnong6-cds-Chr3_Jingnong6:41013852..41013917	Vigna angularis	CDS
Va03G068160.2_Jingnong6-cds	Va03G068160.2_Jingnong6-cds-Chr3_Jingnong6:41014013..41014078	Vigna angularis	CDS
Va03G068160.2_Jingnong6-cds	Va03G068160.2_Jingnong6-cds-Chr3_Jingnong6:41014286..41014321	Vigna angularis	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Va03G068160.2:five_prime_UTR_1_Jingnong6	Va03G068160.2:five_prime_UTR_1_Jingnong6	Vigna angularis	five_prime_UTR
Va03G068160.2:five_prime_UTR_2_Jingnong6	Va03G068160.2:five_prime_UTR_2_Jingnong6	Vigna angularis	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Va03G068160.2_Jingnong6	Va03G068160.2_Jingnong6	Vigna angularis	polypeptide
Va03G068160.2_Jingnong6	Va03G068160.2_Jingnong6-protein	Vigna angularis	polypeptide

Homology

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RXS3|A0A0S3RXS3_PHAAN (K Homology domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G294000 PE=4 SV=1)

HSP 1 Score: 429.483 bits (1103), Expect = 3.171e-150
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR
Sbjct:  120 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 325

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9U890|A0A0L9U890_PHAAN (Exosome complex component RRP4-like protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0050180 PE=4 SV=1)

HSP 1 Score: 429.483 bits (1103), Expect = 3.171e-150
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR
Sbjct:  120 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 325

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TNQ7|A0A1S3TNQ7_VIGRR (Exosome complex component RRP4 homolog OS=Vigna radiata var. radiata OX=3916 GN=LOC106757294 PE=4 SV=1)

HSP 1 Score: 423.705 bits (1088), Expect = 5.588e-148
Identity = 203/206 (98.54%), Postives = 205/206 (99.51%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDP VLLHNS+SLEEQEKNYTILEIRKYICRAANAVRVLSILGFN+TLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR
Sbjct:  120 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPQVLLHNSSSLEEQEKNYTILEIRKYICRAANAVRVLSILGFNITLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 325

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MCR4|A0A4D6MCR4_VIGUN (Exosome complex component RRP4 OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2294 PE=4 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 5.447e-146
Identity = 200/206 (97.09%), Postives = 203/206 (98.54%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKL RGQLLTVPPYLVKRQKQHFHHLEEFG+DLILGCNGFIWVGEHIEAKDDMVEDQVSQSDP VLLHNSASLEEQE+NYTILE RKYICRAANAVRVLSILGFN+TLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR
Sbjct:  120 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLYRGQLLTVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPQVLLHNSASLEEQERNYTILETRKYICRAANAVRVLSILGFNITLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 325

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|V7CW81|V7CW81_PHAVU (RNA-binding domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G147600g PE=4 SV=1)

HSP 1 Score: 414.846 bits (1065), Expect = 2.092e-144
Identity = 197/206 (95.63%), Postives = 202/206 (98.06%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLL+VPPYLVKRQKQHFHHLEEFG+DLI+GCNGFIWVGEHIEAKDDMVEDQVSQSDP VLLHNS SLEEQE+NYTILE RKYICRAANAVRVLSIL FN+TLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR
Sbjct:  120 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLSVPPYLVKRQKQHFHHLEEFGIDLIIGCNGFIWVGEHIEAKDDMVEDQVSQSDPQVLLHNSVSLEEQERNYTILETRKYICRAANAVRVLSILSFNMTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 325

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A151TUE4|A0A151TUE4_CAJCA (Exosome complex exonuclease RRP4 OS=Cajanus cajan OX=3821 GN=KK1_009893 PE=4 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 2.818e-136
Identity = 189/208 (90.87%), Postives = 197/208 (94.71%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLL--HNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRTA+DELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKL RGQLL V PYLVKRQKQHFHHLEEFG+DLILGCNGFIWVGEHIEAKDDMVEDQV+QSDP VLL   NS SLEEQEK+YT LE RKYICRAANA+RVLS LGFN+TLEIIKGIIDLSLS+NLDIH+MLGSEFCVLVAEKEAERRSSNKKKR
Sbjct:  124 MLSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLTRGQLLRVSPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHIEAKDDMVEDQVNQSDPQVLLPSKNSVSLEEQEKSYTTLETRKYICRAANAIRVLSTLGFNITLEIIKGIIDLSLSLNLDIHDMLGSEFCVLVAEKEAERRSSNKKKR 331

