Va07G002020.1

Transcript Overview
NameVa07G002020.1
Unique NameVa07G002020.1_Jingnong6
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length384
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr7chromosomeChr7:1042140..1042625 +Vigna angularis cv. Jingnong6 genome v1.7.1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
avjavjL104Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanR655Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcanR656Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcanR693Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaR727Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
avjccR1190Cajanus cajan Asha genome v1.0Cajanus cajan
avjcaR767Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
avjccR1248Cajanus cajan Asha genome v1.0Cajanus cajan
avjpsR715Pisum sativum Cameor genome v1aPisum sativum
avjpsR746Pisum sativum Cameor genome v1aPisum sativum
avjvfhR785Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
avjpvR792Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
avjvfhR809Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
avjpvR806Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
avjpvR807Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
avjvrvR572Vigna radiata cv. VC1973A genome v6.0Vigna radiata
avjvrvR603Vigna radiata cv. VC1973A genome v6.0Vigna radiata
avjvrvR622Vigna radiata cv. VC1973A genome v6.0Vigna radiata
avjvuR583Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjvuR595Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjvuR598Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjvssR834Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjvssR861Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjvssR902Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjcarR699Cicer arietinum
avjcarR700Cicer arietinum
avjcarR733Cicer arietinum
avjccaR697Cajanus cajan cv. Asha genome v2.0Cajanus cajan
avjvumR630Vigna umbellata FF25 genome v1.0Vigna umbellata
avjccaR730Cajanus cajan cv. Asha genome v2.0Cajanus cajan
avjccaR732Cajanus cajan cv. Asha genome v2.0Cajanus cajan
avjvumR640Vigna umbellata FF25 genome v1.0Vigna umbellata
avjvvaR782Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvvaR818Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvvaR836Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvasR616Vigna angularis cv. Shumari genome v1.a1Vigna angularis
avjvasR625Vigna angularis cv. Shumari genome v1.a1Vigna angularis
avjvstR652Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
avjvstR662Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
avjvunR502Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
avjvunR516Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
avjvunR519Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
avjpvfR799Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
avjpvfR811Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
avjpvfR816Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Va07G002020Va07G002020_Jingnong6Vigna angularisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va07G002020.1:exon_1_Jingnong6Va07G002020.1:exon_1_Jingnong6Vigna angularisexon
Va07G002020.1:exon_2_Jingnong6Va07G002020.1:exon_2_Jingnong6Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va07G002020.1_Jingnong6-cdsVa07G002020.1_Jingnong6-cds-Chr7_Jingnong6:1042140..1042203Vigna angularisCDS
Va07G002020.1_Jingnong6-cdsVa07G002020.1_Jingnong6-cds-Chr7_Jingnong6:1042306..1042625Vigna angularisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Va07G002020.1_Jingnong6Va07G002020.1_Jingnong6Vigna angularispolypeptide
Va07G002020.1_Jingnong6Va07G002020.1_Jingnong6-proteinVigna angularispolypeptide


