Vfaba.Hedin2.R1.3g079120.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.3g079120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XWD4|A0A1S2XWD4_CICAR (uncharacterized protein LOC101509595 OS=Cicer arietinum OX=3827 GN=LOC101509595 PE=4 SV=1) HSP 1 Score: 338.961 bits (868), Expect = 8.921e-114 Identity = 170/200 (85.00%), Postives = 176/200 (88.00%), Query Frame = 0 Query: 2 QIKEAISNLPVATEEDDTEEAMSLKDITVTVDEGVQSLATNEENKGVEEADPFGLDALIPESTKKSAK----NDA---IRKEEEEETKRILKLQRKALITCLEIAARRYKTPWCQTVIDILVKHASDKVARFTAHQRDAVEKLWASIREQQTRRRQGKSVNGKLDVNAFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 194 QIKEAISNLPVAT+EDDTEEAMSL+D V VDEG Q+L TNE N GVEEADPFGLDALIPESTKK K ND IRKE+EEETKR LKLQRKALI CLEIAARRYKTPWCQTVIDILVKHA D VARFTAHQRDAVEKLWASIREQQ RR+QGKSV GKLDVNAFEWLQQKY+TEKISIRHSVG SGDRRATQWLG Sbjct: 200 QIKEAISNLPVATKEDDTEEAMSLEDRKVMVDEGGQTLPTNENN-GVEEADPFGLDALIPESTKKGEKYKEKNDPAMTIRKEDEEETKRFLKLQRKALIICLEIAARRYKTPWCQTVIDILVKHAFDNVARFTAHQRDAVEKLWASIREQQMRRKQGKSVTGKLDVNAFEWLQQKYATEKISIRHSVGASGDRRATQWLG 398
BLAST of Vfaba.Hedin2.R1.3g079120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NXN8|A0A2K3NXN8_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g004301 PE=4 SV=1) HSP 1 Score: 338.576 bits (867), Expect = 1.177e-113 Identity = 168/200 (84.00%), Postives = 178/200 (89.00%), Query Frame = 0 Query: 2 QIKEAISNLPVATEEDDTEEAMSLKDITVTVDEGVQSLATNEENKGVEEADPFGLDALIPESTKKS----AKNDA---IRKEEEEETKRILKLQRKALITCLEIAARRYKTPWCQTVIDILVKHASDKVARFTAHQRDAVEKLWASIREQQTRRRQGKSVNGKLDVNAFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 194 QIKEAISNLPVATEEDDTEEA+SLKD TV VDEG Q+L NE+N G EEADPFGLD+L+ STKK AKND+ +RKE+EEETKR L+LQRKALITCLEIAARRYKTPWCQTVIDILVKHA D VARFTAHQRDAV KLWASI EQQTRR+QGKSVNGKLDVNAFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG Sbjct: 191 QIKEAISNLPVATEEDDTEEAISLKDSTVMVDEGGQTLPPNEDNNGAEEADPFGLDSLL--STKKGEKFKAKNDSAMKLRKEDEEETKRFLQLQRKALITCLEIAARRYKTPWCQTVIDILVKHAFDNVARFTAHQRDAVGKLWASILEQQTRRKQGKSVNGKLDVNAFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 388
BLAST of Vfaba.Hedin2.R1.3g079120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LTB3|A0A2Z6LTB3_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_33000 PE=4 SV=1) HSP 1 Score: 336.265 bits (861), Expect = 5.435e-112 Identity = 169/200 (84.50%), Postives = 177/200 (88.50%), Query Frame = 0 Query: 2 QIKEAISNLPVATEEDDTEEAMSLKDITVTVDEGVQSLATNEENKGVEEADPFGLDALIPESTKK----SAKNDA---IRKEEEEETKRILKLQRKALITCLEIAARRYKTPWCQTVIDILVKHASDKVARFTAHQRDAVEKLWASIREQQTRRRQGKSVNGKLDVNAFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 194 QIKEAISNLPVATEEDDTEEA+SLKD TV VDEG Q+L NE+N GVEEADPFGLD L+ STKK AKND+ IRKE+EEETKR L+LQRKALITCLEIAARRYKTPWCQTVIDILVKHA D VARFTAHQRDAV KLWASI EQQTRR+QGKSVNGKLDVNAFEWLQ KYSTEKISIRHSVGGSGDRRATQWLG Sbjct: 246 QIKEAISNLPVATEEDDTEEAISLKDSTVMVDEGGQTLPPNEDNNGVEEADPFGLDTLL--STKKEEKFKAKNDSAMKIRKEDEEETKRFLQLQRKALITCLEIAARRYKTPWCQTVIDILVKHAFDNVARFTAHQRDAVGKLWASILEQQTRRKQGKSVNGKLDVNAFEWLQTKYSTEKISIRHSVGGSGDRRATQWLG 443
