Vfaba.Hedin2.R1.5g187120.1

Transcript Overview
NameVfaba.Hedin2.R1.5g187120.1
Unique NameVfaba.Hedin2.R1.5g187120.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length372
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr5chromosomechr5:1295039039..1295039888 -Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR464Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR496Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
psvfhL238Pisum sativum Cameor genome v1aPisum sativum
psvfhL673Pisum sativum Cameor genome v1aPisum sativum
vfhvfhL183Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL264Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL361Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR592Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR594Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvrvR608Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvuaR538Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvuaR550Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR616Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR640Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvvaR563Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR596Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvstR663Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR692Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvunR548Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR551Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Psat03G0028200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
XM_058882705.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
evm.model.Chr06.1265Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigst.05G107400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Psat3g006680.2Pisum sativum Cameor genome v1aPisum sativum
Vigun06g116000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg30821.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun06g116000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.5g146880.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g187120Vfaba.Hedin2.R1.5g187120_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g187120.1_vfh_v1-exonVfaba.Hedin2.R1.5g187120.1_vfh_v1-exon-chr5_vfh_v1:1295039039..1295039122Vicia fabaexon
Vfaba.Hedin2.R1.5g187120.1_vfh_v1-exonVfaba.Hedin2.R1.5g187120.1_vfh_v1-exon-chr5_vfh_v1:1295039342..1295039401Vicia fabaexon
Vfaba.Hedin2.R1.5g187120.1_vfh_v1-exonVfaba.Hedin2.R1.5g187120.1_vfh_v1-exon-chr5_vfh_v1:1295039479..1295039579Vicia fabaexon
Vfaba.Hedin2.R1.5g187120.1_vfh_v1-exonVfaba.Hedin2.R1.5g187120.1_vfh_v1-exon-chr5_vfh_v1:1295039762..1295039888Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g187120.1_vfh_v1-cdsVfaba.Hedin2.R1.5g187120.1_vfh_v1-cds-chr5_vfh_v1:1295039039..1295039122Vicia fabaCDS
Vfaba.Hedin2.R1.5g187120.1_vfh_v1-cdsVfaba.Hedin2.R1.5g187120.1_vfh_v1-cds-chr5_vfh_v1:1295039342..1295039401Vicia fabaCDS
Vfaba.Hedin2.R1.5g187120.1_vfh_v1-cdsVfaba.Hedin2.R1.5g187120.1_vfh_v1-cds-chr5_vfh_v1:1295039479..1295039579Vicia fabaCDS
Vfaba.Hedin2.R1.5g187120.1_vfh_v1-cdsVfaba.Hedin2.R1.5g187120.1_vfh_v1-cds-chr5_vfh_v1:1295039762..1295039888Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g187120.1_vfh_v1Vfaba.Hedin2.R1.5g187120.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.5g187120.1_vfh_v1Vfaba.Hedin2.R1.5g187120.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MR27|A0A2K3MR27_TRIPR (Zinc finger CCCH domain-containing protein 19-like (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g016432 PE=4 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.058e-32
Identity = 62/83 (74.70%), Postives = 69/83 (83.13%), Query Frame = 0
Query:   41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTIWIASRLANLEIQIERANLRGRNKQYPS 123
            V  V HDEM NGI L VSFMPKAI ISELSDEDFTE+ECED RQKV+ GLLPKLT+WI+  L  L+IQIERANLR +NK+YPS
Sbjct:  342 VIDVEHDEMSNGIRLRVSFMPKAIPISELSDEDFTEEECEDLRQKVSIGLLPKLTVWISKNLVYLQIQIERANLREQNKEYPS 424          