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8L8N9|A0A8B8L8N9_ABRPR (Exosome complex component RRP4 homolog OS=Abrus precatorius OX=3816 GN=LOC113863265 PE=4 SV=1)

HSP 1 Score: 393.66 bits (1010), Expect = 3.885e-136
Identity = 188/208 (90.38%), Postives = 198/208 (95.19%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLL--HNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRTA+DELNMRCIFEE DVVCAEVRGFQHDGLHLQARS+KYGKLNRGQLLTVPPYLVKRQKQHFHHLE++G+DLILGCNGFIWVGEHIEAKDD+VEDQV+QSD  VLL   NS+SLEEQEKNYT LE RKYICRAANAVRVLS LGFN+TLEIIKGIIDLSLS+NLDIHEMLGSEFCVLVAEKE ERRSSNKKKR
Sbjct:  120 MLSSMNMPDGVQRRRTAVDELNMRCIFEEKDVVCAEVRGFQHDGLHLQARSQKYGKLNRGQLLTVPPYLVKRQKQHFHHLEQYGIDLILGCNGFIWVGEHIEAKDDLVEDQVNQSDHQVLLPNKNSSSLEEQEKNYTTLETRKYICRAANAVRVLSTLGFNITLEIIKGIIDLSLSLNLDIHEMLGSEFCVLVAEKETERRSSNKKKR 327

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|I1N9E1|I1N9E1_SOYBN (RNA-binding domain-containing protein OS=Glycine max OX=3847 GN=100776358 PE=4 SV=2)

HSP 1 Score: 392.119 bits (1006), Expect = 2.168e-135
Identity = 188/208 (90.38%), Postives = 196/208 (94.23%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLL--HNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            +LSSMNMPDGVQRRRTA+DELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFG+DLILGCNGFIWVGEH+EAKDDM+EDQVSQSD  VL    N  SLEEQEKNYTILE RKYI RAANAVRVLS LGFN+TLEIIKGIIDLSLSMNLDIH+MLGSEFCVLVAEKEAERRSS KK+R
Sbjct:  120 LLSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHVEAKDDMIEDQVSQSDSQVLFPNKNCVSLEEQEKNYTILETRKYISRAANAVRVLSTLGFNITLEIIKGIIDLSLSMNLDIHDMLGSEFCVLVAEKEAERRSSMKKRR 327

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2SKI4|A0A0B2SKI4_GLYSO (Exosome complex component RRP4 OS=Glycine soja OX=3848 GN=D0Y65_051561 PE=4 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 2.168e-135
Identity = 188/208 (90.38%), Postives = 196/208 (94.23%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLL--HNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            +LSSMNMPDGVQRRRTA+DELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFG+DLILGCNGFIWVGEH+EAKDDM+EDQVSQSD  VL    N  SLEEQEKNYTILE RKYI RAANAVRVLS LGFN+TLEIIKGIIDLSLSMNLDIH+MLGSEFCVLVAEKEAERRSS KK+R
Sbjct:  120 LLSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHVEAKDDMIEDQVSQSDSQVLFPNKNCVSLEEQEKNYTILETRKYISRAANAVRVLSTLGFNITLEIIKGIIDLSLSMNLDIHDMLGSEFCVLVAEKEAERRSSMKKRR 327

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A371FTU5|A0A371FTU5_MUCPR (Exosome complex component RRP4-like protein OS=Mucuna pruriens OX=157652 GN=RRP4 PE=4 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 2.421e-132
Identity = 183/208 (87.98%), Postives = 195/208 (93.75%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVL--LHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRT++DELNMRCIFEE DVVCAEVRGFQHDGLHLQARS KYGKL+RGQLLT+PPYLVKRQKQHFHHLEEFG+DL+LGCNGFIWVGEH EAKDDM+EDQV+QSD  VL    N ASLEEQEKNYT L+ RKYICRAANA+RVLS LGFN+TLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSS+KKKR
Sbjct:  120 MLSSMNMPDGVQRRRTSVDELNMRCIFEETDVVCAEVRGFQHDGLHLQARSWKYGKLSRGQLLTIPPYLVKRQKQHFHHLEEFGIDLVLGCNGFIWVGEHTEAKDDMLEDQVNQSDLQVLSPSKNCASLEEQEKNYTTLDTRKYICRAANAIRVLSTLGFNITLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSSKKKR 327