BLAST of Vfaba.Hedin2.R1.3g079120.1 vs. UniProtKB/TrEMBL
Match: tr|G7I676|G7I676_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11425083 PE=4 SV=2) HSP 1 Score: 327.02 bits (837), Expect = 4.907e-109 Identity = 168/200 (84.00%), Postives = 175/200 (87.50%), Query Frame = 0 Query: 2 QIKEAISNLPVATEEDDTEEAMSLKDITVTVDEGVQSLATNEENKGVEEADPFGLDALIPESTKKS----AKNDA---IRKEEEEETKRILKLQRKALITCLEIAARRYKTPWCQTVIDILVKHASDKVARFTAHQRDAVEKLWASIREQQTRRRQGKSVNGKLDVNAFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 194 QIKEAISNLPVATEEDDTEEA+SL D TV DEG Q+ + NEEN +EEADPFGLD+LIP STKK KNDA IRKEEEEETKR L+LQRKALITCLEIAARRYKTPWCQTVIDILVKHA D VARFTAHQRDAV KLWASI EQQTRR+QGKSVNGKLDVN FEWLQQKYSTEKISIRHSVGGSGDRRATQWLG Sbjct: 196 QIKEAISNLPVATEEDDTEEAISLNDGTVMADEGGQT-SPNEENNALEEADPFGLDSLIPGSTKKGEKFKGKNDAAMKIRKEEEEETKRFLQLQRKALITCLEIAARRYKTPWCQTVIDILVKHAVDNVARFTAHQRDAVRKLWASILEQQTRRKQGKSVNGKLDVNGFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 394
BLAST of Vfaba.Hedin2.R1.3g079120.1 vs. UniProtKB/TrEMBL
Match: tr|I3S487|I3S487_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1) HSP 1 Score: 327.02 bits (837), Expect = 5.015e-109 Identity = 168/200 (84.00%), Postives = 175/200 (87.50%), Query Frame = 0 Query: 2 QIKEAISNLPVATEEDDTEEAMSLKDITVTVDEGVQSLATNEENKGVEEADPFGLDALIPESTKKS----AKNDA---IRKEEEEETKRILKLQRKALITCLEIAARRYKTPWCQTVIDILVKHASDKVARFTAHQRDAVEKLWASIREQQTRRRQGKSVNGKLDVNAFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 194 QIKEAISNLPVATEEDDTEEA+SL D TV DEG Q+ + NEEN +EEADPFGLD+LIP STKK KNDA IRKEEEEETKR L+LQRKALITCLEIAARRYKTPWCQTVIDILVKHA D VARFTAHQRDAV KLWASI EQQTRR+QGKSVNGKLDVN FEWLQQKYSTEKISIRHSVGGSGDRRATQWLG Sbjct: 196 QIKEAISNLPVATEEDDTEEAISLNDGTVMADEGGQT-SPNEENNALEEADPFGLDSLIPGSTKKGEKFKGKNDAAMKIRKEEEEETKRFLQLQRKALITCLEIAARRYKTPWCQTVIDILVKHAVDNVARFTAHQRDAVRKLWASILEQQTRRKQGKSVNGKLDVNGFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 394
BLAST of Vfaba.Hedin2.R1.3g079120.1 vs. UniProtKB/TrEMBL
Match: tr|G7I677|G7I677_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11425083 PE=4 SV=1) HSP 1 Score: 326.635 bits (836), Expect = 6.671e-109 Identity = 168/200 (84.00%), Postives = 175/200 (87.50%), Query Frame = 0 Query: 2 QIKEAISNLPVATEEDDTEEAMSLKDITVTVDEGVQSLATNEENKGVEEADPFGLDALIPESTKKS----AKNDA---IRKEEEEETKRILKLQRKALITCLEIAARRYKTPWCQTVIDILVKHASDKVARFTAHQRDAVEKLWASIREQQTRRRQGKSVNGKLDVNAFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 194 QIKEAISNLPVATEEDDTEEA+SL D TV DEG Q+ + NEEN +EEADPFGLD+LIP STKK KNDA IRKEEEEETKR L+LQRKALITCLEIAARRYKTPWCQTVIDILVKHA D VARFTAHQRDAV KLWASI EQQTRR+QGKSVNGKLDVN FEWLQQKYSTEKISIRHSVGGSGDRRATQWLG Sbjct: 194 QIKEAISNLPVATEEDDTEEAISLNDGTVMADEGGQT-SPNEENNALEEADPFGLDSLIPGSTKKGEKFKGKNDAAMKIRKEEEEETKRFLQLQRKALITCLEIAARRYKTPWCQTVIDILVKHAVDNVARFTAHQRDAVRKLWASILEQQTRRKQGKSVNGKLDVNGFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 392