HSP 2 Score: 97.0561 bits (240), Expect = 8.727e-21
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0
Query:   41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTI 96
            VT V  DEM NGILLEVSFMPKAI ISELSDEDFT+QECED RQKVNTGL+PKLT+
Sbjct:  769 VTGVDPDEMSNGILLEVSFMPKAIPISELSDEDFTQQECEDLRQKVNTGLIPKLTV 824          
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XUJ3|A0A1S2XUJ3_CICAR (zinc finger CCCH domain-containing protein 44-like OS=Cicer arietinum OX=3827 GN=LOC101514441 PE=4 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.334e-25
Identity = 56/97 (57.73%), Postives = 65/97 (67.01%), Query Frame = 0
Query:   41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTI-----------------WIASRLANLEIQIERANLRGRNKQ 120
            V  V+HDEM NGILL+VSF+P AI ISELSD+DFTEQECED +QKV   LLPKL +                 WI +RL  L +QIERANLRGR K+
Sbjct:  408 VLGVIHDEMSNGILLQVSFVPNAIPISELSDDDFTEQECEDLQQKVKAKLLPKLNVGDLQEKATSLHKDITKHWIVTRLVYLRVQIERANLRGRTKE 504          
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KLX9|A0A4D6KLX9_VIGUN (Plus3 domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g1230 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 6.125e-24
Identity = 54/99 (54.55%), Postives = 64/99 (64.65%), Query Frame = 0
Query:   41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTIW-----------------IASRLANLEIQIERANLRGRNKQYP 122
            V+ V  DE     LL+VS MPKAI+ISELSDEDFTEQECED +QKV   LLPKLT+                    +RL +L+ QI+RANLRGRNK+YP
Sbjct:  111 VSGVEFDETSKRTLLQVSIMPKAIAISELSDEDFTEQECEDLQQKVKASLLPKLTVAEVQEKAESLHEDIKKHSFTTRLVHLQNQIDRANLRGRNKEYP 209          
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445LGV3|A0A445LGV3_GLYSO (Plus3 domain-containing protein (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_008182 PE=4 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.128e-23
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 0
Query:   41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTI-----------------WIASRLANLEIQIERANLRGRNKQYP 122
            V  V  DE+ NG LL+VSFM KA+ ISELSDEDFTEQECED +QKV  GLLPKL++                  I +RL  L+ QI+RANLRGRN++YP
Sbjct:  594 VLGVFFDEISNGTLLQVSFMDKAVPISELSDEDFTEQECEDLQQKVKAGLLPKLSVVEVQEKAEILHEDITKHRILTRLVYLQNQIDRANLRGRNREYP 692          
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396HCD7|A0A396HCD7_MEDTR (Putative chromatin remodeling SWIB-Plus-3 family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr7g0274571 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.176e-22
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0
Query:   41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTI 96
            V  V HDEM NGILL+VSFMPKAISISELSD+DFTEQECED RQKVNTGL PK+T+
Sbjct:  264 VIGVQHDEMSNGILLQVSFMPKAISISELSDDDFTEQECEDLRQKVNTGLFPKITV 319          
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|V7BRK7|V7BRK7_PHAVU (Plus3 domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G105100g PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.217e-22
Identity = 56/97 (57.73%), Postives = 65/97 (67.01%), Query Frame = 0
Query:   41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTIW-----------------IASRLANLEIQIERANLRGRNKQ 120
            V  V  DEMPN ILL+VS MPKAI ISELSDEDFTEQECED +QKV T LLPKLT+                  I +RL +L+ QI+RANLRGR ++
Sbjct:  520 VLGVEFDEMPNRILLQVSIMPKAIPISELSDEDFTEQECEDLQQKVKTSLLPKLTVAELQEKAESLHEDITKHSITTRLVHLQNQIDRANLRGRTRE 616          
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KIA2|A0A4D6KIA2_VIGUN (Histone-lysine N-methyltransferase NSD1/2 OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g1232 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.277e-22
Identity = 54/99 (54.55%), Postives = 64/99 (64.65%), Query Frame = 0
Query:   41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTIW-----------------IASRLANLEIQIERANLRGRNKQYP 122
            V+ V  DE     LL+VS MPKAI+ISELSDEDFTEQECED +QKV   LLPKLT+                    +RL +L+ QI+RANLRGRNK+YP
Sbjct:  831 VSGVEFDETSKRTLLQVSIMPKAIAISELSDEDFTEQECEDLQQKVKASLLPKLTVAEVQEKAESLHEDIKKHSFTTRLVHLQNQIDRANLRGRNKEYP 929          