Homology
[Close]
BLAST of Va07G002020.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9VAM8|A0A0L9VAM8_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g078000 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.281e-28
Identity = 60/78 (76.92%), Postives = 63/78 (80.77%), Query Frame = 0 
Query:    1 YRRTLTFGIGIVILPKECGRRSPPRAASVPTTSSSGSVDRTVDSADRAVDSAIAADLGLRLVHVDTSRTEEIADTVMG 78
            YRRTLTFGIGI+ILPKE  RR   R  S       GS DRTVDSADRAVDSA+AADLGLRLVHV+TSRTEEIADTVMG
Sbjct:   55 YRRTLTFGIGIMILPKEYARRYKSRLRSYHLIVYLGSADRTVDSADRAVDSALAADLGLRLVHVNTSRTEEIADTVMG 132
[Close]
BLAST of Va07G002020.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3R0R7|A0A0S3R0R7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G187400 PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.005e-27
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 0 
Query:   36 GSVDRTVDSADRAVDSAIAADLGLRLVHVDTSRTEEIADTVMGLFLGLLRRTHLLPPRALRL--WLARLRP 104
            GS DRTVDSADRAVDSA+AADLGL LVHVDTSRTEEIADTVMGLFLGLLRRTHLL   AL    WL  ++P
Sbjct:   74 GSADRTVDSADRAVDSALAADLGLHLVHVDTSRTEEIADTVMGLFLGLLRRTHLLSRHALSASGWLGFVQP 144
[Close]
BLAST of Va07G002020.1 vs. UniProtKB/TrEMBL
Match: tr|A0A8T0LCM6|A0A8T0LCM6_PHAAN (C-terminal binding protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0003990 PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.160e-25
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 0 
Query:   36 GSVDRTVDSADRAVDSAIAADLGLRLVHVDTSRTEEIADTVMGLFLGLLRRTHLLPPRALRL--WLARLRP 104
            GS DRTVDSADRAVDSA+AADLGL LVHVDTSRTEEIADTVMGLFLGLLRRTHLL   AL    WL  ++P
Sbjct:   22 GSADRTVDSADRAVDSALAADLGLHLVHVDTSRTEEIADTVMGLFLGLLRRTHLLSRHALSASGWLGFVQP 92
[Close]
BLAST of Va07G002020.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392R0U6|A0A392R0U6_9FABA (C-terminal binding protein AN (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-20
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 0 
Query:   42 VDSADRAVDSAIAADLGLRLVHVDTSRTEEIADTVMGLFLGLLRRTHLLPPRALRL--WLARLRP 104
            + SADRAVDS++AADLGLRLVHVDTSR EEIADTVM LFLGLLRRTHLL   AL    WL  ++P
Sbjct:   45 LGSADRAVDSSLAADLGLRLVHVDTSRAEEIADTVMALFLGLLRRTHLLSRHALSASGWLGSVQP 109
[Close]
BLAST of Va07G002020.1 vs. UniProtKB/TrEMBL
Match: tr|B9I8P4|B9I8P4_POPTR (D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G089400 PE=4 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.355e-19
Identity = 50/63 (79.37%), Postives = 52/63 (82.54%), Query Frame = 0 
Query:   44 SADRAVDSAIAADLGLRLVHVDTSRTEEIADTVMGLFLGLLRRTHLLPPRALRL--WLARLRP 104
            SADRAVDSA+AADLGLRLVHVDTSR EEIADTVM LFLGLLRRTHLL   AL    WL  L+P
Sbjct:  108 SADRAVDSALAADLGLRLVHVDTSRAEEIADTVMALFLGLLRRTHLLSRHALSASGWLGSLQP 170
[Close]
BLAST of Va07G002020.1 vs. UniProtKB/TrEMBL
Match: tr|A0A8T0JV83|A0A8T0JV83_PHAAN (C-terminal binding protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0147200 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.423e-19
Identity = 48/70 (68.57%), Postives = 54/70 (77.14%), Query Frame = 0 
Query:   37 SVDRTVDSADRAVDSAIAADLGLRLVHVDTSRTEEIADTVMGLFLGLLRRTHLLPPRALRL--WLARLRP 104
            S D  VDS D AVDSA++A+LGLRLVHVDTSR EEIADTVM LFLGLLRRTHL+   AL    WL  ++P
Sbjct:   81 SGDHVVDSGDHAVDSALSANLGLRLVHVDTSRAEEIADTVMALFLGLLRRTHLVSRHALSASSWLGSVQP 150
[Close]
BLAST of Va07G002020.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445J624|A0A445J624_GLYSO (C-terminal binding protein AN OS=Glycine soja OX=3848 GN=D0Y65_025259 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.348e-19
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0 
Query:   44 SADRAVDSAIAADLGLRLVHVDTSRTEEIADTVMGLFLGLLRRTHLLPPRALRL--WLARLRP 104
            SADRAVDSA+AADLGLRLVHVDTSR EEIADTVM LFLGLLRRTHLL   AL    WL  ++P
Sbjct:   81 SADRAVDSALAADLGLRLVHVDTSRAEEIADTVMALFLGLLRRTHLLSRHALSASGWLGSVQP 143
[Close]
BLAST of Va07G002020.1 vs. UniProtKB/TrEMBL
Match: tr|I1L6F8|I1L6F8_SOYBN (D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding domain-containing protein OS=Glycine max OX=3847 GN=100799136 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.348e-19
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0 