BLAST of Vfaba.Hedin2.R1.3g079120.1 vs. UniProtKB/TrEMBL
Match: tr|I3SU89|I3SU89_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1) HSP 1 Score: 319.316 bits (817), Expect = 1.857e-108 Identity = 167/200 (83.50%), Postives = 175/200 (87.50%), Query Frame = 0 Query: 2 QIKEAISNLPVATEEDDTEEAMSLKDITVTVDEGVQSLATNEENKGVEEADPFGLDALIPESTKKS----AKNDA---IRKEEEEETKRILKLQRKALITCLEIAARRYKTPWCQTVIDILVKHASDKVARFTAHQRDAVEKLWASIREQQTRRRQGKSVNGKLDVNAFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 194 QIKEAISNLPVATEEDDTEEA+SL D TV DEG Q+ + NEEN +EEADPFGLD+LIP STKK KNDA IRKEEEEETKR L+LQRKALITCLEIAARRY+TPWCQTVIDILVKHA D VARFTAHQRDAV KLWASI EQQTRR+QGKSVNGKLDVN FEWLQQKYSTEKISIRHSVGGSGDRRATQWLG Sbjct: 32 QIKEAISNLPVATEEDDTEEAISLNDGTVMADEGGQT-SPNEENNALEEADPFGLDSLIPGSTKKGEKFKGKNDAAMKIRKEEEEETKRFLQLQRKALITCLEIAARRYRTPWCQTVIDILVKHAVDNVARFTAHQRDAVRKLWASILEQQTRRKQGKSVNGKLDVNGFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 230
BLAST of Vfaba.Hedin2.R1.3g079120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SPY7|A0A0S3SPY7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G157500 PE=4 SV=1) HSP 1 Score: 302.368 bits (773), Expect = 2.721e-99 Identity = 153/199 (76.88%), Postives = 169/199 (84.92%), Query Frame = 0 Query: 2 QIKEAISNLPVATEEDDTEEAMSLKDITVTVDEGVQSLATNEENKGVEEADPFGLDALIPESTKK----SAKNDAIR--KEEEEETKRILKLQRKALITCLEIAARRYKTPWCQTVIDILVKHASDKVARFTAHQRDAVEKLWASIREQQTRRRQGKSVNGKLDVNAFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 194 +IKE IS+LPVATE++D EE SLKD TV DEG ++ AT+ +N G +EADPFGLDALIP STKK AKN+A +E+EEETKR LK QR+ALITCLEIAARRYKTPWCQTVIDILVKHASD V+RFTA QRDAV KLWASIREQQTRR+QGKSVNGKLDVNAFEWLQQKY+ EKISIRHSVG SGDRRA QWLG Sbjct: 199 KIKEIISSLPVATEQEDAEEEKSLKDGTVIADEGGKTPATDNDNDG-KEADPFGLDALIPNSTKKVEKLKAKNEATVEIREDEEETKRFLKSQREALITCLEIAARRYKTPWCQTVIDILVKHASDNVSRFTASQRDAVGKLWASIREQQTRRKQGKSVNGKLDVNAFEWLQQKYANEKISIRHSVGASGDRRAQQWLG 396
BLAST of Vfaba.Hedin2.R1.3g079120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9THW3|A0A0L9THW3_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan845s003500 PE=4 SV=1) HSP 1 Score: 302.368 bits (773), Expect = 2.721e-99 Identity = 153/199 (76.88%), Postives = 169/199 (84.92%), Query Frame = 0 Query: 2 QIKEAISNLPVATEEDDTEEAMSLKDITVTVDEGVQSLATNEENKGVEEADPFGLDALIPESTKK----SAKNDAIR--KEEEEETKRILKLQRKALITCLEIAARRYKTPWCQTVIDILVKHASDKVARFTAHQRDAVEKLWASIREQQTRRRQGKSVNGKLDVNAFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 194 +IKE IS+LPVATE++D EE SLKD TV DEG ++ AT+ +N G +EADPFGLDALIP STKK AKN+A +E+EEETKR LK QR+ALITCLEIAARRYKTPWCQTVIDILVKHASD V+RFTA QRDAV KLWASIREQQTRR+QGKSVNGKLDVNAFEWLQQKY+ EKISIRHSVG SGDRRA QWLG Sbjct: 199 KIKEIISSLPVATEQEDAEEEKSLKDGTVIADEGGKTPATDNDNDG-KEADPFGLDALIPNSTKKVEKLKAKNEATVEIREDEEETKRFLKSQREALITCLEIAARRYKTPWCQTVIDILVKHASDNVSRFTASQRDAVGKLWASIREQQTRRKQGKSVNGKLDVNAFEWLQQKYANEKISIRHSVGASGDRRAQQWLG 396
BLAST of Vfaba.Hedin2.R1.3g079120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371E349|A0A371E349_MUCPR (Uncharacterized protein OS=Mucuna pruriens OX=157652 GN=CR513_61396 PE=4 SV=1) HSP 1 Score: 300.827 bits (769), Expect = 9.304e-99 Identity = 162/200 (81.00%), Postives = 173/200 (86.50%), Query Frame = 0 Query: 2 QIKEAISNLPVATEEDDTEEAMSLKDITVTVDEGVQSLATNEENKGVEEADPFGLDALIPESTKKS----AKNDA---IRKEEEEETKRILKLQRKALITCLEIAARRYKTPWCQTVIDILVKHASDKVARFTAHQRDAVEKLWASIREQQTRRRQGKSVNGKLDVNAFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 194 QIKEAISNLPVATEE+D EEA SL D TVT DEG Q+ AT+++N G EEADPFGLDALIP STKK AKN+A IRKE EEET+R LK QR+ALITCLEIAARRYKTPWCQTVIDILVKHA D VARFT QRDAV KLWASIREQQTRR+QGKSVNGKLDVNAFEWLQQKY++EKISIRHSVGGSGDRRA QWLG Sbjct: 199 QIKEAISNLPVATEEEDAEEAKSLIDSTVTADEGGQTPATDKDNDG-EEADPFGLDALIPRSTKKGEKLMAKNEAAVKIRKENEEETERFLKSQREALITCLEIAARRYKTPWCQTVIDILVKHAFDNVARFTTRQRDAVGKLWASIREQQTRRKQGKSVNGKLDVNAFEWLQQKYASEKISIRHSVGGSGDRRAQQWLG 397
BLAST of Vfaba.Hedin2.R1.3g079120.1 vs. Araport11
Match: AT3G04560.1 (| nucleolar/coiled-body phosphoprotein | Chr3:1227506-1229338 REVERSE LENGTH=417 | 201606) HSP 1 Score: 233.032 bits (593), Expect = 1.569e-75 Identity = 128/203 (63.05%), Postives = 151/203 (74.38%), Query Frame = 0 Query: 2 QIKEAISNLPVATEEDDTEEAMSLKDITVTVDEG-------VQSLATNEENKGVEEADPFGLDALIPESTKKSAKNDAIRKEEE---EETKRILKLQRKALITCLEIAARRYKTPWCQTVIDILVKHASDKVARFTAHQRDAVEKLWASIREQQTRRRQGKSVNGKLDVNAFEWLQQKYSTEKISIRHSVGGSGDRRATQWLG 194 +IKEAIS+LPV+TEEDD EEA +L++ V D G V A+ +N+ VE +DPFGLDA IP S KK+ K R E+ EE KR L+ +R+ALITCLEIAARRYK PWCQTVIDILVKHA + V+RFT+ QR AVEKLWAS+REQ RR+QGKSV GKLDV AFE LQ KY+ EK+SIR SVG SG+RRA QWLG Sbjct: 217 RIKEAISDLPVSTEEDDVEEAAALEEAAVK-DNGDGQTTQDVAEAASAGDNEAVE-SDPFGLDAWIPSSGKKNGKTKIKRTNEDPDAEENKRFLRSKREALITCLEIAARRYKVPWCQTVIDILVKHAFENVSRFTSQQRQAVEKLWASVREQHLRRKQGKSVTGKLDVTAFESLQDKYANEKMSIRSSVGASGERRAQQWLG 417 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.3g079120.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.3g079120.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.3g079120.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.3g079120.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g079120.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g079120.1; organism=Vicia faba; type=mRNA; length=585bpback to top protein sequence of Vfaba.Hedin2.R1.3g079120.1_vfh_v1 >Vfaba.Hedin2.R1.3g079120.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g079120.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g079120.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=194bpback to top mRNA from alignment at chr3:492105223..492105900+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.3g079120.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g079120.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g079120.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:492105223..492105900+ (Vicia fababack to top |