Vfaba.Hedin2.R1.5g187120.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MR27|A0A2K3MR27_TRIPR (Zinc finger CCCH domain-containing protein 19-like (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g016432 PE=4 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 4.058e-32 Identity = 62/83 (74.70%), Postives = 69/83 (83.13%), Query Frame = 0 Query: 41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTIWIASRLANLEIQIERANLRGRNKQYPS 123 V V HDEM NGI L VSFMPKAI ISELSDEDFTE+ECED RQKV+ GLLPKLT+WI+ L L+IQIERANLR +NK+YPS Sbjct: 342 VIDVEHDEMSNGIRLRVSFMPKAIPISELSDEDFTEEECEDLRQKVSIGLLPKLTVWISKNLVYLQIQIERANLREQNKEYPS 424 HSP 2 Score: 97.0561 bits (240), Expect = 8.727e-21 Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0 Query: 41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTI 96 VT V DEM NGILLEVSFMPKAI ISELSDEDFT+QECED RQKVNTGL+PKLT+ Sbjct: 769 VTGVDPDEMSNGILLEVSFMPKAIPISELSDEDFTQQECEDLRQKVNTGLIPKLTV 824
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XUJ3|A0A1S2XUJ3_CICAR (zinc finger CCCH domain-containing protein 44-like OS=Cicer arietinum OX=3827 GN=LOC101514441 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.334e-25 Identity = 56/97 (57.73%), Postives = 65/97 (67.01%), Query Frame = 0 Query: 41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTI-----------------WIASRLANLEIQIERANLRGRNKQ 120 V V+HDEM NGILL+VSF+P AI ISELSD+DFTEQECED +QKV LLPKL + WI +RL L +QIERANLRGR K+ Sbjct: 408 VLGVIHDEMSNGILLQVSFVPNAIPISELSDDDFTEQECEDLQQKVKAKLLPKLNVGDLQEKATSLHKDITKHWIVTRLVYLRVQIERANLRGRTKE 504
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KLX9|A0A4D6KLX9_VIGUN (Plus3 domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g1230 PE=4 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 6.125e-24 Identity = 54/99 (54.55%), Postives = 64/99 (64.65%), Query Frame = 0 Query: 41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTIW-----------------IASRLANLEIQIERANLRGRNKQYP 122 V+ V DE LL+VS MPKAI+ISELSDEDFTEQECED +QKV LLPKLT+ +RL +L+ QI+RANLRGRNK+YP Sbjct: 111 VSGVEFDETSKRTLLQVSIMPKAIAISELSDEDFTEQECEDLQQKVKASLLPKLTVAEVQEKAESLHEDIKKHSFTTRLVHLQNQIDRANLRGRNKEYP 209
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445LGV3|A0A445LGV3_GLYSO (Plus3 domain-containing protein (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_008182 PE=4 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.128e-23 Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 0 Query: 41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTI-----------------WIASRLANLEIQIERANLRGRNKQYP 122 V V DE+ NG LL+VSFM KA+ ISELSDEDFTEQECED +QKV GLLPKL++ I +RL L+ QI+RANLRGRN++YP Sbjct: 594 VLGVFFDEISNGTLLQVSFMDKAVPISELSDEDFTEQECEDLQQKVKAGLLPKLSVVEVQEKAEILHEDITKHRILTRLVYLQNQIDRANLRGRNREYP 692
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396HCD7|A0A396HCD7_MEDTR (Putative chromatin remodeling SWIB-Plus-3 family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr7g0274571 PE=4 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.176e-22 Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0 Query: 41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTI 96 V V HDEM NGILL+VSFMPKAISISELSD+DFTEQECED RQKVNTGL PK+T+ Sbjct: 264 VIGVQHDEMSNGILLQVSFMPKAISISELSDDDFTEQECEDLRQKVNTGLFPKITV 319
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|V7BRK7|V7BRK7_PHAVU (Plus3 domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G105100g PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.217e-22 Identity = 56/97 (57.73%), Postives = 65/97 (67.01%), Query Frame = 0 Query: 41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTIW-----------------IASRLANLEIQIERANLRGRNKQ 120 V V DEMPN ILL+VS MPKAI ISELSDEDFTEQECED +QKV T LLPKLT+ I +RL +L+ QI+RANLRGR ++ Sbjct: 520 VLGVEFDEMPNRILLQVSIMPKAIPISELSDEDFTEQECEDLQQKVKTSLLPKLTVAELQEKAESLHEDITKHSITTRLVHLQNQIDRANLRGRTRE 616
