Va07G001680.3

Transcript Overview
NameVa07G001680.3
Unique NameVa07G001680.3_Jingnong6
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length363
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr7chromosomeChr7:790993..792467 -Vigna angularis cv. Jingnong6 genome v1.7.1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anavjL0211Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjcanR656Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjL0692Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anavjL0693Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjcaR725Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
avjcaR727Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
avjccR1190Cajanus cajan Asha genome v1.0Cajanus cajan
anavjL1326Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjpsR715Pisum sativum Cameor genome v1aPisum sativum
avjpsR746Pisum sativum Cameor genome v1aPisum sativum
avjvfhR785Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
avjpvR807Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
avjvrvR603Vigna radiata cv. VC1973A genome v6.0Vigna radiata
avjvuR598Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjvssR902Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjvssR908Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjcarR700Cicer arietinum
avjvumR630Vigna umbellata FF25 genome v1.0Vigna umbellata
avjccaR732Cajanus cajan cv. Asha genome v2.0Cajanus cajan
avjvumR634Vigna umbellata FF25 genome v1.0Vigna umbellata
avjvvaR836Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvasR616Vigna angularis cv. Shumari genome v1.a1Vigna angularis
avjvstR632Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
avjvstR652Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
avjvunR519Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
avjpvfR811Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
avjpvfR816Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigun08g216400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun08g216400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Cc_v2.0_12703.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vum_03G00089.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigan.03G011300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Va07G001680Va07G001680_Jingnong6Vigna angularisgene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va07G001680.3:three_prime_UTR_1_Jingnong6Va07G001680.3:three_prime_UTR_1_Jingnong6Vigna angularisthree_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va07G001680.3:exon_1_Jingnong6Va07G001680.3:exon_1_Jingnong6Vigna angularisexon
Va07G001680.3:exon_2_Jingnong6Va07G001680.3:exon_2_Jingnong6Vigna angularisexon
Va07G001680.3:exon_3_Jingnong6Va07G001680.3:exon_3_Jingnong6Vigna angularisexon
Va07G001680.3:exon_4_Jingnong6Va07G001680.3:exon_4_Jingnong6Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va07G001680.3_Jingnong6-cdsVa07G001680.3_Jingnong6-cds-Chr7_Jingnong6:791054..791158Vigna angularisCDS
Va07G001680.3_Jingnong6-cdsVa07G001680.3_Jingnong6-cds-Chr7_Jingnong6:791616..791666Vigna angularisCDS
Va07G001680.3_Jingnong6-cdsVa07G001680.3_Jingnong6-cds-Chr7_Jingnong6:791836..791926Vigna angularisCDS
Va07G001680.3_Jingnong6-cdsVa07G001680.3_Jingnong6-cds-Chr7_Jingnong6:792138..792253Vigna angularisCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va07G001680.3:five_prime_UTR_1_Jingnong6Va07G001680.3:five_prime_UTR_1_Jingnong6Vigna angularisfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Va07G001680.3_Jingnong6Va07G001680.3_Jingnong6Vigna angularispolypeptide
Va07G001680.3_Jingnong6Va07G001680.3_Jingnong6-proteinVigna angularispolypeptide


Homology
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0GFZ9|A0A0R0GFZ9_SOYBN (DNA-directed RNA polymerase subunit OS=Glycine max OX=3847 GN=GLYMA_14G007900 PE=4 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.301e-71
Identity = 105/120 (87.50%), Postives = 111/120 (92.50%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFPMGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVCIIYNFHNVKQ 120
            MFFHIVLER MQLHPRYFG N+RDNLVSKLMKDV+GTCSGRH FVVAVTGIEN+GKGLI DGTGFVTFPMGFF EAGPVQIFVSN LIPDDMEFQSGD+PNYTTSDGSV +IYNF N K+
Sbjct:    1 MFFHIVLERKMQLHPRYFGCNIRDNLVSKLMKDVKGTCSGRHKFVVAVTGIENIGKGLIHDGTGFVTFPMGFFAEAGPVQIFVSNQLIPDDMEFQSGDLPNYTTSDGSVYLIYNFLNGKE 120
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RIQ9|A0A0S3RIQ9_PHAAN (DNA-directed RNA polymerase subunit OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G011300 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.193e-68