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Match: Exosome (complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.228e-88
Identity = 132/206 (64.08%), Postives = 161/206 (78.16%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKK 205
            MLSSMNMPDG+QRRRT++DELNMR IF E+DVVCAEVR FQHDG L LQARS+KYGKL +GQLL V PYLVKR K HFH++E  G+DLI+GCNGFIWVGEH+E +D M  D   Q D  ++   S+S   +E+++  LE R+ ICR  NA+RVLS LGF VTLE+I   ++LS S N+DIH+MLGSEF V+VAE EAERR + +KK
Sbjct:  122 MLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAID--DQKDEEMI---SSSSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNIDIHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Match: Exosome (complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.025e-28
Identity = 74/190 (38.95%), Postives = 103/190 (54.21%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMV-----EDQVSQSDPPVLLHNSASLEEQEKNYTILEI-RKYICRAANAVRVL-----SILGFNVTLEIIKGIIDLSLSMNLD 178
            MLSS+N+P G+QRR+   DEL MR  F+E D++ AEV+ +  DG + +  RS KYGKL  G  L VPP LV R K H + L   GVD+IL  NG++WV +H E +   V     E++ S+S    +  N     ++   YT L I R  IC    A R L     SI  F  +  +   + DL++  N+D
Sbjct:  140 MLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTRSLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKHNENQHSSVSITRLEEEASES----IYSNE---NDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYESSLVFSNLQDLTVPKNMD 321

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Match: Exosome (complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.805e-27
Identity = 59/118 (50.00%), Postives = 74/118 (62.71%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDP 117
            +LSSMN+P G  RRR+A DEL MR   +E D++ AEV+    DG + L  RS KYGKL +G L+ V P LVKRQK HFH L   G  +ILG NGFIWV    E K+D     ++  +P
Sbjct:  109 LLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWVYPTPEHKEDDAGGFIANLEP 225

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Match: Exosome (complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.318e-27
Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVL 120
            +LSSMN+P G  RRR+A DEL MR   +E D++ AEV+    DG + L  RS KYGKL +G L+ V P LVKRQK HFH L   G  +ILG NGFIW+    E KD+     ++  +P  L
Sbjct:  109 LLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWIYPTPEHKDEDAGGFIANLEPVAL 228

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Match: Exosome (complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.602e-26
Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDP 117
            +LSSMN+P G  RRR+A DEL MR   +E D++ AEV+    DG + L  RS KYGKL +G L+ V P LVKRQK HFH L   G  +ILG NGFIW+    E K++     ++  +P
Sbjct:  109 LLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEP 225

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Match: Exosome (complex component RRP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.393e-23
Identity = 72/222 (32.43%), Postives = 112/222 (50.45%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRG-FQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVS-------QSDPP---VLLHNSASLEEQEKNYTILE----------IRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLS-------MNLDIHEMLGSEFCVLVAEK 194
            ML S+N+P G+ RR++  DEL MR   +E D++ AEV+  FQ     L  RS KYGKL  G    VP  L+ R K H H+L    + ++LG NG+IW+ +   ++ D+  D  S       +S  P   V L+ S +  E+E ++ I            IR+ ICR AN ++ L+     +T + I    + S+        +  ++ E +GS+  +L AEK
Sbjct:  137 MLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPG-NITVVLGVNGYIWLRK--TSQMDLARDTPSANNSSSIKSTGPTGAVSLNPSITRLEEESSWQIYSDENDPSISNNIRQAICRYANVIKALAFCEIGITQQRIVSAYEASMVYSNVGELIEKNVMESIGSD--ILTAEK 353

[Close]

BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Match: Exosome (complex component RRP4 homolog OS=Caenorhabditis elegans OX=6239 GN=exos-2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.223e-22
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 0

Query:    2 LSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWV 97
            L S+ +P G  RR+   DE  M    +  +++CAEV+  QHDG L L  R+ KYGKL +G L+ VPP+L+K+ K+HFH L  +G+ +I+GCNG +WV
Sbjct:  116 LGSVLLPGGDFRRKDVEDEEKMSEFLKNGELICAEVQQVQHDGTLMLHTRNNKYGKLQQGILIKVPPHLIKKSKKHFHTL-PYGMAVIIGCNGSVWV 211

[Close]

BLAST of Va03G068160.2 vs. Araport11
Match: | (Symbols: SOP2, RRP4, ATRRP4 | ribosomal RNA processing 4, SUPPRESSOR OF PAS2 2 | chr1:824653-826179 FORWARD LENGTH=322)

HSP 1 Score: 256.914 bits (655), Expect = 7.721e-86
Identity = 128/198 (64.65%), Postives = 155/198 (78.28%), Query Frame = 0

Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAE 197
            MLSSMNMPDG+QRRRT++DELNMR IF E+DVVCAEVR FQHDG L LQARS+KYGKL +GQLL V PYLVKR K HFH++E  G+DLI+GCNGFIWVGEH+E +D M  D   Q D  ++   S+S   +E+++  LE R+ ICR  NA+RVLS LGF VTLE+I   ++LS S N+DIH+MLGSEF V+VAE EAE
Sbjct:  122 MLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAID--DQKDEEMI---SSSSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNIDIHDMLGSEFHVVVAENEAE 314

The following BLAST results are available for this feature:

BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
BLAST of Va03G068160.2 vs. Araport11

BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
tr\|A0A0S3RXS3\|A0A0S3RXS3_PHAAN	3.171e-150	100.00	K Homology domain-containing protein OS=Vigna angu...	[more]
tr\|A0A0L9U890\|A0A0L9U890_PHAAN	3.171e-150	100.00	Exosome complex component RRP4-like protein OS=Pha...	[more]
tr\|A0A1S3TNQ7\|A0A1S3TNQ7_VIGRR	5.588e-148	98.54	Exosome complex component RRP4 homolog OS=Vigna ra...	[more]
tr\|A0A4D6MCR4\|A0A4D6MCR4_VIGUN	5.447e-146	97.09	Exosome complex component RRP4 OS=Vigna unguiculat...	[more]
tr\|V7CW81\|V7CW81_PHAVU	2.092e-144	95.63	RNA-binding domain-containing protein OS=Phaseolus...	[more]
tr\|A0A151TUE4\|A0A151TUE4_CAJCA	2.818e-136	90.87	Exosome complex exonuclease RRP4 OS=Cajanus cajan ...	[more]
tr\|A0A8B8L8N9\|A0A8B8L8N9_ABRPR	3.885e-136	90.38	Exosome complex component RRP4 homolog OS=Abrus pr...	[more]
tr\|I1N9E1\|I1N9E1_SOYBN	2.168e-135	90.38	RNA-binding domain-containing protein OS=Glycine m...	[more]
tr\|A0A0B2SKI4\|A0A0B2SKI4_GLYSO	2.168e-135	90.38	Exosome complex component RRP4 OS=Glycine soja OX=...	[more]
tr\|A0A371FTU5\|A0A371FTU5_MUCPR	2.421e-132	87.98	Exosome complex component RRP4-like protein OS=Muc...	[more]

BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt Swissprot)
Total hits: 7

Position :

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Match Name	E-value	Identity	Description
Exosome	2.228e-88	64.08	complex component RRP4 homolog OS=Arabidopsis thal...	[more]
Exosome	3.025e-28	38.95	complex component rrp4 OS=Schizosaccharomyces pomb...	[more]
Exosome	2.805e-27	50.00	complex component RRP4 OS=Bos taurus OX=9913 GN=EX...	[more]
Exosome	3.318e-27	48.76	complex component RRP4 OS=Mus musculus OX=10090 GN...	[more]
Exosome	1.602e-26	48.31	complex component RRP4 OS=Homo sapiens OX=9606 GN=...	[more]
Exosome	1.393e-23	32.43	complex component RRP4 OS=Saccharomyces cerevisiae...	[more]
Exosome	6.223e-22	46.39	complex component RRP4 homolog OS=Caenorhabditis e...	[more]

BLAST of Va03G068160.2 vs. Araport11
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs arabidopsis Araport11)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
\|	7.721e-86	64.65	Symbols: SOP2, RRP4, ATRRP4 \| ribosomal RNA proces...	[more]

InterPro

Analysis Name: InterProScan Analysis for Vigna angularis cv. Jingnong6 genome v1.7.1
Date Performed: 2024-05-23

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 60..100 e-value: 5.8E-10 score: 50.7
IPR048565	RRP4, S1 domain	PFAM	PF21266	RRP4_S1	coord: 1..38 e-value: 5.6E-10 score: 50.6
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 2..175
None	No IPR available	CDD	cd22525	KH-I_Rrp4_eukar	coord: 60..196 e-value: 2.65103E-37 score: 124.304
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..57
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 60..201

