Vfaba.Hedin2.R1.2g184360.1

Transcript Overview
NameVfaba.Hedin2.R1.2g184360.1
Unique NameVfaba.Hedin2.R1.2g184360.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length462
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr2chromosomechr2:1162175916..1162176377 -Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR197Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR230Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR241Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR245Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cavfhL039Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL283Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL402Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL616Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
vfhvfhR128Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvfhR141Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL144Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL216Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR269Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR308Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvrvR272Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR297Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvssR221Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR229Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR229Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvuaR260Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvuaR268Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR269Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR311Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavfhL154Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL312Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL475Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR238Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR272Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR324Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR376Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR207Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR217Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR229Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR261Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR291Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvstR229Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR245Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR297Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvunR217Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR247Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR287Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.2g148440.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g184360Vfaba.Hedin2.R1.2g184360_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g184360.1_vfh_v1-exonVfaba.Hedin2.R1.2g184360.1_vfh_v1-exon-chr2_vfh_v1:1162175916..1162176377Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g184360.1_vfh_v1-cdsVfaba.Hedin2.R1.2g184360.1_vfh_v1-cds-chr2_vfh_v1:1162175916..1162176377Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g184360.1_vfh_v1Vfaba.Hedin2.R1.2g184360.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.2g184360.1_vfh_v1Vfaba.Hedin2.R1.2g184360.1_vfh_v1-proteinVicia fabapolypeptide