Identity = 110/136 (80.88%), Postives = 110/136 (80.88%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVCI 111
            MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP                         MGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSV I
Sbjct:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEIVEAVVTMVNKMGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKI 136
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9UUV1|A0A0L9UUV1_PHAAN (DNA-directed RNA polymerase subunit OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0253720 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.193e-68
Identity = 110/136 (80.88%), Postives = 110/136 (80.88%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVCI 111
            MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP                         MGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSV I
Sbjct:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEIVEAVVTMVNKMGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKI 136
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6PDP8|A0A2Z6PDP8_TRISU (DNA-directed RNA polymerase subunit (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_83180 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.622e-68
Identity = 108/136 (79.41%), Postives = 109/136 (80.15%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVCI 111
            MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIRDGTGFVTFP                         MGFF EAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSV I
Sbjct:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKI 136
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445KMU1|A0A445KMU1_GLYSO (DNA-directed RNA polymerase subunit OS=Glycine soja OX=3848 GN=D0Y65_012160 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.077e-68
Identity = 108/136 (79.41%), Postives = 109/136 (80.15%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVCI 111
            MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIRDGTGFVTFP                         MGFF EAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSV I
Sbjct:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKI 136
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/TrEMBL
Match: tr|I1K337|I1K337_SOYBN (DNA-directed RNA polymerase subunit OS=Glycine max OX=3847 GN=100793057 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.077e-68
Identity = 108/136 (79.41%), Postives = 109/136 (80.15%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVCI 111
            MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIRDGTGFVTFP                         MGFF EAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSV I
Sbjct:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKI 136
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8K4N7|A0A8B8K4N7_ABRPR (DNA-directed RNA polymerase subunit OS=Abrus precatorius OX=3816 GN=LOC113852519 PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.454e-68
Identity = 108/133 (81.20%), Postives = 109/133 (81.95%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP----------------------MGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVCI 111
            MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP                      MGFF EAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSV I
Sbjct:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKI 133
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445DM75|A0A445DM75_ARAHY (DNA-directed RNA polymerase subunit OS=Arachis hypogaea OX=3818 GN=Ahy_A03g010433 PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 4.541e-68
Identity = 108/136 (79.41%), Postives = 109/136 (80.15%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVCI 111
            MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIRDGTGFVTFP                         MGFF EAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSV I
Sbjct:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKI 136
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4CVS4|A0A6P4CVS4_ARADU (DNA-directed RNA polymerase subunit OS=Arachis duranensis OX=130453 GN=LOC107481666 PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 4.541e-68
Identity = 108/136 (79.41%), Postives = 109/136 (80.15%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVCI 111
            MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIRDGTGFVTFP                         MGFF EAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSV I
Sbjct:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKI 136