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr3:41012780..41014953-
coding sequence from alignment at Chr3:41012780..41014953-

mRNA sequence

>Va03G068160.2_Jingnong6 ID=Va03G068160.2_Jingnong6; Name=Va03G068160.2; organism=Vigna angularis; type=mRNA; length=621bp
ATGCTTTCTTCCATGAATATGCCTGATGGGGTCCAGAGGCGGAGGACAGC
GCTGGATGAGCTAAACATGCGTTGCATTTTTGAGGAGAATGATGTTGTCT
GTGCTGAAGTTCGGGGTTTCCAGCATGACGGCTTACACCTTCAAGCTAGG
AGTCGGAAATATGGAAAGCTTAATAGAGGTCAGCTGCTTACAGTCCCACC
TTATCTAGTGAAGAGACAGAAACAACATTTCCATCATCTGGAGGAGTTTG
GCGTCGATTTGATACTTGGCTGTAACGGATTCATATGGGTTGGGGAACAT
ATTGAAGCCAAAGATGACATGGTAGAAGATCAGGTGAGCCAATCCGATCC
ACCAGTTTTACTGCATAACAGTGCAAGTCTTGAAGAACAAGAAAAAAATT
ATACGATATTGGAGATCAGAAAATATATTTGCAGAGCAGCTAATGCTGTT
AGAGTTCTATCAATCTTAGGCTTCAATGTTACATTGGAAATAATCAAGGG
AATTATTGATCTAAGCCTATCTATGAATCTTGATATACATGAGATGCTTG
GTTCTGAATTCTGTGTTCTGGTTGCTGAAAAAGAGGCAGAAAGGAGGAGC
TCAAATAAAAAGAAGCGGTAG

protein sequence of Va03G068160.2_Jingnong6

>Va03G068160.2_Jingnong6 ID=Va03G068160.2_Jingnong6; Name=Va03G068160.2_Jingnong6; organism=Vigna angularis; type=polypeptide; length=206bp
MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQAR
SRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEH
IEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAV
RVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRS
SNKKKR

mRNA from alignment at Chr3:41012780..41014953-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Va03G068160.2_Jingnong6 ID=Va03G068160.2_Jingnong6; Name=Va03G068160.2; organism=Vigna angularis; type=mRNA; length=2174bp; location=Sequence derived from: Chr3:41012780..41014953- (Vigna angularis
CCAAATTTCAAAGTTTGAAAGAGGGAATGATGGTGGAAGAGTGAGGTTCG
AGCTTAGGGTTTCTTCTTGCATTGTTCAGTGCTTGCAGAGAGAGATATCC
TAATGAGAGGAATACAGTTACCGTTAAGCCAAACTCAGAAGGTTCGTCTT
CAGAAGACTCTTGAACAGTTAGAATCTCTCTCGTCGAAGGTCAATTCCGA
TGCTTCCGTCATCATCGCTGATTCCATTCCCGTCAACCACGAAGACGGAG
TCCTCAAGGGACACGGAACCGCCGATCTCAACGGCGAAGTCGTTGCCACC
GTCTGCGGCGTCGTTGAGCGCGTGAACAAACTTGTCTACGTCCGCGCTTT
ACGCTCCAGGTATAATATTTCTTCTTAACTTGTCAACATTTTTCTGTTGA
TATCTTTGTTAACGGAGTGATGTGATAACTCGTAGGTATAAGCCAGAGGT
TGGTGACATTGTTATAGGACGTGTTGCTGAGGTACATATAAAAAAGATTT
TCTTGGAAATTTGTATTTTGTGCTTGTTGCTGTTCTCTCACTATTTTGAT
TTTAATGGCTGTTATGGCTGTTATGTAGGTTGCTCAGAAGCGCTGGAGAC
TGGATATAAATTTCAATCAGGATGCAGTTTTGATGCTTTCTTCCATGAAT
ATGCCTGATGGGGTCCAGGTATTCATAACGCTTTTTTCGGGGATATATAT
TGATATGGTTTATGTGAAAACATCTGTATTTTGTATAGCTCATATAACTC
TCTTCAGAAAATTTAACTTGTGCCTTTTTAAAATAAAAGGATGTTTTTAG
TTAAGCGAAAATGTGTTTAATTTTATAAATGAAGCTGGAAACCCTCTCAT
TTAGAATTATTCTTATCCGTGCTAGAGGCGGAGGACAGCGCTGGATGAGC
TAAACATGCGTTGCATTTTTGAGGAGAATGATGTTGTCTGTGTAAGTCCC
GTTCTGTGTTTTTACTGAAAATTAATTTCATTGGTTGAAGCAAATGATGG
TTGATTAGTTTTCCTATACTATGTTTGTGACCCCAGGCTGAAGTTCGGGG
TTTCCAGCATGACGGCTTACACCTTCAAGCTAGGAGTCGGAAATATGGAA
AGGTGTGTTGCCTGGAAAATGCTCATAAATCATTTACTTCGTTTTATCTC
GCTTCTCTTTTCATCTCGAAATGTATTAGGCTTGTAGCACATTGTATAAA
GTAGGAGACAGTAGAAAATGAAAACTCTCTATGATATGGGCATTGTTGCT
GACAGATATAGAAGTACATAGGTAGTCTGCTTCCATGTCCCGACTATGGT
TTTCTGATTGAGATACGAGGACAACATTTTGAACTGAGGGTAAATAGTTT
TCTGTGTTCTTAGAAGGTGTTTATAGATGGCTTGAAATAGATTCTAGTTG
TTTCTTCAGTCTTGTACTGTTATTAATGTCTCTTGGTTGTGCAACAGCTT
AATAGAGGTCAGCTGCTTACAGTCCCACCTTATCTAGTGAAGAGACAGAA
ACAACATTTCCATCATCTGGAGGAGTTTGGCGTCGATTTGATACTTGGCT
GTAACGGATTCATATGGGTTGGGGAACATATTGAAGCCAAAGATGACATG
GTAGAAGATCAGGTGAGCCAATCCGATCCACCAGTTTTACTGCATAACAG
TGCAAGTCTTGAAGAACAAGAAAAAAATTATACGATATTGGAGATCAGAA
AATATATTTGCAGAGCAGCTAATGCTGTTAGAGTTCTATCAATCTTAGGC
TTCAATGTTACATTGGAAATAATCAAGGGAATTATTGATCTAAGCCTATC
TATGAATCTTGATATACATGAGATGCTTGGTTCTGAATTCTGTGTTCTGG
TTGCTGAAAAAGAGGCAGAAAGGAGGAGCTCAAATAAAAAGAAGCGGTAG
ATTGTGAAATGGCGGCTTTTTGACCGGGGAGAATTAATTCAGTTTACAAA
ATTGGTTTAATTGTAAAAGAAAATTTTTCCCAAATAGTGTAATGCACGTT
TGAGATTAGCATAGTGTAAAAGTGAATTCATATGTATGAATTATGAAGTG
AATGTTTAAAATGAATTGTCCATGGTTGTGGCCTTTCTTTTCTTTTTAAA
ATATTTGTTTAGGTAGCTAACTTCTAATAATATGAAAGACGAAAGGGAGT
TGTAATCTACCAAATACAGTTTTC