HSP 2 Score: 77.411 bits (189), Expect = 5.588e-14
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 0
Query:   41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTIW-IASRLANLEIQIERANL 114
            V+ V  DE     LL+VS MPKAI+ISELSDEDFTEQECED +QKV   LLPKLT+  +  +  +L   I++ N+
Sbjct:  350 VSGVEFDETSKRTLLQVSIMPKAIAISELSDEDFTEQECEDLQQKVKASLLPKLTVAEVQEKAESLHEDIKKHNM 424          
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445LH39|A0A445LH39_GLYSO (Plus3 domain-containing protein (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_008182 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.038e-21
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 0
Query:   41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTI-----------------WIASRLANLEIQIERANLRGRNK 119
            V  V  DE+ NG LL+VSFM KA+ ISELSDEDFTEQECED +QKV  GLLPKL++                  I +RL  L+ QI+RANLRGRN+
Sbjct:  622 VLGVFFDEISNGTLLQVSFMDKAVPISELSDEDFTEQECEDLQQKVKAGLLPKLSVVEVQEKAEILHEDITKHRILTRLVYLQNQIDRANLRGRNR 717          
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|K7KGZ1|K7KGZ1_SOYBN (Plus3 domain-containing protein OS=Glycine max OX=3847 GN=100803428 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.280e-21
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 0
Query:   41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTI-----------------WIASRLANLEIQIERANLRGRNK 119
            V  V  DE+ NG LL+VSFM KA+ ISELSDEDFTEQECED +QKV  GLLPKL++                  I +RL  L+ QI+RANLRGRN+
Sbjct:  591 VLGVFFDEISNGTLLQVSFMDKAVPISELSDEDFTEQECEDLQQKVKAGLLPKLSVVEVQEKAEILHEDITKHRILTRLVYLQNQIDRANLRGRNR 686          
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0EPG3|A0A3Q0EPG3_VIGRR (uncharacterized protein LOC106754038 OS=Vigna radiata var. radiata OX=3916 GN=LOC106754038 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.476e-21
Identity = 54/97 (55.67%), Postives = 64/97 (65.98%), Query Frame = 0
Query:   41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTIW-----------------IASRLANLEIQIERANLRGRNKQ 120
            V  V  DE+ N  LL+VS MPKAI+ISELSDEDFTEQECED +QKV T LLPKLT+                    +RL +L+ QI+RANLRGRNK+
Sbjct:  521 VLGVEFDEISNRTLLQVSLMPKAIAISELSDEDFTEQECEDLQQKVKTSLLPKLTVAEVQEKAESLHEDITKHSFTTRLVHLQNQIDRANLRGRNKE 617          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2K3MR27|A0A2K3MR27_TRIPR4.058e-3274.70Zinc finger CCCH domain-containing protein 19-like... [more]
tr|A0A1S2XUJ3|A0A1S2XUJ3_CICAR1.334e-2557.73zinc finger CCCH domain-containing protein 44-like... [more]
tr|A0A4D6KLX9|A0A4D6KLX9_VIGUN6.125e-2454.55Plus3 domain-containing protein OS=Vigna unguicula... [more]
tr|A0A445LGV3|A0A445LGV3_GLYSO1.128e-2355.56Plus3 domain-containing protein (Fragment) OS=Glyc... [more]
tr|A0A396HCD7|A0A396HCD7_MEDTR1.176e-2282.14Putative chromatin remodeling SWIB-Plus-3 family O... [more]
tr|V7BRK7|V7BRK7_PHAVU1.217e-2257.73Plus3 domain-containing protein OS=Phaseolus vulga... [more]
tr|A0A4D6KIA2|A0A4D6KIA2_VIGUN4.277e-2254.55Histone-lysine N-methyltransferase NSD1/2 OS=Vigna... [more]
tr|A0A445LH39|A0A445LH39_GLYSO2.038e-2155.21Plus3 domain-containing protein (Fragment) OS=Glyc... [more]
tr|K7KGZ1|K7KGZ1_SOYBN2.280e-2155.21Plus3 domain-containing protein OS=Glycine max OX=... [more]
tr|A0A3Q0EPG3|A0A3Q0EPG3_VIGRR2.476e-2155.67uncharacterized protein LOC106754038 OS=Vigna radi... [more]
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BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036128Plus3-like superfamilyGENE3D3.90.70.200coord: 11..106
e-value: 3.5E-6
score: 28.9
IPR045894At5g08430-likePANTHERPTHR46851OS01G0884500 PROTEINcoord: 15..122

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.5g187120.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g187120.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g187120.1; organism=Vicia faba; type=mRNA; length=372bp
ATGCACACCCCTAACTCTTACTGTATATGCCTAAAAAAACCAATCAAATC
CAACCTCAACAACAAGATGAAGAAGACTTATGTTTTAAATGCAAAGATTG
TGGACAACTTGATATCTGTTGTCACAAGTGTTGTACACGATGAAATGCCT
AATGGGATACTATTGGAAGTTTCCTTCATGCCTAAAGCGATTTCCATTTC
CGAGCTTTCTGATGAAGACTTCACCGAGCAAGAATGTGAGGATTCGCGAC
AAAAAGTGAACACTGGCTTGCTCCCCAAGTTAACCATTTGGATTGCATCA
CGCCTTGCGAATTTGGAGATTCAAATCGAGCGAGCAAATCTGAGAGGACG
AAATAAACAATATCCTTCTTAA
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protein sequence of Vfaba.Hedin2.R1.5g187120.1_vfh_v1

>Vfaba.Hedin2.R1.5g187120.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g187120.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g187120.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=123bp
MHTPNSYCICLKKPIKSNLNNKMKKTYVLNAKIVDNLISVVTSVVHDEMP
NGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTIWIAS
RLANLEIQIERANLRGRNKQYPS
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mRNA from alignment at chr5:1295039039..1295039888-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.5g187120.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g187120.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g187120.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1295039039..1295039888- (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR036128Plus3-like_sf
IPR045894At5g08430-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding