Vfaba.Hedin2.R1.2g269640.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.2g269640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3DVT5|A0A1S3DVT5_CICAR (uncharacterized protein LOC101510247 OS=Cicer arietinum OX=3827 GN=LOC101510247 PE=4 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 2.089e-39 Identity = 112/253 (44.27%), Postives = 138/253 (54.55%), Query Frame = 0 Query: 1 MFRSRARWLRFVVQFKLFPTTSLCNNSAQRSSFYTSAKNGNNINNKDIITDER---------------------------FDFHLVQFFLPACLP------WAQYARYEIRTMEADVEQKRKKKKKQTARREEQLPGVEQNKARITAGVLIERTSIKDVEQKWKKKEEGEEAKEIEKELELNPPEEKEANSQLSEVIGNEKKPLNSSAPMNTSGGKDN--SNSELGEESEGLLATPNSSLQSPTSQGQSGSAS 218 M+ S RWLRF VQFKLFPTT CN S Q SF T A N N N+ I+TDER FDFHLVQFF AC+P AQYARYEIR ME +VEQKRKKK ++ A+ E+ +E N E K Q + KE ++ +E KE+ + ++ +N ++V G+EKKP+N SAP NTS + S EL EES+G +ATPNSSLQ PT Q QSG AS Sbjct: 1 MYGSGGRWLRFFVQFKLFPTTPFCNKSVQNRSFCTPANNNTNNNS--IVTDERYRQLENLDMMTAAKILFTDPPKKKKFGFDFHLVQFFF-ACMPSLAVYLVAQYARYEIRKMEGEVEQKRKKKAEEEAKEREK--ELELNPP--------EEKETKSDSQLSEVKERLDKLEETVKEIAVVTKKQSSSNIDTNQVTGDEKKPINFSAPTNTSCSSASLKSKPELDEESKGSVATPNSSLQDPTGQNQSGRAS 240
BLAST of Vfaba.Hedin2.R1.2g269640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6P2X6|A0A2Z6P2X6_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_49440 PE=4 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.461e-38 Identity = 107/257 (41.63%), Postives = 139/257 (54.09%), Query Frame = 0 Query: 1 MFRSRARWLRFVVQFKLFPTTSLCNNSAQRSSFYTSAKNGNNINNKDIITDER---------------------------FDFHLVQFFLPACLP------WAQYARYEIRTM---EADVEQKRKKKKKQTARREEQLPGVEQNKARITAGVLIERTSIKDVEQKWKKKEEGEEAKEIEKELELNPPEEKEANSQLSEVIGNEKKPLNSSAPMNTSGGKDN---SNSELGEESEGLLATPNSSLQSPTSQGQSGSAS 218 MF SR R LR VQFKLFPTTS+CN SA RSSF TSAKN N NNK I+TDER FDFHLVQFF AC+P AQYARYEIR M + ++K+++++ + +E +L E+N+A+ A + +V+++ K E E KE+ ++ +N ++V G K+P N SA NTSGGKDN S E EES+G + TPNSSLQ Q QS +S Sbjct: 1 MFGSRGRLLRLFVQFKLFPTTSICNKSAPRSSFCTSAKNNN--NNKHIVTDERYQQLENLDMMTAAKILFTDPPKKKKFGFDFHLVQFFF-ACMPSLAVYLVAQYARYEIRRMEGEVEEKKKKKEEEEAKEREKELELNPPEENEAKSDA-------QLSEVKERLDKLE------ETVKEITAVTKKQSSSNMDTNQVTGEAKEPQNKSAQSNTSGGKDNSVKSKPESDEESKGSVVTPNSSLQDTKGQNQSEKSS 241
BLAST of Vfaba.Hedin2.R1.2g269640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NU88|A0A2K3NU88_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g003053 PE=4 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 8.881e-37 Identity = 115/257 (44.75%), Postives = 147/257 (57.20%), Query Frame = 0 Query: 1 MFRSRARWLRFVVQFKLFPTTSLCNNSAQRSSFYTSAKNGNNINNKDIITDER---------------------------FDFHLVQFFLPACLP------WAQYARYEIRTMEADVEQKRKKKKKQTARREEQLPGV---EQNKARITAGVLIERTSIKDVEQKWKKKEEGEEAKEIEKELELNPPEEKEANSQLSEVIGNEKKPLNSSAPMNTSGGKDN---SNSELGEESEGLLATPNSSLQSPTSQGQSGSAS 218 M SR RWLR VQFKLFPTTS+CN SAQRSSF TSAKN NN N+K I+ DER FDFHLVQFF AC+P AQYARYEIR ME +VE+K+KKK+++ A+ E+ + ++N+A+ A + +V+++ K E E KEI + ++ +N ++V G K P N SAP NTSGGKDN S EL EES+G + TP+SSLQ T Q QS +S Sbjct: 1 MSGSRGRWLRLFVQFKLFPTTSICNKSAQRSSFCTSAKNNNN-NSKGIVIDERYQQLENLDMITAAKILFTDPPKKKKFGFDFHLVQFFF-ACMPSLAVYLVAQYARYEIRRMEGEVEEKKKKKEEEEAKEREKELELNPPQENEAKSDA-------QLSEVKERLDKLE--ETVKEIAAK------KQSSSNIHTNQVTGEAKLPQNVSAPSNTSGGKDNSLKSKPELDEESKGSVVTPHSSLQDTTGQDQSEKSS 240
BLAST of Vfaba.Hedin2.R1.2g269640.1 vs. UniProtKB/TrEMBL
Match: tr|G7LCW9|G7LCW9_MEDTR (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=11409846 PE=4 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 8.492e-31 Identity = 109/260 (41.92%), Postives = 136/260 (52.31%), Query Frame = 0 Query: 1 MFRSRARWLRFVVQFKLFPTTSLCNNSAQRSSFYTSAK-NGNNINNKDIITDER---------------------------FDFHLVQFFLPACLP------WAQYARYEIRTM----EADVEQKRKKKKKQTARREEQLPGVEQNKARITAGVLIERTSIKDVEQKWKKKEEGEEAKEIEKELELNPPEEKEANSQLSEVIGNEKKPLNSSAPMNTSG-------------GKDN---SNSELGEESEGLLATPNSSLQ 206 MF S RWLRFV QFKL+PTTSLCN SAQRSSF TSAK NN NNK IITDER FDFHLVQFF AC+P AQYARYEIR M E +QK +++ K+ + E P E++K Q + KE E+ +E KE+ + ++ +N ++V G+EKK +NSSAP NTSG GKDN S +EL EES+G + TP+S L+ Sbjct: 1 MFGSGRRWLRFV-QFKLYPTTSLCNKSAQRSSFCTSAKNINNNNNNKVIITDERYQQLKNLNMMTALKMLFTDPPKKKKFGFDFHLVQFFF-ACMPSLAVYLVAQYARYEIRRMEAEVEEKKKQKEEEEAKEKEKELELYPPEEKDKPD---------------PQLSEMKERLEKLEETVKEIAVVKKKQSSSNVDTNQVTGDEKKAINSSAPSNTSGGSVTIKPVEHNSVGKDNSLKSRTELDEESKGSVTTPSSFLR 243
BLAST of Vfaba.Hedin2.R1.2g269640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396HYA6|A0A396HYA6_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0001061 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 9.445e-26 Identity = 107/260 (41.15%), Postives = 140/260 (53.85%), Query Frame = 0 Query: 1 MFRSRARWLRFVVQFKLFPTTSLCNNSAQRSSFYTSAKNGN------------------NINN----KDIITDE------RFDFHLVQFFLPACLP------WAQYARYEIRTMEADVEQKRKKKKKQTARREEQL----PGVEQNKARITAGVLIERTSIKDVEQKWKKKEEGEEAKEIEKELELNPPEEKEANSQLSEVIGNEKKPLNSSAPMNTSG-------------GKDN---SNSELGEESEGLLATPNSSLQ 206 MF S RWLRFV QFKL+PTTSLCN SAQRSSF TSAKN N N+N K + TD FDFHLVQFF AC+P AQY RY IR MEA+VE+K+K+K+++ A+ +E+ P E++K Q + KE E+ +E KE+ + ++ +N ++V G+EKK +NSSAP NTSG GKDN S +EL EES+G + TP+S L+ Sbjct: 1 MFGSGRRWLRFV-QFKLYPTTSLCNKSAQRSSFCTSAKNINNNNNNKVVITDERYQQLENLNMMTALKMLFTDPPKKKKFGFDFHLVQFFF-ACMPSLAVYLVAQYTRYAIRRMEAEVEEKKKQKEEEEAKEKEKELELNPPEEKDKPD---------------PQLSEMKERLEKLEETVKEIAVVKKKQSSSNIDTNQVTGDEKKAINSSAPSNTSGGSVTIKPVEHNSVGKDNSLKSRTELDEESKGSVTTPSSFLR 243
BLAST of Vfaba.Hedin2.R1.2g269640.1 vs. UniProtKB/TrEMBL
Match: tr|G7JD83|G7JD83_MEDTR (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=11425281 PE=4 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 5.755e-25 Identity = 106/260 (40.77%), Postives = 140/260 (53.85%), Query Frame = 0 Query: 1 MFRSRARWLRFVVQFKLFPTTSLCNNSAQRSSFYTSAKNGN------------------NINN----KDIITDE------RFDFHLVQFFLPACLP------WAQYARYEIRTMEADVEQKRKKKKKQTARREEQL----PGVEQNKARITAGVLIERTSIKDVEQKWKKKEEGEEAKEIEKELELNPPEEKEANSQLSEVIGNEKKPLNSSAPMNTSG-------------GKDN---SNSELGEESEGLLATPNSSLQ 206 MF S RWLR +VQFKL+PTTSLCN SAQRSSF TSAKN N N+N K + TD FDFHLVQFF AC+P AQY RY IR MEA+VE+K+K+K+++ A+ +E+ P E++K Q + KE E+ +E KE+ + ++ +N ++V G+EKK +NSSAP NTSG GKDN S +EL EES+G + TP+S L+ Sbjct: 1 MFGSGRRWLR-LVQFKLYPTTSLCNKSAQRSSFCTSAKNINNNNNNKVVITDERYQQLENLNMMTALKMLFTDPPKKKKFGFDFHLVQFFF-ACMPSLAVYLVAQYTRYAIRRMEAEVEEKKKQKEEEEAKEKEKELELNPPEEKDKPD---------------PQLSEMKERLEKLEETVKEIAVVKKKQSSSNIDTNQVTGDEKKAINSSAPSNTSGGSVTIKPVEHNSVGKDNSLKSRTELDEESKGSVTTPSSFLR 243
BLAST of Vfaba.Hedin2.R1.2g269640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MLC2|A0A4D6MLC2_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG8g164 PE=4 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.191e-23 Identity = 100/273 (36.63%), Postives = 139/273 (50.92%), Query Frame = 0 Query: 1 MFRSRARWLRFVVQFKLFPTTSLCNNSAQRSSFYTSAKNGNNI-NNKDIITDER---------------------------FDFHLVQFFLPACLP------WAQYARYEIRTMEADVEQKRKKKKKQTARREEQLPGVEQNKARITAGVLIERTSIKDVEQKWKK-----KEEGEEAKEIEKELELNPPEEKEANSQLSEVIGNEKKPLNSS----APMNTSGGK-DN-----------SNSELGEESEGLLATPNSSLQSPTSQGQSGSAS 218 MFR RWLR +FK F TS +N+ R SF TS K+ NN +NK+ + DER FDFHLVQFF ACLP AQYARYE+RTMEADVE+K+K+K+++ A+ +E+ +E ++ E+K+ K E+ +E KE+ + ++ +N ++V NE+K L+SS +P +++ K DN S EL EES+GL ATPN S+Q P Q QSG AS Sbjct: 1 MFRGGVRWLRSSERFK-FLATSFSSNARTRYSFCTSTKSSNNNGDNKNTVVDERYRQLENLDMVTAAKILFTDPPKKRKFGFDFHLVQFFF-ACLPSLAVYLVAQYARYEMRTMEADVEKKKKQKEEEEAKEKEK---------------EMELNPPEEKEEKYDPELSEVKVRLEKLEEAVKEIVVETKKQSSSNLAKNQVTDNEEKNLSSSPKDTSPTDSASNKADNEDHVSKHNSPKSKPELREESKGLDATPNYSVQDPKGQSQSGGAS 256
BLAST of Vfaba.Hedin2.R1.2g269640.1 vs. UniProtKB/TrEMBL
Match: tr|V7AUA1|V7AUA1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G159800g PE=4 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 7.503e-22 Identity = 95/272 (34.93%), Postives = 130/272 (47.79%), Query Frame = 0 Query: 1 MFRSRARWLRFVVQFKLFPTTSLCNNSAQRSSFYTSAKNGN----------------NINNKDIITDER-------------FDFHLVQFFLPACLP------WAQYARYEIRTMEADV---EQKRKKKKKQTARREEQLPGVEQNKARITAGVLIERTSIKDVEQKWKKKEEGEEAKEIEKELELNPPEEKEANSQLSEVIGNEKKPLNSSAPMNTSG--------------GKDN---SNSELGEESEGLLATPNSSLQSPTSQGQSGSA 217 MF ARWLR +F+ F TS N+ R SF TS +N N + N D++T + FDFHLVQFF ACLP AQYARYEIR MEADV + +++++ + +E +L E+ + + + DV+ + +K EE KE+ + ++ +N ++V NEKK LNSS+P +TS GK N S EL E+S+G ATPNSSLQ P Q QSG A Sbjct: 1 MFGGGARWLRSSERFRFF-ATSFSTNARTRYSFCTSTRNSNNNGDNKNIVVDDERYRQLENLDMMTAAKILFTDPPKKKKFGFDFHLVQFFF-ACLPSLAVYLVAQYARYEIRKMEADVEKKRKLKEEEEAKEKEKEMELNPPEEKEDKFDP-------QLSDVKVRLEKLEEA------VKEIVVGTKKQSSSNLDKNQVPDNEKKHLNSSSPKDTSPTDSASDRADNEDHFGKHNPSKSKPELCEDSKGSDATPNSSLQDPKGQSQSGGA 257