Homology
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3M5Y6|A0A2K3M5Y6_TRIPR (Serine/arginine rich-like protein SR45a (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g042105 PE=4 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.504e-37
Identity = 67/94 (71.28%), Postives = 75/94 (79.79%), Query Frame = 0 
Query:    9 RSRSRSRSIPQEAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKY-----LDCFVIMVEKL 97
            + R   RS  ++AENP   LYV GLSPRITKRELEK+FAAEGKV+DVHLVVDPWTRESRGFGFVTM TL EA+RCVKY     L+  VIMVEK+
Sbjct:   43 QGRIPHRSTSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVVDVHLVVDPWTRESRGFGFVTMATLEEADRCVKYLNRTVLEGRVIMVEKV 136
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392MKW5|A0A392MKW5_9FABA (Pre-mRNA-splicing factor CWC22-like (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0009008 PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.527e-37
Identity = 67/93 (72.04%), Postives = 74/93 (79.57%), Query Frame = 0 
Query:    9 RSRSRSRSIPQEAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKY-----LDCFVIMVEK 96
            R R   RS  ++AENP   LYV GLSPRITKRELEK+FAAEGKV+DVHLVVDPWTRESRGFGFVTM +L EA+RCVKY     L+  VIMVEK
Sbjct:   45 RGRIPHRSTSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVVDVHLVVDPWTRESRGFGFVTMASLEEADRCVKYLNRSVLEGRVIMVEK 137
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392QNZ8|A0A392QNZ8_9FABA (Pre-mRNA-splicing factor CWC22-like (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.417e-36
Identity = 64/86 (74.42%), Postives = 70/86 (81.40%), Query Frame = 0 
Query:   16 SIPQEAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKY-----LDCFVIMVEK 96
            S  ++AENP   LYV GLSPRITKRELEK+FA EGKV+DVHLVVDPWTRESRGFGFVTM TL EA+RCVKY     L+  VIMVEK
Sbjct:    1 STSRDAENPGNNLYVTGLSPRITKRELEKHFATEGKVVDVHLVVDPWTRESRGFGFVTMATLEEADRCVKYLNRSVLEGRVIMVEK 86
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NRI5|A0A2K3NRI5_TRIPR (Serine/arginine rich-like protein SR45a (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g002094 PE=4 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.131e-36
Identity = 67/93 (72.04%), Postives = 74/93 (79.57%), Query Frame = 0 
Query:    9 RSRSRSRSIPQEAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKY-----LDCFVIMVEK 96
            + R   RS  ++AENP   LYV GLSPRITKRELEK+FAAEGKV+DVHLVVDPWTRESRGFGFVTM TL EA+RCVKY     L+  VIMVEK
Sbjct:   46 QGRIPHRSTSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVVDVHLVVDPWTRESRGFGFVTMATLEEADRCVKYLNRTVLEGRVIMVEK 138
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A444Y6X7|A0A444Y6X7_ARAHY (RRM domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g093777 PE=4 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.999e-35
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = 0 
Query:   11 RSRSRSIPQEAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLDCFVI 92
            +  SRS+  +AEN    LYV GLSPRITKRELEK+FAAEGKVIDVHLVVDPWTRESRGFGFVTM  L +A+RCVKYL+C V+
Sbjct:   47 KGYSRSVSSDAENSGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMANLEDADRCVKYLNCSVL 128
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151SZD6|A0A151SZD6_CAJCA (Putative RNA-binding protein C25G10.01 OS=Cajanus cajan OX=3821 GN=KK1_015614 PE=4 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.170e-34
Identity = 64/82 (78.05%), Postives = 68/82 (82.93%), Query Frame = 0 
Query:   20 EAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLD-----CFVIMVEK 96
            +AENP   LYV GLSPRITKRELEK+FAAEGKVIDVHLVVDPWTRESRGFGFVTM T+ EA+RCVKYLD       VI VEK
Sbjct:   44 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVHEADRCVKYLDRSVLEGRVITVEK 125
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0FJ68|A0A3Q0FJ68_VIGRR (serine/arginine-rich splicing factor SR45a isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106776060 PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.182e-34
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 0 
Query:   20 EAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKY-----LDCFVIMVEKL 97
            +AENP   LYV GLSPRITKRELEK+FAAEGKVIDVHLVVDPWTRESRGFGFVTM T+ EA+RCVKY     L+  VI VEK 
Sbjct:   44 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETVEEADRCVKYLNRSVLEGRVITVEKF 126
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y6L6|A0A1S2Y6L6_CICAR (serine/arginine-rich splicing factor SR45a OS=Cicer arietinum OX=3827 GN=LOC101510600 PE=4 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.277e-34
Identity = 65/82 (79.27%), Postives = 68/82 (82.93%), Query Frame = 0 
Query:   20 EAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLD-----CFVIMVEK 96
            +AENP   LYV GLSPRITKRELEK+FAAEGKVIDVHLVVDPWTR SRGFGFVTM TL EA+RCVKYLD       VIMVEK
Sbjct:   44 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 125
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A7J7DE52|A0A7J7DE52_TRIWF (Transformer serine/arginine-rich ribonucleoprotein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW07G00110 PE=4 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.573e-33
Identity = 61/82 (74.39%), Postives = 68/82 (82.93%), Query Frame = 0 
Query:   20 EAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLD-----CFVIMVEK 96
            + ENP   LYV GLSPRITKRELEK+FA+EGKV+DVHLVVDPWTRESRGFGFVTM ++ EANRC+KYLD       VIMVEK
Sbjct:   38 DVENPGNNLYVTGLSPRITKRELEKHFASEGKVVDVHLVVDPWTRESRGFGFVTMASVEEANRCIKYLDRSVLEGRVIMVEK 119
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A660KYX5|A0A660KYX5_9ROSI (RRM domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_011636 PE=4 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.443e-33
Identity = 72/115 (62.61%), Postives = 82/115 (71.30%), Query Frame = 0 
Query:    1 MHYGKSL----SRS-----RSRSRSIPQEAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKY-----LDCFVIMVEKLAITL 101
            +H G +L    SRS     R RS S+    ENP   LYV GLSPRITKRELEK+FA+EGKV +VHLVVDPWTRESRGFGFVTM T+ EA+RC+KY     L+  VIMVEK AI L
Sbjct:   41 LHSGPNLVLLYSRSPSPYRRHRSPSV----ENPGNNLYVTGLSPRITKRELEKHFASEGKVTEVHLVVDPWTRESRGFGFVTMGTVEEADRCIKYLNHSVLEGRVIMVEKCAIDL 151
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q84TH4|SR45A_ARATH (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.592e-30
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 0 
Query:   14 SRSIPQEAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLD-----CFVIMVEK 96
            +RS+  +AENP   LYV GLS R+T+R+LE +FA EGKV DVHLV+DPWTRESRGFGF++M ++G+ANRC++ LD       VI VEK
Sbjct:   63 TRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. Araport11
Match: AT1G07350.6 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:2258751-2259586 REVERSE LENGTH=203 | 201606)

HSP 1 Score: 121.709 bits (304), Expect = 3.223e-35
Identity = 64/132 (48.48%), Postives = 89/132 (67.42%), Query Frame = 0 
Query:   14 SRSIPQEAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLD-----CFVIMVEKLA--ITLIIFHNHKFQILYVPSVQLQHLCSGNFDISVIYSFFCF 138
            +RS+  +AENP   LYV GLS R+T+R+LE +FA EGKV DVHLV+DPWTRESRGFGF++M ++G+ANRC++ LD       VI VEK+   IT   F+     +++ P + L +  + +FDI   +SF  F
Sbjct:   33 TRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKVKRLITSDSFYRTIKNMIW-PKLILIYAITRHFDIDFFFSFKIF 163
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. Araport11
Match: AT1G07350.4 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:2258751-2260101 REVERSE LENGTH=233 | 201606)

HSP 1 Score: 121.324 bits (303), Expect = 9.437e-35
Identity = 64/132 (48.48%), Postives = 89/132 (67.42%), Query Frame = 0 
Query:   14 SRSIPQEAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLD-----CFVIMVEKLA--ITLIIFHNHKFQILYVPSVQLQHLCSGNFDISVIYSFFCF 138
            +RS+  +AENP   LYV GLS R+T+R+LE +FA EGKV DVHLV+DPWTRESRGFGF++M ++G+ANRC++ LD       VI VEK+   IT   F+     +++ P + L +  + +FDI   +SF  F
Sbjct:   63 TRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKVKRLITSDSFYRTIKNMIW-PKLILIYAITRHFDIDFFFSFKIF 193
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. Araport11
Match: AT1G07350.3 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:2258816-2259586 REVERSE LENGTH=129 | 201606)

HSP 1 Score: 115.161 bits (287), Expect = 1.684e-33
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 0 
Query:   14 SRSIPQEAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLD-----CFVIMVEK 96
            +RS+  +AENP   LYV GLS R+T+R+LE +FA EGKV DVHLV+DPWTRESRGFGF++M ++G+ANRC++ LD       VI VEK
Sbjct:   33 TRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 120
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. Araport11
Match: AT1G07350.2 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:2258816-2259586 REVERSE LENGTH=129 | 201606)

HSP 1 Score: 115.161 bits (287), Expect = 1.684e-33
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 0 
Query:   14 SRSIPQEAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLD-----CFVIMVEK 96
            +RS+  +AENP   LYV GLS R+T+R+LE +FA EGKV DVHLV+DPWTRESRGFGF++M ++G+ANRC++ LD       VI VEK
Sbjct:   33 TRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 120
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. Araport11
Match: AT1G07350.5 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:2258816-2260101 REVERSE LENGTH=159 | 201606)

HSP 1 Score: 114.005 bits (284), Expect = 9.358e-33
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 0 
Query:   14 SRSIPQEAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLD-----CFVIMVEK 96
            +RS+  +AENP   LYV GLS R+T+R+LE +FA EGKV DVHLV+DPWTRESRGFGF++M ++G+ANRC++ LD       VI VEK
Sbjct:   63 TRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. Araport11
Match: AT1G07350.1 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:2257732-2260101 REVERSE LENGTH=382 | 201606)

HSP 1 Score: 115.931 bits (289), Expect = 2.652e-31
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 0 
Query:   14 SRSIPQEAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLD-----CFVIMVEK 96
            +RS+  +AENP   LYV GLS R+T+R+LE +FA EGKV DVHLV+DPWTRESRGFGF++M ++G+ANRC++ LD       VI VEK
Sbjct:   63 TRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. Araport11
Match: AT4G35785.6 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr4:16953708-16955127 REVERSE LENGTH=207 | 201606)

HSP 1 Score: 89.7373 bits (221), Expect = 1.111e-22
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 0 
Query:   20 EAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLDCFVIMVEKLAITLIIFH 105
            E ENP   LYV GLS R+T ++LE +FA EGKV    LV++P TR SRGF FVTM +L +A RC+KYL+  V+    + +   I H
Sbjct:   66 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERKILH 151
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. Araport11
Match: AT4G35785.3 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr4:16953708-16955127 REVERSE LENGTH=207 | 201606)

HSP 1 Score: 89.7373 bits (221), Expect = 1.111e-22
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 0 
Query:   20 EAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLDCFVIMVEKLAITLIIFH 105
            E ENP   LYV GLS R+T ++LE +FA EGKV    LV++P TR SRGF FVTM +L +A RC+KYL+  V+    + +   I H
Sbjct:   66 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERKILH 151
[Close]
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. Araport11
Match: AT4G35785.5 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr4:16953404-16955127 REVERSE LENGTH=230 | 201606)

HSP 1 Score: 88.9669 bits (219), Expect = 3.021e-22
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 0 
Query:   20 EAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLDCFVIMVEKLAITLIIFH 105
            E ENP   LYV GLS R+T ++LE +FA EGKV    LV++P TR SRGF FVTM +L +A RC+KYL+  V+    + +   I H
Sbjct:   66 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERKILH 151
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BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. Araport11
Match: AT4G35785.1 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr4:16953404-16955127 REVERSE LENGTH=187 | 201606)

