Vfaba.Hedin2.R1.5g104560.2

Transcript Overview


Name	Vfaba.Hedin2.R1.5g104560.2
Unique Name	Vfaba.Hedin2.R1.5g104560.2_vfh_v1
Type	mRNA
Organism	Vicia faba (Faba bean)
Sequence length	435

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr5	chromosome	chr5:722633227..722636163 +	Vicia faba inbred line Hedin/2 genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vicia faba inbred line Hedin/2 genome v1.0	2023-05-02
InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins	2023-05-12
Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL	2023-05-12
Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot	2023-05-12
Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11	2023-05-12

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
vfhzwsR463	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
ccvfhL0536	Cajanus cajan Asha genome v1.0	Cajanus cajan
ccvfhL0786	Cajanus cajan Asha genome v1.0	Cajanus cajan
psvfhL239	Pisum sativum Cameor genome v1a	Pisum sativum
tifvfhL361	Vicia faba cv. Tiffany genome v1.0	Vicia faba
vfhvuR538	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vfhvrvR574	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vfhvuaR486	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vfhvssR615	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vfhvssR616	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vfhvumR632	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vfhvumR679	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vfhvvaR598	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vfhvvaR617	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vfhvstR637	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vfhvstR676	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vfhvstR678	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vfhvunR495	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
XM_058886428.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
rna-XM_014639952.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
jg33010.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
jg32979.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Vfaba.Hedin2.R1.5g104560	Vfaba.Hedin2.R1.5g104560_vfh_v1	Vicia faba	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Hedin2.R1.5g104560.2_vfh_v1-exon	Vfaba.Hedin2.R1.5g104560.2_vfh_v1-exon-chr5_vfh_v1:722633227..722633417	Vicia faba	exon
Vfaba.Hedin2.R1.5g104560.2_vfh_v1-exon	Vfaba.Hedin2.R1.5g104560.2_vfh_v1-exon-chr5_vfh_v1:722635920..722636163	Vicia faba	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Hedin2.R1.5g104560.2_vfh_v1-cds	Vfaba.Hedin2.R1.5g104560.2_vfh_v1-cds-chr5_vfh_v1:722633227..722633417	Vicia faba	CDS
Vfaba.Hedin2.R1.5g104560.2_vfh_v1-cds	Vfaba.Hedin2.R1.5g104560.2_vfh_v1-cds-chr5_vfh_v1:722635920..722636163	Vicia faba	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Hedin2.R1.5g104560.2_vfh_v1	Vfaba.Hedin2.R1.5g104560.2_vfh_v1	Vicia faba	polypeptide
Vfaba.Hedin2.R1.5g104560.2_vfh_v1	Vfaba.Hedin2.R1.5g104560.2_vfh_v1-protein	Vicia faba	polypeptide

Homology

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/TrEMBL
Match: tr|A0A392N1K0|A0A392N1K0_9FABA (Disease resistance protein OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.803e-28
Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = 0

Query:   64 GWIEGVVETLGTLEFSSLPHLKTLLPECLTTMTHLKKLRILYCFQLLSLPSDFHQLTSLEDLFIHGCPKLFQKYQPESGEY 144
            GWIEGVV+TL TL+   LP+LKTL PECLT MT LK+L+I+ C QLLSLPS  H+LTSLEDL I+GCP+L +K QP+SGEY
Sbjct:   33 GWIEGVVDTLETLQIYELPNLKTL-PECLTRMTRLKRLQIVECPQLLSLPSRMHRLTSLEDLVIYGCPELCRKCQPQSGEY 112

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/TrEMBL
Match: tr|A0A392M3W5|A0A392M3W5_9FABA (Putative disease resistance protein RGA4-like OS=Trifolium medium OX=97028 GN=A2U01_0002846 PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.605e-27
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 0

Query:   64 GWIEGVVETLGTLEFSSLPHLKTLLPECLTTMTHLKKLRILYCFQLLSLPSDFHQLTSLEDLFIHGCPKLFQKYQPESGEY 144
            GWIE VV+TL TL+   LP+LKTL PECLT MT LK+L+I  C QLLSLPSD H  T+LE+L I+ CPKLFQKYQP+ GEY
Sbjct:   33 GWIEDVVDTLETLQIFELPNLKTL-PECLTRMTRLKRLQIFDCPQLLSLPSDLHHHTALENLVIYDCPKLFQKYQPQLGEY 112

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3N924|A0A2K3N924_TRIPR (Disease resistance protein rga2-like OS=Trifolium pratense OX=57577 GN=L195_g022776 PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.121e-25
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 0

Query:   64 GWIEGVVETLGTLEFSSLPHLKTLLPECLTTMTHLKKLRILYCFQLLSLPSDFHQLTSLEDLFIHGCPKLFQKYQPESGEY 144
            GWIEGVV+TL TL+   LP+LKTL PECLT MT LK+L++  C QLLSLPSD H+LT+LE+L I+ C KLFQKYQP+ GEY
Sbjct:  438 GWIEGVVDTLETLQIYELPNLKTL-PECLTRMTRLKRLQMFDCPQLLSLPSDLHRLTALENLVIYDCSKLFQKYQPQLGEY 517

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/TrEMBL
Match: tr|A0A392PIN6|A0A392PIN6_9FABA (NBS-LRR disease resistance protein OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.750e-23
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 0

Query:   64 GWIEGVVETLGTLEFSSLPHLKTLLPECLTTMTHLKKLRILYCFQLLSLPSDFHQLTSLEDLFIHGCPKLFQKYQPESGEY 144
            GWI G V+TL TL    LP+LKTL PECLTTMT LK++ I  C QLLSLPSD ++LT+LE L I+GCP+L++KY+P  GEY
Sbjct:   51 GWIGGAVDTLETLLIYDLPNLKTL-PECLTTMTRLKRIHISDCPQLLSLPSDLYRLTALEYLCIYGCPELYRKYEPLYGEY 130

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MZ26|A0A2Z6MZ26_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_332210 PE=4 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.696e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 0

Query:   64 GWIEGVVETLGTLEFSSLPHLKTLLPECLTTMTHLKKLRILYCFQLLSLPSDFHQLTSLEDLFIHGCPKLFQKYQPESGEY 144
            GWIEGVVETL  L  S LP+   +LPECLTTMTH+KKL I  C QLLSLPS  H LTSLE+L I GCP+L +K +P+SGEY
Sbjct:  594 GWIEGVVETLEILVISELPNFH-MLPECLTTMTHVKKLFIFGCPQLLSLPSGMHHLTSLEELRIRGCPELCRKCKPQSGEY 673

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/TrEMBL
Match: tr|A0A392PVU2|A0A392PVU2_9FABA (Disease resistance protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.116e-23
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 0

Query:   65 WIEGVVETLGTLEFSSLPHLKTLLPECLTTMTHLKKLRILYCFQLLSLPSDFHQLTSLEDLFIHGCPKLFQKYQPESGEY 144
            WIEG VETL T+    LP+L TL PECLTTMTHLK+L I+ C QLLSLPSD H LT+LE L I  CP L +K +P+ GEY
Sbjct:    7 WIEGAVETLETMLIYELPNLHTL-PECLTTMTHLKRLDIIRCAQLLSLPSDIHCLTALEHLVIDECPVLCRKCKPKYGEY 85

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/TrEMBL
Match: tr|A0A392QYR5|A0A392QYR5_9FABA (Disease resistance protein (CC-NBS-LRR class) family protein OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.206e-23
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 0

Query:   65 WIEGVVETLGTLEFSSLPHLKTLLPECLTTMTHLKKLRILYCFQLLSLPSDFHQLTSLEDLFIHGCPKLFQKYQPESGEY 144
            WIEG  ETL  L  S LP+ + +LPECLTTMTHLKKL I  C QLLSLPS  H LT+LE L I GCP+L +K +P+SGEY
Sbjct:   34 WIEGAAETLEALAISELPNFR-MLPECLTTMTHLKKLGISGCPQLLSLPSGIHHLTALEFLRIKGCPELCRKCKPKSGEY 112

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3L115|A0A2K3L115_TRIPR (Disease resistance protein rga2-like OS=Trifolium pratense OX=57577 GN=L195_g028108 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.051e-22
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 0

Query:   64 GWIEGVVETLGTLEFSSLPHLKTLLPECLTTMTHLKKLRILYCFQLLSLPSDFHQLTSLEDLFIHGCPKLFQKYQPESGEY 144
            GWIEG  ETL  L    LP+L+T  PECLTTMTHLK+L I  C +L SLPS  H LT+LE+L+I GCP+L +K QP+SGEY
Sbjct:   78 GWIEGAAETLEILRIYELPNLQTF-PECLTTMTHLKRLIIRGCPKLSSLPSGIHNLTALEELYIDGCPELCRKCQPQSGEY 157

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MBQ7|A0A2Z6MBQ7_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_332530 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.570e-22
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 0

Query:   71 ETLGTLEFSSLPHLKTLLPECLTTMTHLKKLRILYCFQLLSLPSDFHQLTSLEDLFIHGCPKLFQKYQPESGEY 144
            ETL TL    L +LK +LPECLTTMTHLKKLRI  C QLL+LP+D H+LT+LEDL IH CP+L QKYQPE GEY
Sbjct:  632 ETLETLVIEKLSNLK-MLPECLTTMTHLKKLRIRLCPQLLTLPNDIHRLTALEDLHIHHCPELCQKYQPEIGEY 704

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/TrEMBL
Match: tr|A0A392PVV7|A0A392PVV7_9FABA (Disease resistance protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.105e-22
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 0

Query:   65 WIEGVVETLGTLEFSSLPHLKTLLPECLTTMTHLKKLRILYCFQLLSLPSDFHQLTSLEDLFIHGCPKLFQKYQPESGEY 144
            WIEG  ETL T+   +LP+L TL PECLT+MT+L+KL I  C QLLSLPSD H LT+LE L I+ CP+L +K +P+SGEY
Sbjct:   11 WIEGTTETLQTMIIYNLPNLDTL-PECLTSMTYLRKLHIFGCPQLLSLPSDIHHLTTLEYLVINECPELCRKCKPQSGEY 89

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SUE3|CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana OX=3702 GN=CRF4 PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 1.357e-10
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0

Query:    7 KQRKRLWLGTFNSAEEAAAEYDRVAVSLRGPHAVTNFPILP 47
            +QR+R+WLGTF +AEEAA  YD  A+ LRGP A+TNF + P
Sbjct:  137 EQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQP 177

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SKW5|ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana OX=3702 GN=ERF055 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.454e-10
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 0

Query:    7 KQRKRLWLGTFNSAEEAAAEYDRVAVSLRGPHAVTNFPILPAKVETQVPPPLNGGNYGWIEGVVE 71
            + R RLWLGTF++AEEAA  YDR A  LRG  A  NFP L  +  +    P + G YG I+  V+
Sbjct:  162 RNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPALRYQTGSS---PSDTGEYGPIQAAVD 223

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SUQ2|CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana OX=3702 GN=CRF2 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.689e-10
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 0

Query:    8 QRKRLWLGTFNSAEEAAAEYDRVAVSLRGPHAVTNFPILP 47
            +R RLWLGT+N+AEEAA  YD  A+ LRGP A+TNF + P
Sbjct:  142 KRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTP 181

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FK12|CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana OX=3702 GN=CRF3 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.889e-10
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 0

Query:    7 KQRKRLWLGTFNSAEEAAAEYDRVAVSLRGPHAVTNFPI 45
            +QR+R+WLGTF +AEEAA  YD  A+ LRGP A+TNF I
Sbjct:  144 EQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSI 182

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. Araport11
Match: AT4G27950.1 (| cytokinin response factor 4 | Chr4:13909732-13910739 REVERSE LENGTH=335 | 201606)

HSP 1 Score: 61.2326 bits (147), Expect = 1.388e-11
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0

Query:    7 KQRKRLWLGTFNSAEEAAAEYDRVAVSLRGPHAVTNFPILP 47
            +QR+R+WLGTF +AEEAA  YD  A+ LRGP A+TNF + P
Sbjct:  137 EQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQP 177

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. Araport11
Match: AT1G36060.1 (| Integrase-type DNA-binding superfamily protein | Chr1:13454718-13455662 REVERSE LENGTH=314 | 201606)

HSP 1 Score: 60.8474 bits (146), Expect = 1.487e-11
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 0

Query:    7 KQRKRLWLGTFNSAEEAAAEYDRVAVSLRGPHAVTNFPILPAKVETQVPPPLNGGNYGWIEGVVE 71
            + R RLWLGTF++AEEAA  YDR A  LRG  A  NFP L  +  +    P + G YG I+  V+
Sbjct:  162 RNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPALRYQTGSS---PSDTGEYGPIQAAVD 223

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. Araport11
Match: AT4G23750.2 (| cytokinin response factor 2 | Chr4:12376751-12377782 FORWARD LENGTH=343 | 201606)

HSP 1 Score: 60.077 bits (144), Expect = 2.752e-11
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 0

Query:    8 QRKRLWLGTFNSAEEAAAEYDRVAVSLRGPHAVTNFPILP 47
            +R RLWLGT+N+AEEAA  YD  A+ LRGP A+TNF + P
Sbjct:  142 KRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTP 181

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. Araport11
Match: AT4G23750.1 (| cytokinin response factor 2 | Chr4:12376751-12377782 FORWARD LENGTH=343 | 201606)

HSP 1 Score: 60.077 bits (144), Expect = 2.752e-11
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 0

Query:    8 QRKRLWLGTFNSAEEAAAEYDRVAVSLRGPHAVTNFPILP 47
            +R RLWLGT+N+AEEAA  YD  A+ LRGP A+TNF + P
Sbjct:  142 KRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTP 181

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. Araport11
Match: AT5G53290.1 (| cytokinin response factor 3 | Chr5:21617961-21619025 REVERSE LENGTH=354 | 201606)

HSP 1 Score: 60.077 bits (144), Expect = 2.956e-11
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 0

Query:    7 KQRKRLWLGTFNSAEEAAAEYDRVAVSLRGPHAVTNFPI 45
            +QR+R+WLGTF +AEEAA  YD  A+ LRGP A+TNF I
Sbjct:  144 EQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSI 182

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. Araport11
Match: AT1G50640.1 (| ethylene responsive element binding factor 3 | Chr1:18757602-18758279 REVERSE LENGTH=225 | 201606)

HSP 1 Score: 56.6102 bits (135), Expect = 3.015e-10
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0

Query:    8 QRKRLWLGTFNSAEEAAAEYDRVAVSLRGPHAVTNFPI 45
            ++ R+WLGTF+SAEEAA  YD  A +LRGP A TNFPI
Sbjct:   48 KKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPI 85

[Close]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. Araport11
Match: AT1G71130.1 (| Integrase-type DNA-binding superfamily protein | Chr1:26822877-26823362 FORWARD LENGTH=161 | 201606)

HSP 1 Score: 55.4546 bits (132), Expect = 3.698e-10
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 0

Query:    8 QRKRLWLGTFNSAEEAAAEYDRVAVSLRGPHAVTNFPILPA 48
            +R RLWLGTFN+AEEAA  YD  ++ L GPHA TNF  LPA
Sbjct:  104 RRDRLWLGTFNTAEEAALAYDNASIKLIGPHAPTNFG-LPA 143

The following BLAST results are available for this feature:

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/TrEMBL
BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/Swiss-Prot
BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. Araport11

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A392N1K0\|A0A392N1K0_9FABA	2.803e-28	69.14	Disease resistance protein OS=Trifolium medium OX=...	[more]
tr\|A0A392M3W5\|A0A392M3W5_9FABA	1.605e-27	67.90	Putative disease resistance protein RGA4-like OS=T...	[more]
tr\|A0A2K3N924\|A0A2K3N924_TRIPR	1.121e-25	67.90	Disease resistance protein rga2-like OS=Trifolium ...	[more]
tr\|A0A392PIN6\|A0A392PIN6_9FABA	1.750e-23	62.96	NBS-LRR disease resistance protein OS=Trifolium me...	[more]
tr\|A0A2Z6MZ26\|A0A2Z6MZ26_TRISU	3.696e-23	66.67	Uncharacterized protein OS=Trifolium subterraneum ...	[more]
tr\|A0A392PVU2\|A0A392PVU2_9FABA	5.116e-23	63.75	Disease resistance protein (Fragment) OS=Trifolium...	[more]
tr\|A0A392QYR5\|A0A392QYR5_9FABA	7.206e-23	63.75	Disease resistance protein (CC-NBS-LRR class) fami...	[more]
tr\|A0A2K3L115\|A0A2K3L115_TRIPR	2.051e-22	61.73	Disease resistance protein rga2-like OS=Trifolium ...	[more]
tr\|A0A2Z6MBQ7\|A0A2Z6MBQ7_TRISU	3.570e-22	70.27	Uncharacterized protein OS=Trifolium subterraneum ...	[more]
tr\|A0A392PVV7\|A0A392PVV7_9FABA	6.105e-22	61.25	Disease resistance protein (Fragment) OS=Trifolium...	[more]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 4


Match Name	E-value	Identity	Description
sp\|Q9SUE3\|CRF4_ARATH	1.357e-10	60.98	Ethylene-responsive transcription factor CRF4 OS=A...	[more]
sp\|Q9SKW5\|ERF55_ARATH	1.454e-10	47.69	Ethylene-responsive transcription factor ERF055 OS...	[more]
sp\|Q9SUQ2\|CRF2_ARATH	2.689e-10	62.50	Ethylene-responsive transcription factor CRF2 OS=A...	[more]
sp\|Q9FK12\|CRF3_ARATH	2.889e-10	64.10	Ethylene-responsive transcription factor CRF3 OS=A...	[more]

BLAST of Vfaba.Hedin2.R1.5g104560.2 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 7


Match Name	E-value	Identity	Description
AT4G27950.1	1.388e-11	60.98	\| cytokinin response factor 4 \| Chr4:13909732-1391...	[more]
AT1G36060.1	1.487e-11	47.69	\| Integrase-type DNA-binding superfamily protein \|...	[more]
AT4G23750.2	2.752e-11	62.50	\| cytokinin response factor 2 \| Chr4:12376751-1237...	[more]
AT4G23750.1	2.752e-11	62.50	\| cytokinin response factor 2 \| Chr4:12376751-1237...	[more]
AT5G53290.1	2.956e-11	64.10	\| cytokinin response factor 3 \| Chr5:21617961-2161...	[more]
AT1G50640.1	3.015e-10	65.79	\| ethylene responsive element binding factor 3 \| C...	[more]
AT1G71130.1	3.698e-10	65.85	\| Integrase-type DNA-binding superfamily protein \|...	[more]

InterPro

Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 54..141 e-value: 1.3E-11 score: 45.6
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 3..46 e-value: 1.0E-13 score: 53.2
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 7..59
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 72..132
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 1..44 score: 12.57589
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 7..46 e-value: 2.35963E-15 score: 64.2151
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 7..45

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:722633227..722636163+

mRNA sequence

>Vfaba.Hedin2.R1.5g104560.2_vfh_v1 ID=Vfaba.Hedin2.R1.5g104560.2_vfh_v1; Name=Vfaba.Hedin2.R1.5g104560.2; organism=Vicia faba; type=mRNA; length=435bp
ATGGACATGTTCCAACACAAACAACGGAAACGTCTCTGGCTGGGAACATT
TAACTCCGCTGAAGAAGCTGCCGCCGAGTACGACAGAGTTGCTGTCTCGC
TCAGAGGTCCTCACGCTGTCACCAACTTTCCTATTTTACCGGCGAAGGTG
GAAACTCAAGTACCACCGCCGCTGAATGGCGGAAATTACGGTTGGATTGA
AGGTGTTGTAGAGACTTTAGGGACACTGGAATTTTCTTCACTTCCCCATC
TTAAAACCCTTCTTCCTGAGTGTCTAACAACAATGACTCATCTTAAAAAA
CTTCGGATTTTGTACTGCTTTCAATTGTTGAGTCTTCCAAGTGACTTCCA
TCAACTTACTTCCCTTGAAGATTTATTCATACATGGTTGTCCTAAGTTGT
TCCAAAAATATCAGCCTGAGTCTGGTGAGTATTGA

protein sequence of Vfaba.Hedin2.R1.5g104560.2_vfh_v1

>Vfaba.Hedin2.R1.5g104560.2_vfh_v1 ID=Vfaba.Hedin2.R1.5g104560.2_vfh_v1; Name=Vfaba.Hedin2.R1.5g104560.2_vfh_v1; organism=Vicia faba; type=polypeptide; length=144bp
MDMFQHKQRKRLWLGTFNSAEEAAAEYDRVAVSLRGPHAVTNFPILPAKV
ETQVPPPLNGGNYGWIEGVVETLGTLEFSSLPHLKTLLPECLTTMTHLKK
LRILYCFQLLSLPSDFHQLTSLEDLFIHGCPKLFQKYQPESGEY

mRNA from alignment at chr5:722633227..722636163+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>Vfaba.Hedin2.R1.5g104560.2_vfh_v1 ID=Vfaba.Hedin2.R1.5g104560.2_vfh_v1; Name=Vfaba.Hedin2.R1.5g104560.2; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:722633227..722636163+ (Vicia faba

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR036955	AP2/ERF_dom_sf
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of DNA-templated transcription

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	DNA-binding transcription factor activity
GO:0003677	DNA binding

Search form

Vfaba.Hedin2.R1.5g104560.2