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6L5P7|A0A4D6L5P7_VIGUN (DNA-directed RNA polymerase subunit OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g4194 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 4.903e-68
Identity = 108/136 (79.41%), Postives = 109/136 (80.15%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVCI 111
            MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIRDGTGFVTFP                         MGFF EAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSV I
Sbjct:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKI 136
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/Swiss-Prot
Match: DNA-directed (RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.170e-70
Identity = 108/136 (79.41%), Postives = 109/136 (80.15%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVCI 111
            MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIRDGTGFVTFP                         MGFF EAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSV I
Sbjct:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKI 136
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/Swiss-Prot
Match: DNA-directed (RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.120e-66
Identity = 100/136 (73.53%), Postives = 107/136 (78.68%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVCI 111
            MFFHIVLERNMQLHPR+FGRNL++NLVSKLMKDVEGTCSGRHGFVVA+TGI+ +GKGLIRDGTGFVTFP                         MGFF EAGPVQIFVS HLIPDDMEFQ+GDMPNYTTSDGSV I
Sbjct:    1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKI 136
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/Swiss-Prot
Match: DNA-directed (RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.560e-30
Identity = 58/137 (42.34%), Postives = 78/137 (56.93%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVCI 111
            MF+HI LE  + LHPRYFG NL + +  KL  +VEGTC+G++GFV+AVT I+N+G G+I+ G GFV +P                         +G F E GP+  F+S H IP +MEF  + + P Y T D  V I
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVI 137
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/Swiss-Prot
Match: DNA-directed (RNA polymerase II subunit RPB7 OS=Rattus norvegicus OX=10116 GN=Polr2g PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.039e-30
Identity = 57/137 (41.61%), Postives = 78/137 (56.93%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVCI 111
            MF+HI LE  + LHPRYFG NL + +  KL  +VEGTC+G++GFV+AVT I+N+G G+I+ G GFV +P                         +G F E GP+  F+S H IP +MEF  + + P Y T D  + I
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVI 137
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/Swiss-Prot
Match: DNA-directed (RNA polymerase II subunit RPB7 OS=Mus musculus OX=10090 GN=Polr2g PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.039e-30
Identity = 57/137 (41.61%), Postives = 78/137 (56.93%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVCI 111
            MF+HI LE  + LHPRYFG NL + +  KL  +VEGTC+G++GFV+AVT I+N+G G+I+ G GFV +P                         +G F E GP+  F+S H IP +MEF  + + P Y T D  + I
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVI 137
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/Swiss-Prot
Match: DNA-directed (RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.039e-30
Identity = 57/137 (41.61%), Postives = 78/137 (56.93%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVCI 111
            MF+HI LE  + LHPRYFG NL + +  KL  +VEGTC+G++GFV+AVT I+N+G G+I+ G GFV +P                         +G F E GP+  F+S H IP +MEF  + + P Y T D  + I
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVI 137
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/Swiss-Prot
Match: DNA-directed (RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.039e-30
Identity = 57/137 (41.61%), Postives = 78/137 (56.93%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVCI 111
            MF+HI LE  + LHPRYFG NL + +  KL  +VEGTC+G++GFV+AVT I+N+G G+I+ G GFV +P                         +G F E GP+  F+S H IP +MEF  + + P Y T D  + I
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVI 137
[Close]
BLAST of Va07G001680.3 vs. UniProtKB/Swiss-Prot
Match: DNA-directed (RNA polymerase II subunit rpb7 OS=Dictyostelium discoideum OX=44689 GN=polr2g PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.446e-26
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTF-------------------------PMGFFGEAGPVQIFVSNHLIPDDMEFQS-GDMPNYTTSDGS 108
            MFFH+ LE+++ +HP++ G NL      +L  +VEGTC+GR+GF++ +T ++ + KG + + +G+V F                          +GFF EAGP+ IFVS  LIP DM F +   +P + + DGS
Sbjct:    1 MFFHLTLEKDLHMHPKHCGPNLFTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPLSIFVSTQLIPSDMIFDAQSAVPCFVSEDGS 134
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BLAST of Va07G001680.3 vs. UniProtKB/Swiss-Prot
Match: DNA-directed (RNA polymerase II subunit rpb7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpb7 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.299e-21
Identity = 48/133 (36.09%), Postives = 70/133 (52.63%), Query Frame = 0 
Query:    2 FFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAV--TGIENVGKGLIRDGTGFVTF-------------------------PMGFFGEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSD 106
            FF   L   + LHP YFG  ++D L +KL+ DVEGTCSG++G+++ V  +   ++ KG +  G GF  F                          MGFF   GP+ +FVS+HL+P DM+F  + + PNY+  D
Sbjct:    3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGED 135
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BLAST of Va07G001680.3 vs. UniProtKB/Swiss-Prot
Match: DNA-directed (RNA polymerase II subunit RPB7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPB7 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.333e-17
Identity = 42/139 (30.22%), Postives = 72/139 (51.80%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVG---------------------------KGLIRDGTGFVTFPMGFFGEAGPVQIFVSNHLIPDDMEFQSG-DMPNYTTSDGSVCI 111
            MFF   L  N+ LHP +FG  ++  L +KL+++VEG+C+G+ G+++ V   +N+                            KG + DGT       GF  + GP+++FV+ HL+P D+ F +G + P+Y +S+  + I
Sbjct:    1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITI 139
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BLAST of Va07G001680.3 vs. Araport11
Match: | (Symbols: NRPB7 | | chr5:23883499-23884976 FORWARD LENGTH=176)

HSP 1 Score: 201.445 bits (511), Expect = 2.214e-67
Identity = 100/136 (73.53%), Postives = 107/136 (78.68%), Query Frame = 0 
Query:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFP-------------------------MGFFGEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVCI 111
            MFFHIVLERNMQLHPR+FGRNL++NLVSKLMKDVEGTCSGRHGFVVA+TGI+ +GKGLIRDGTGFVTFP                         MGFF EAGPVQIFVS HLIPDDMEFQ+GDMPNYTTSDGSV I
Sbjct:    1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKI 136
The following BLAST results are available for this feature:
BLAST of Va07G001680.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A0R0GFZ9|A0A0R0GFZ9_SOYBN3.301e-7187.50DNA-directed RNA polymerase subunit OS=Glycine max... [more]
tr|A0A0S3RIQ9|A0A0S3RIQ9_PHAAN1.193e-6880.88DNA-directed RNA polymerase subunit OS=Vigna angul... [more]
tr|A0A0L9UUV1|A0A0L9UUV1_PHAAN1.193e-6880.88DNA-directed RNA polymerase subunit OS=Phaseolus a... [more]
tr|A0A2Z6PDP8|A0A2Z6PDP8_TRISU1.622e-6879.41DNA-directed RNA polymerase subunit (Fragment) OS=... [more]
tr|A0A445KMU1|A0A445KMU1_GLYSO3.077e-6879.41DNA-directed RNA polymerase subunit OS=Glycine soj... [more]
tr|I1K337|I1K337_SOYBN3.077e-6879.41DNA-directed RNA polymerase subunit OS=Glycine max... [more]
tr|A0A8B8K4N7|A0A8B8K4N7_ABRPR3.454e-6881.20DNA-directed RNA polymerase subunit OS=Abrus preca... [more]
tr|A0A445DM75|A0A445DM75_ARAHY4.541e-6879.41DNA-directed RNA polymerase subunit OS=Arachis hyp... [more]
tr|A0A6P4CVS4|A0A6P4CVS4_ARADU4.541e-6879.41DNA-directed RNA polymerase subunit OS=Arachis dur... [more]
tr|A0A4D6L5P7|A0A4D6L5P7_VIGUN4.903e-6879.41DNA-directed RNA polymerase subunit OS=Vigna ungui... [more]
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BLAST of Va07G001680.3 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
DNA-directed1.170e-7079.41RNA polymerase II subunit RPB7 OS=Glycine max OX=3... [more]
DNA-directed2.120e-6673.53RNA polymerase II subunit 7 OS=Arabidopsis thalian... [more]
DNA-directed2.560e-3042.34RNA polymerase II subunit RPB7 OS=Danio rerio OX=7... [more]
DNA-directed4.039e-3041.61RNA polymerase II subunit RPB7 OS=Rattus norvegicu... [more]
DNA-directed4.039e-3041.61RNA polymerase II subunit RPB7 OS=Mus musculus OX=... [more]
DNA-directed4.039e-3041.61RNA polymerase II subunit RPB7 OS=Homo sapiens OX=... [more]
DNA-directed4.039e-3041.61RNA polymerase II subunit RPB7 OS=Bos taurus OX=99... [more]
DNA-directed5.446e-2635.82RNA polymerase II subunit rpb7 OS=Dictyostelium di... [more]
DNA-directed1.299e-2136.09RNA polymerase II subunit rpb7 OS=Schizosaccharomy... [more]
DNA-directed3.333e-1730.22RNA polymerase II subunit RPB7 OS=Saccharomyces ce... [more]
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BLAST of Va07G001680.3 vs. Araport11
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
|2.214e-6773.53Symbols: NRPB7 | | chr5:23883499-23884976 FORWARD... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna angularis cv. Jingnong6 genome v1.7.1
