Vfaba.Hedin2.R1.1g068520.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4MEX6|A0A6P4MEX6_GOSAR (outer envelope protein 80, chloroplastic-like OS=Gossypium arboreum OX=29729 GN=LOC108456518 PE=4 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.796e-15 Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0 Query: 45 FLISSYLVSLLSYTGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102 F+ +V++L GKVDLVMNVVERPSGGFSAGGGISSGITSGPL GLIGS + R Sbjct: 4 FVYYRLIVNILD-AGKVDLVMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHR 60
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396JDA2|A0A396JDA2_MEDTR (Putative bacterial surface antigen (D15) OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0328911 PE=4 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.322e-15 Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 Query: 58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGS + R Sbjct: 400 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSFAYSHR 444
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|G7IUC7|G7IUC7_MEDTR (Outer membrane OMP85 family protein OS=Medicago truncatula OX=3880 GN=11425763 PE=4 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.914e-15 Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 Query: 58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGS + R Sbjct: 324 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSFAYSHR 368
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5D2YVX7|A0A5D2YVX7_GOSMU (Omp85 domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A06G139300v1 PE=4 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.977e-15 Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 0 Query: 59 GKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102 GKVDLVMNVVERPSGGFSAGGGISSGITSGPL GLIGS + R Sbjct: 11 GKVDLVMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHR 54
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A6MI38|A0A6A6MI38_HEVBR (POTRA domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_027779 PE=4 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.462e-14 Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 Query: 58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPL GLIGS T + R Sbjct: 256 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFTYSHR 300
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|B9RIA3|B9RIA3_RICCO (Sorting and assembly machinery (Sam50) protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1577380 PE=4 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.585e-14 Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 Query: 58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPL GLIGS T + R Sbjct: 352 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFTYSHR 396
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TWB4|A0A1S3TWB4_VIGRR (outer envelope protein 80, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106759423 PE=4 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.643e-14 Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0 Query: 58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102 TGKVDLVMNVVERPSGGFSAGGGISSGIT+GPLRGLIGS + R Sbjct: 327 TGKVDLVMNVVERPSGGFSAGGGISSGITNGPLRGLIGSFAYSHR 371
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151SUN4|A0A151SUN4_CAJCA (Outer envelope protein of 80 kDa OS=Cajanus cajan OX=3821 GN=KK1_013891 PE=4 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.692e-14 Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0 Query: 58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102 TGKVDLVMNVVERPSGGFSAGGGISSGIT+GPLRGLIGS + R Sbjct: 328 TGKVDLVMNVVERPSGGFSAGGGISSGITNGPLRGLIGSFAYSHR 372
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|V7BZ90|V7BZ90_PHAVU (POTRA domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G148500g PE=4 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.709e-14 Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0 Query: 58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102 TGKVDLVMNVVERPSGGFSAGGGISSGIT+GPLRGLIGS + R Sbjct: 327 TGKVDLVMNVVERPSGGFSAGGGISSGITNGPLRGLIGSFAYSHR 371
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|I1M513|I1M513_SOYBN (POTRA domain-containing protein OS=Glycine max OX=3847 GN=100801556 PE=4 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 1.710e-14 Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0 Query: 58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102 TGKVDLVMNVVERPSGGFSAGGGISSGIT+GPLRGLIGS + R Sbjct: 337 TGKVDLVMNVVERPSGGFSAGGGISSGITNGPLRGLIGSFAYSHR 381
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6H7M7|OEP80_ORYSJ (Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=OEP80 PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.668e-15 Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 Query: 58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102 + KVDLVMN+VERPSGGFSAGGGISSGIT+GPL GLIGS + R Sbjct: 316 SNKVDLVMNLVERPSGGFSAGGGISSGITNGPLSGLIGSFAYSHR 360
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/Swiss-Prot
Match: sp|A2X208|OEP80_ORYSI (Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OEP80 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.678e-15 Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 Query: 58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102 + KVDLVMN+VERPSGGFSAGGGISSGIT+GPL GLIGS + R Sbjct: 316 SNKVDLVMNLVERPSGGFSAGGGISSGITNGPLSGLIGSFAYSHR 360
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9C5J8|OEP80_ARATH (Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP80 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.851e-15 Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 0 Query: 58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102 +GKVDL+MN VERPSGGFSAGGGISSGITSGPL GLIGS + R Sbjct: 384 SGKVDLIMNCVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHR 428
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. Araport11
Match: AT5G19620.1 (| outer envelope protein of 80 kDa | Chr5:6623323-6627641 FORWARD LENGTH=732 | 201606) HSP 1 Score: 72.0182 bits (175), Expect = 5.986e-16 Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 0 Query: 58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102 +GKVDL+MN VERPSGGFSAGGGISSGITSGPL GLIGS + R Sbjct: 384 SGKVDLIMNCVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHR 428 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 3 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 1 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.1g068520.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g068520.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g068520.1; organism=Vicia faba; type=mRNA; length=312bpback to top protein sequence of Vfaba.Hedin2.R1.1g068520.1_vfh_v1 >Vfaba.Hedin2.R1.1g068520.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g068520.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g068520.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=103bpback to top mRNA from alignment at chr1S:444921959..444924120- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.1g068520.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g068520.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g068520.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:444921959..444924120- (Vicia fababack to top |