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KIA2|A0A4D6KIA2_VIGUN (Histone-lysine N-methyltransferase NSD1/2 OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g1232 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.277e-22 Identity = 54/99 (54.55%), Postives = 64/99 (64.65%), Query Frame = 0 Query: 41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTIW-----------------IASRLANLEIQIERANLRGRNKQYP 122 V+ V DE LL+VS MPKAI+ISELSDEDFTEQECED +QKV LLPKLT+ +RL +L+ QI+RANLRGRNK+YP Sbjct: 831 VSGVEFDETSKRTLLQVSIMPKAIAISELSDEDFTEQECEDLQQKVKASLLPKLTVAEVQEKAESLHEDIKKHSFTTRLVHLQNQIDRANLRGRNKEYP 929 HSP 2 Score: 77.411 bits (189), Expect = 5.588e-14 Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 0 Query: 41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTIW-IASRLANLEIQIERANL 114 V+ V DE LL+VS MPKAI+ISELSDEDFTEQECED +QKV LLPKLT+ + + +L I++ N+ Sbjct: 350 VSGVEFDETSKRTLLQVSIMPKAIAISELSDEDFTEQECEDLQQKVKASLLPKLTVAEVQEKAESLHEDIKKHNM 424
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445LH39|A0A445LH39_GLYSO (Plus3 domain-containing protein (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_008182 PE=4 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.038e-21 Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 0 Query: 41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTI-----------------WIASRLANLEIQIERANLRGRNK 119 V V DE+ NG LL+VSFM KA+ ISELSDEDFTEQECED +QKV GLLPKL++ I +RL L+ QI+RANLRGRN+ Sbjct: 622 VLGVFFDEISNGTLLQVSFMDKAVPISELSDEDFTEQECEDLQQKVKAGLLPKLSVVEVQEKAEILHEDITKHRILTRLVYLQNQIDRANLRGRNR 717
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|K7KGZ1|K7KGZ1_SOYBN (Plus3 domain-containing protein OS=Glycine max OX=3847 GN=100803428 PE=4 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.280e-21 Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 0 Query: 41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTI-----------------WIASRLANLEIQIERANLRGRNK 119 V V DE+ NG LL+VSFM KA+ ISELSDEDFTEQECED +QKV GLLPKL++ I +RL L+ QI+RANLRGRN+ Sbjct: 591 VLGVFFDEISNGTLLQVSFMDKAVPISELSDEDFTEQECEDLQQKVKAGLLPKLSVVEVQEKAEILHEDITKHRILTRLVYLQNQIDRANLRGRNR 686
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0EPG3|A0A3Q0EPG3_VIGRR (uncharacterized protein LOC106754038 OS=Vigna radiata var. radiata OX=3916 GN=LOC106754038 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.476e-21 Identity = 54/97 (55.67%), Postives = 64/97 (65.98%), Query Frame = 0 Query: 41 VTSVVHDEMPNGILLEVSFMPKAISISELSDEDFTEQECEDSRQKVNTGLLPKLTIW-----------------IASRLANLEIQIERANLRGRNKQ 120 V V DE+ N LL+VS MPKAI+ISELSDEDFTEQECED +QKV T LLPKLT+ +RL +L+ QI+RANLRGRNK+ Sbjct: 521 VLGVEFDEISNRTLLQVSLMPKAIAISELSDEDFTEQECEDLQQKVKTSLLPKLTVAEVQEKAESLHEDITKHSFTTRLVHLQNQIDRANLRGRNKE 617 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.5g187120.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 0
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.5g187120.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g187120.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g187120.1; organism=Vicia faba; type=mRNA; length=372bpback to top protein sequence of Vfaba.Hedin2.R1.5g187120.1_vfh_v1 >Vfaba.Hedin2.R1.5g187120.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g187120.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g187120.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=123bpback to top mRNA from alignment at chr5:1295039039..1295039888- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.5g187120.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g187120.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g187120.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1295039039..1295039888- (Vicia fababack to top |