BLAST of Vfaba.Hedin2.R1.2g269640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3T0H3|A0A0S3T0H3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G228400 PE=4 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 5.588e-19 Identity = 101/272 (37.13%), Postives = 132/272 (48.53%), Query Frame = 0 Query: 1 MFRSRARWLRFVVQFKLFPTTSLCNNSAQRSSFYTSAKNGNNINNKD-IITDER---------------------------FDFHLVQFFLPACLP------WAQYARYEIRTMEADVEQKRKKKKKQTARREE---QLPGVEQNKARITAGVLIERTSIKDVEQKWKKKEEGEEAKEIEKELELNPPEEKEANSQLSEVIGNEKKPLNSSAPMNTSG--------------GKDN---SNSELGEESEGLLATPNSSLQSPTSQGQSGSAS 218 MF RWLR +FK F S +NS R SF T+ KN NN + I+ DER FDFHLVQFF ACLP AQYARYEIR MEADVE+K+K+K+++ A+ +E +L E+ + + + R ++ +E E KE+ + ++ +N ++V NEKK L SS+P NTS GK N S EL EES+G+ ATPNSSLQ P Q QSG S Sbjct: 1 MFGGGVRWLRSSERFK-FLAKSFSSNSRTRYSFCTTTKNSNNNGDNKNIVADERYRQLENLDMVTAAKILFTDPPKKKKFGFDFHLVQFFF-ACLPSLAVYLVAQYARYEIRKMEADVEKKKKQKEEEEAKEKEKEMELNPPEEKEEKYDPQLSEVRVRLEKLE-------------EAVKEIVVGTEKQSSSNLAKNQVTDNEKKQL-SSSPKNTSPTDSASNKADNEDNFGKHNSPKSKPELREESKGIDATPNSSLQDPKGQSQSGGDS 256
BLAST of Vfaba.Hedin2.R1.2g269640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9T9L7|A0A0L9T9L7_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan406s006200 PE=4 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 5.588e-19 Identity = 101/272 (37.13%), Postives = 132/272 (48.53%), Query Frame = 0 Query: 1 MFRSRARWLRFVVQFKLFPTTSLCNNSAQRSSFYTSAKNGNNINNKD-IITDER---------------------------FDFHLVQFFLPACLP------WAQYARYEIRTMEADVEQKRKKKKKQTARREE---QLPGVEQNKARITAGVLIERTSIKDVEQKWKKKEEGEEAKEIEKELELNPPEEKEANSQLSEVIGNEKKPLNSSAPMNTSG--------------GKDN---SNSELGEESEGLLATPNSSLQSPTSQGQSGSAS 218 MF RWLR +FK F S +NS R SF T+ KN NN + I+ DER FDFHLVQFF ACLP AQYARYEIR MEADVE+K+K+K+++ A+ +E +L E+ + + + R ++ +E E KE+ + ++ +N ++V NEKK L SS+P NTS GK N S EL EES+G+ ATPNSSLQ P Q QSG S Sbjct: 1 MFGGGVRWLRSSERFK-FLAKSFSSNSRTRYSFCTTTKNSNNNGDNKNIVADERYRQLENLDMVTAAKILFTDPPKKKKFGFDFHLVQFFF-ACLPSLAVYLVAQYARYEIRKMEADVEKKKKQKEEEEAKEKEKEMELNPPEEKEEKYDPQLSEVRVRLEKLE-------------EAVKEIVVGTEKQSSSNLAKNQVTDNEKKQL-SSSPKNTSPTDSASNKADNEDNFGKHNSPKSKPELREESKGIDATPNSSLQDPKGQSQSGGDS 256 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.2g269640.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.2g269640.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.2g269640.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 0
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.2g269640.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g269640.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g269640.1; organism=Vicia faba; type=mRNA; length=657bpback to top protein sequence of Vfaba.Hedin2.R1.2g269640.1_vfh_v1 >Vfaba.Hedin2.R1.2g269640.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g269640.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g269640.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=218bpback to top mRNA from alignment at chr2:1682992388..1682997185+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.2g269640.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g269640.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g269640.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1682992388..1682997185+ (Vicia fababack to top |