Query:   44 SADRAVDSAIAADLGLRLVHVDTSRTEEIADTVMGLFLGLLRRTHLLPPRALRL--WLARLRP 104
            SADRAVDSA+AADLGLRLVHVDTSR EEIADTVM LFLGLLRRTHLL   AL    WL  ++P
Sbjct:   81 SADRAVDSALAADLGLRLVHVDTSRAEEIADTVMALFLGLLRRTHLLSRHALSASGWLGSVQP 143
[Close]
BLAST of Va07G002020.1 vs. UniProtKB/TrEMBL
Match: tr|V7B1U6|V7B1U6_PHAVU (D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G058900g PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.369e-19
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0 
Query:   44 SADRAVDSAIAADLGLRLVHVDTSRTEEIADTVMGLFLGLLRRTHLLPPRALRL--WLARLRP 104
            SADRAVDSA+AADLGLRLVHVDTSR EEIADTVM LFLGLLRRTHLL   AL    WL  ++P
Sbjct:   81 SADRAVDSALAADLGLRLVHVDTSRAEEIADTVMALFLGLLRRTHLLSRHALSASGWLGSVQP 143
[Close]
BLAST of Va07G002020.1 vs. UniProtKB/TrEMBL
Match: tr|A0A8T2X9B5|A0A8T2X9B5_POPDE (D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_024384 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.899e-19
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0 
Query:   44 SADRAVDSAIAADLGLRLVHVDTSRTEEIADTVMGLFLGLLRRTHLLPPRALRL--WLARLRP 104
            SADRAVDSA+AADLGLRLVHVD+SR EEIADTVM LFLGLLRRTHLL   AL    WL  L+P
Sbjct:  102 SADRAVDSALAADLGLRLVHVDSSRAEEIADTVMALFLGLLRRTHLLSRHALSASGWLGSLQP 164
[Close]
BLAST of Va07G002020.1 vs. UniProtKB/Swiss-Prot
Match: C-terminal (binding protein AN OS=Arabidopsis thaliana OX=3702 GN=AN PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.212e-20
Identity = 48/63 (76.19%), Postives = 50/63 (79.37%), Query Frame = 0 
Query:   44 SADRAVDSAIAADLGLRLVHVDTSRTEEIADTVMGLFLGLLRRTHLLPPRALRL--WLARLRP 104
            SADRAVDS +AADLGLRLVHVDTSR EEIADTVM L LGLLRRTHLL   AL    WL  L+P
Sbjct:   91 SADRAVDSTLAADLGLRLVHVDTSRAEEIADTVMALILGLLRRTHLLSRHALSASGWLGSLQP 153
[Close]
BLAST of Va07G002020.1 vs. Araport11
Match: | (Symbols: DOQ, AN | ANGUSTIFOLIA, DETORQUEO | chr1:187235-189836 FORWARD LENGTH=636)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-21
Identity = 48/63 (76.19%), Postives = 50/63 (79.37%), Query Frame = 0 
Query:   44 SADRAVDSAIAADLGLRLVHVDTSRTEEIADTVMGLFLGLLRRTHLLPPRALRL--WLARLRP 104
            SADRAVDS +AADLGLRLVHVDTSR EEIADTVM L LGLLRRTHLL   AL    WL  L+P
Sbjct:   91 SADRAVDSTLAADLGLRLVHVDTSRAEEIADTVMALILGLLRRTHLLSRHALSASGWLGSLQP 153
The following BLAST results are available for this feature:
BLAST of Va07G002020.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A0L9VAM8|A0A0L9VAM8_PHAAN1.281e-2876.92Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|A0A0S3R0R7|A0A0S3R0R7_PHAAN6.005e-2780.28Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|A0A8T0LCM6|A0A8T0LCM6_PHAAN1.160e-2580.28C-terminal binding protein OS=Phaseolus angularis ... [more]
tr|A0A392R0U6|A0A392R0U6_9FABA3.704e-2073.85C-terminal binding protein AN (Fragment) OS=Trifol... [more]
tr|B9I8P4|B9I8P4_POPTR1.355e-1979.37D-isomer specific 2-hydroxyacid dehydrogenase NAD-... [more]
tr|A0A8T0JV83|A0A8T0JV83_PHAAN1.423e-1968.57C-terminal binding protein OS=Phaseolus angularis ... [more]
tr|A0A445J624|A0A445J624_GLYSO2.348e-1977.78C-terminal binding protein AN OS=Glycine soja OX=3... [more]
tr|I1L6F8|I1L6F8_SOYBN2.348e-1977.78D-isomer specific 2-hydroxyacid dehydrogenase NAD-... [more]
tr|V7B1U6|V7B1U6_PHAVU2.369e-1977.78D-isomer specific 2-hydroxyacid dehydrogenase NAD-... [more]
tr|A0A8T2X9B5|A0A8T2X9B5_POPDE2.899e-1977.78D-isomer specific 2-hydroxyacid dehydrogenase NAD-... [more]
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BLAST of Va07G002020.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
C-terminal1.212e-2076.19binding protein AN OS=Arabidopsis thaliana OX=3702... [more]
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BLAST of Va07G002020.1 vs. Araport11
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
|1.226e-2176.19Symbols: DOQ, AN | ANGUSTIFOLIA, DETORQUEO | chr1:... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna angularis cv. Jingnong6 genome v1.7.1
Date Performed: 2024-05-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR045015C-terminal binding protein AN-likePANTHERPTHR43254C-TERMINAL BINDING PROTEIN AN-RELATEDcoord: 42..95

Sequences
The following sequences are available for this feature:

mRNA sequence

>Va07G002020.1_Jingnong6 ID=Va07G002020.1_Jingnong6; Name=Va07G002020.1; organism=Vigna angularis; type=mRNA; length=384bp
TACCGAAGGACTTTAACGTTCGGTATTGGTATAGTGATTTTACCGAAAGA
ATGTGGCCGTCGGTCGCCACCCAGAGCCGCCTCCGTTCCTACCACCTCAT
CGTCCGGCTCCGTCGACCGCACCGTGGACTCTGCCGACCGCGCCGTCGAC
TCTGCCATTGCCGCTGACCTCGGCCTTCGCCTCGTCCACGTCGACACCTC
GCGCACCGAGGAGATCGCAGACACCGTCATGGGGCTCTTCCTCGGCCTCC
TCCGCCGCACGCACCTCCTCCCGCCACGCGCTCTCCGCCTCTGGCTGGCT
CGGCTTCGTCCAGCCTCTCTGCCGTGGGATGCGCCGCTGTCGCGGCCTTG
TTCTCAGCATCGTCGGAATCTCCGCGTCGGCTAG
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protein sequence of Va07G002020.1_Jingnong6

>Va07G002020.1_Jingnong6 ID=Va07G002020.1_Jingnong6; Name=Va07G002020.1_Jingnong6; organism=Vigna angularis; type=polypeptide; length=127bp
YRRTLTFGIGIVILPKECGRRSPPRAASVPTTSSSGSVDRTVDSADRAVD
SAIAADLGLRLVHVDTSRTEEIADTVMGLFLGLLRRTHLLPPRALRLWLA
RLRPASLPWDAPLSRPCSQHRRNLRVG
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mRNA from alignment at Chr7:1042140..1042625+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Va07G002020.1_Jingnong6 ID=Va07G002020.1_Jingnong6; Name=Va07G002020.1; organism=Vigna angularis; type=mRNA; length=486bp; location=Sequence derived from: Chr7:1042140..1042625+ (Vigna angularis
TACCGAAGGACTTTAACGTTCGGTATTGGTATAGTGATTTTACCGAAAGA
ATGTGGCCGTCGGTGTAAGGTTCGACTTATGAAATTAGAATTTGAGATTT
TTCTCTCCCATTCTCCCAAATTTTGTCTTCCTTAAAACTCTCCCGGACTC
CCTCGCCTACCTCCCGCGCCACCCAGAGCCGCCTCCGTTCCTACCACCTC
ATCGTCCGGCTCCGTCGACCGCACCGTGGACTCTGCCGACCGCGCCGTCG
ACTCTGCCATTGCCGCTGACCTCGGCCTTCGCCTCGTCCACGTCGACACC
TCGCGCACCGAGGAGATCGCAGACACCGTCATGGGGCTCTTCCTCGGCCT
CCTCCGCCGCACGCACCTCCTCCCGCCACGCGCTCTCCGCCTCTGGCTGG
CTCGGCTTCGTCCAGCCTCTCTGCCGTGGGATGCGCCGCTGTCGCGGCCT
TGTTCTCAGCATCGTCGGAATCTCCGCGTCGGCTAG
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Coding sequence (CDS) from alignment at Chr7:1042140..1042625+

>Va07G002020.1_Jingnong6 ID=Va07G002020.1_Jingnong6; Name=Va07G002020.1; organism=Vigna angularis; type=CDS; length=384bp; location=Sequence derived from: Chr7:1042140..1042625+ (Vigna angularis
TACCGAAGGACTTTAACGTTCGGTATTGGTATAGTGATTTTACCGAAAGA
ATGTGGCCGTCGGTCGCCACCCAGAGCCGCCTCCGTTCCTACCACCTCAT
CGTCCGGCTCCGTCGACCGCACCGTGGACTCTGCCGACCGCGCCGTCGAC
TCTGCCATTGCCGCTGACCTCGGCCTTCGCCTCGTCCACGTCGACACCTC
GCGCACCGAGGAGATCGCAGACACCGTCATGGGGCTCTTCCTCGGCCTCC
TCCGCCGCACGCACCTCCTCCCGCCACGCGCTCTCCGCCTCTGGCTGGCT
CGGCTTCGTCCAGCCTCTCTGCCGTGGGATGCGCCGCTGTCGCGGCCTTG
TTCTCAGCATCGTCGGAATCTCCGCGTCGGCTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR045015AN-like
Vocabulary: Biological Process
TermDefinition
GO:0000226microtubule cytoskeleton organization