Coding sequence (CDS) from alignment at Chr3:41012780..41014953-

>Va03G068160.2_Jingnong6 ID=Va03G068160.2_Jingnong6; Name=Va03G068160.2; organism=Vigna angularis; type=CDS; length=621bp; location=Sequence derived from: Chr3:41012780..41014953- (Vigna angularis
ATGCTTTCTTCCATGAATATGCCTGATGGGGTCCAGAGGCGGAGGACAGC
GCTGGATGAGCTAAACATGCGTTGCATTTTTGAGGAGAATGATGTTGTCT
GTGCTGAAGTTCGGGGTTTCCAGCATGACGGCTTACACCTTCAAGCTAGG
AGTCGGAAATATGGAAAGCTTAATAGAGGTCAGCTGCTTACAGTCCCACC
TTATCTAGTGAAGAGACAGAAACAACATTTCCATCATCTGGAGGAGTTTG
GCGTCGATTTGATACTTGGCTGTAACGGATTCATATGGGTTGGGGAACAT
ATTGAAGCCAAAGATGACATGGTAGAAGATCAGGTGAGCCAATCCGATCC
ACCAGTTTTACTGCATAACAGTGCAAGTCTTGAAGAACAAGAAAAAAATT
ATACGATATTGGAGATCAGAAAATATATTTGCAGAGCAGCTAATGCTGTT
AGAGTTCTATCAATCTTAGGCTTCAATGTTACATTGGAAATAATCAAGGG
AATTATTGATCTAAGCCTATCTATGAATCTTGATATACATGAGATGCTTG
GTTCTGAATTCTGTGTTCTGGTTGCTGAAAAAGAGGCAGAAAGGAGGAGC
TCAAATAAAAAGAAGCGGTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004088	KH_dom_type_1
IPR048565	RRP4_S1
IPR026699	Exosome_RNA_bind1/RRP40/RRP4
IPR012340	NA-bd_OB-fold
IPR036612	KH_dom_type_1_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000178	exosome (RNase complex)

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