Date Performed: 2024-05-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableFUNFAMG3DSA:3.30.1490.120:FF:000001coord: 1..73
e-value: 3.1E-25
score: 90.3
NoneNo IPR availableCDDcd04329RNAP_II_Rpb7_Ncoord: 2..72
e-value: 6.15762E-32
score: 106.112
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 70..118
e-value: 4.6E-9
score: 38.0
IPR005576RNA polymerase Rpb7-like , N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 8..64
e-value: 4.9E-12
score: 57.1
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 1..69
e-value: 4.8E-21
score: 76.8
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilySUPERFAMILY88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 1..72
IPR045113RNA polymerase subunit Rpb7-likePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 1..71

Sequences
The following sequences are available for this feature:

mRNA sequence

>Va07G001680.3_Jingnong6 ID=Va07G001680.3_Jingnong6; Name=Va07G001680.3; organism=Vigna angularis; type=mRNA; length=363bp
ATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGATA
CTTTGGTCGTAACCTTCGTGATAATCTTGTTTCCAAATTAATGAAAGACG
TGGAAGGCACTTGCAGTGGTCGACATGGATTTGTGGTGGCAGTTACAGGG
ATTGAAAACGTAGGGAAAGGGTTAATTCGTGATGGTACAGGGTTTGTGAC
ATTTCCTATGGGATTTTTTGGTGAAGCTGGACCGGTCCAAATCTTTGTTT
CAAACCACTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCA
AATTACACTACTTCAGATGGATCAGTATGTATCATTTATAACTTCCATAA
TGTAAAACAGTAG
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protein sequence of Va07G001680.3_Jingnong6

>Va07G001680.3_Jingnong6 ID=Va07G001680.3_Jingnong6; Name=Va07G001680.3_Jingnong6; organism=Vigna angularis; type=polypeptide; length=120bp
MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTG
IENVGKGLIRDGTGFVTFPMGFFGEAGPVQIFVSNHLIPDDMEFQSGDMP
NYTTSDGSVCIIYNFHNVKQ
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mRNA from alignment at Chr7:790993..792467-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Va07G001680.3_Jingnong6 ID=Va07G001680.3_Jingnong6; Name=Va07G001680.3; organism=Vigna angularis; type=mRNA; length=1475bp; location=Sequence derived from: Chr7:790993..792467- (Vigna angularis
GTTCAAATCAGTAAAATTTTTGGACGGAAATAGTGTATCCGACCCGCCCC
CACGGAGTTGCCAATTCCTAGATGCGTTATGCCCATTCGATTGAATGCGT
TTCAGTTTTATCTTTTTCGATTGTATTTTCGAAATCCCATCTTATTCTGT
GTTTTTCTGGCAGTAGTAACGGACCAGATTGGGCAAGAAGGGAGGCAAAA
GAAGTGACGGGAAAATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAG
CTGCATCCACGATACTTTGGTCGTAACCTTCGTGATAATCTTGTTTCCAA
ATTAATGAAAGACGTGGAAGGCACTTGCAGGTGATTCCCCTTATGGGGGC
ATTCGAAAATAGTGGTTGAAAATGGCATGTTGTAGTTTTACCCAGTTATA
CAAGTTATTATAGTAAATTTTGTTGTACATTTGATTGAACATTATATAAT
TTAGATCAGAGAAAAGTATTTATCCGTAAGTGACTGATTTGAACCTTGGA
TGAATATAACATTTGGATTTGGATTTTCAACTATTATGCAGTGGTCGACA
TGGATTTGTGGTGGCAGTTACAGGGATTGAAAACGTAGGGAAAGGGTTAA
TTCGTGATGGTACAGGGTTTGTGACATTTCCTGTTAAGTACCAGTGTGTT
GTCTTCAGACCATTTAAGGGGGAGATCGTAGAAGCTGTTGTTACCATGGT
GAACAAGGTTTATGCAATTCTTTTCTCTTTAGGGTAATTAAACTATGTAA
CTCTAATATGTGGAGATTGTAGTTTATGACTGTTGAGCTATATTTGTACA
GATGGGATTTTTTGGTGAAGCTGGACCGGTCCAAATCTTTGTTTCAAACC
ACGTAAGTTTGTCTTCAATAATCGGAGAAATGGTCTTTATTATCTACATG
TTATATCTAAAAGGTTGTTAGTATTGTTCTTCATTTTGAATAGTAAAGAT
GTGTTTTTTATTGGAATATTATCCTAGTTTTTAATTTTGAACACTAAAAT
TGTATTTTCATTTATTATTTGCTATTTGCTACTACTACATAGTTTAATTT
ATACTGTGGTGATTGTAGACATGCAAACCATCTTAAATTCTAGATCTCAA
CGAACTCTCTTTGTTTTACCTTCTCAAATAGTTATATCTCTGCTGTTTTT
AGAATTACCAAGGATTATTTTCTGTTCCTTTTCTATTTTCTTAAAATTAA
TTTAACATAGACTCTGTCATTTCATTGCAATGAAAAAGTTTTATCTTGTT
ACTCGTACATTTTTATATAATTTTTGTTTATTAAGATACCTTTTTATCTT
CCCTATTAGTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCC
AAATTACACTACTTCAGATGGATCAGTATGTATCATTTATAACTTCCATA
ATGTAAAACAGTAGAGAAGTCTCTTTTTTATTTATTGTCATTTGTTTTTC
ATCTTATGATTATTTTTACTATCAA
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Coding sequence (CDS) from alignment at Chr7:790993..792467-

>Va07G001680.3_Jingnong6 ID=Va07G001680.3_Jingnong6; Name=Va07G001680.3; organism=Vigna angularis; type=CDS; length=363bp; location=Sequence derived from: Chr7:790993..792467- (Vigna angularis
ATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGATA
CTTTGGTCGTAACCTTCGTGATAATCTTGTTTCCAAATTAATGAAAGACG
TGGAAGGCACTTGCAGTGGTCGACATGGATTTGTGGTGGCAGTTACAGGG
ATTGAAAACGTAGGGAAAGGGTTAATTCGTGATGGTACAGGGTTTGTGAC
ATTTCCTATGGGATTTTTTGGTGAAGCTGGACCGGTCCAAATCTTTGTTT
CAAACCACTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCA
AATTACACTACTTCAGATGGATCAGTATGTATCATTTATAACTTCCATAA
TGTAAAACAGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR005576Rpb7-like_N
IPR036898RNA_pol_Rpb7-like_N_sf
IPR045113Rpb7-like
Vocabulary: Biological Process
TermDefinition
GO:0006351DNA-templated transcription
GO:0006352DNA-templated transcription initiation