HSP 1 Score: 87.4261 bits (215), Expect = 5.446e-22
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 0 
Query:   20 EAENPRKRLYVIGLSPRITKRELEKYFAAEGKVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLDCFVIMVEKLAITLIIFHN 106
            E ENP   LYV GLS R+T ++LE +FA EGKV    LV++P TR SRGF FVTM +L +A RC+KYL+  V+    + +   I H 
Sbjct:   66 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERKILHQ 152
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2K3M5Y6|A0A2K3M5Y6_TRIPR4.504e-3771.28Serine/arginine rich-like protein SR45a (Fragment)... [more]
tr|A0A392MKW5|A0A392MKW5_9FABA6.527e-3772.04Pre-mRNA-splicing factor CWC22-like (Fragment) OS=... [more]
tr|A0A392QNZ8|A0A392QNZ8_9FABA1.417e-3674.42Pre-mRNA-splicing factor CWC22-like (Fragment) OS=... [more]
tr|A0A2K3NRI5|A0A2K3NRI5_TRIPR6.131e-3672.04Serine/arginine rich-like protein SR45a (Fragment)... [more]
tr|A0A444Y6X7|A0A444Y6X7_ARAHY1.999e-3574.39RRM domain-containing protein OS=Arachis hypogaea ... [more]
tr|A0A151SZD6|A0A151SZD6_CAJCA4.170e-3478.05Putative RNA-binding protein C25G10.01 OS=Cajanus ... [more]
tr|A0A3Q0FJ68|A0A3Q0FJ68_VIGRR4.182e-3475.90serine/arginine-rich splicing factor SR45a isoform... [more]
tr|A0A1S2Y6L6|A0A1S2Y6L6_CICAR4.277e-3479.27serine/arginine-rich splicing factor SR45a OS=Cice... [more]
tr|A0A7J7DE52|A0A7J7DE52_TRIWF3.573e-3374.39Transformer serine/arginine-rich ribonucleoprotein... [more]
tr|A0A660KYX5|A0A660KYX5_9ROSI6.443e-3362.61RRM domain-containing protein OS=Carpinus fangiana... [more]
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BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q84TH4|SR45A_ARATH2.592e-3060.23Serine/arginine-rich splicing factor SR45a OS=Arab... [more]
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BLAST of Vfaba.Hedin2.R1.2g184360.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 10
Match NameE-valueIdentityDescription
AT1G07350.63.223e-3548.48| RNA-binding (RRM/RBD/RNP motifs) family protein ... [more]
AT1G07350.49.437e-3548.48| RNA-binding (RRM/RBD/RNP motifs) family protein ... [more]
AT1G07350.31.684e-3360.23| RNA-binding (RRM/RBD/RNP motifs) family protein ... [more]
AT1G07350.21.684e-3360.23| RNA-binding (RRM/RBD/RNP motifs) family protein ... [more]
AT1G07350.59.358e-3360.23| RNA-binding (RRM/RBD/RNP motifs) family protein ... [more]
AT1G07350.12.652e-3160.23| RNA-binding (RRM/RBD/RNP motifs) family protein ... [more]
AT4G35785.61.111e-2250.00| RNA-binding (RRM/RBD/RNP motifs) family protein ... [more]
AT4G35785.31.111e-2250.00| RNA-binding (RRM/RBD/RNP motifs) family protein ... [more]
AT4G35785.53.021e-2250.00| RNA-binding (RRM/RBD/RNP motifs) family protein ... [more]
AT4G35785.15.446e-2249.43| RNA-binding (RRM/RBD/RNP motifs) family protein ... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 28..88
e-value: 3.4E-11
score: 42.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 26..116
score: 12.816166
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..106
e-value: 1.5E-18
score: 69.1
NoneNo IPR availablePANTHERPTHR48034TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATEDcoord: 16..89
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 14..92

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.2g184360.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g184360.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g184360.1; organism=Vicia faba; type=mRNA; length=462bp
ATGCATTATGGTAAGTCTTTGTCCAGATCCAGAAGCCGTTCGAGGAGCAT
ACCACAAGAAGCTGAAAATCCGAGAAAAAGATTGTATGTGATAGGACTGT
CTCCTAGGATTACCAAGAGAGAACTGGAGAAGTATTTTGCTGCTGAAGGA
AAAGTGATAGATGTTCATCTGGTTGTTGATCCATGGACAAGGGAATCCCG
TGGTTTTGGATTTGTGACAATGGTTACTCTTGGAGAAGCTAATCGTTGTG
TGAAGTATCTGGATTGCTTTGTTATCATGGTGGAGAAGCTAGCGATCACT
CTCATCATTTTCCATAATCATAAGTTTCAAATTCTCTATGTTCCCTCTGT
CCAGCTTCAACATCTCTGTTCTGGTAATTTCGACATTTCGGTAATTTACA
GTTTCTTTTGTTTTATTCAACTGAGTTACTGTCAGAATCCTGTGATAACT
TTTGTGAAATAG
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protein sequence of Vfaba.Hedin2.R1.2g184360.1_vfh_v1

>Vfaba.Hedin2.R1.2g184360.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g184360.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g184360.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=153bp
MHYGKSLSRSRSRSRSIPQEAENPRKRLYVIGLSPRITKRELEKYFAAEG
KVIDVHLVVDPWTRESRGFGFVTMVTLGEANRCVKYLDCFVIMVEKLAIT
LIIFHNHKFQILYVPSVQLQHLCSGNFDISVIYSFFCFIQLSYCQNPVIT
FVK
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mRNA from alignment at chr2:1162175916..1162176377-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.2g184360.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g184360.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g184360.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1162175916..1162176377- (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding