Vfaba.Hedin2.R1.5g195720.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2I0INL2|A0A2I0INL2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_034615 PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.037e-24 Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0 Query: 145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQ---LDGEN 221 +HLRKERFP+G+F KLKPRADGPF++LKR+GENAYK+EL +Y VS T VSDL PY E+ +D G SL Q DGEN Sbjct: 96 IHLRKERFPQGRFGKLKPRADGPFRILKRVGENAYKVELLGDYGVSATFNVSDLLPYAEEDEGSDLGTSLFQPGESDGEN 175
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2I0IXH7|A0A2I0IXH7_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_031158 PE=4 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.481e-23 Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 0 Query: 145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQ---LDGEN 221 +HL KERFP+G F KLKPRADGPF++LKR+GENAYK+ELP +Y VS T VSDL PY E+ ++ G SL Q DGEN Sbjct: 36 IHLCKERFPQGCFGKLKPRADGPFRILKRVGENAYKVELPRDYGVSATFNVSDLLPYAREDEGSNLGTSLFQPGENDGEN 115
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2I0KJ23|A0A2I0KJ23_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_011076 PE=4 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.844e-23 Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 0 Query: 145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQ---LDGEN 221 +HLRKE FP+G+F KLKPRADGPF++LKR+GENAYK+ELP +Y VS T VSDL PY GE+ +D G SL Q DGEN Sbjct: 364 IHLRKEWFPQGRFGKLKPRADGPFRILKRVGENAYKVELPGDYGVSATFNVSDLLPYAGEDEGSDLGTSLFQPGENDGEN 443
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2I0IVM1|A0A2I0IVM1_PUNGR (Integrase catalytic domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_031575 PE=4 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.417e-22 Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 0 Query: 145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQL---DGEN 221 +HLRKE+FP+G+F KLKPRA+GPF++LKR+GENAYK+EL +Y VS T VS+L PY GEE +D G SL QL DG+N Sbjct: 660 IHLRKEQFPQGRFGKLKPRAEGPFRILKRVGENAYKVELSGDYGVSPTFNVSNLLPYTGEEEGSDLGTSLFQLGENDGDN 739
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1Q3AVB0|A0A1Q3AVB0_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03146 PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.060e-22 Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 0 Query: 145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQ 216 +HLR+ERFP G+F KLKPRADGPFKVL+RI +NAYKIELP EY VS T V++L PYY +E+ DS +L Q Sbjct: 37 IHLRRERFPVGRFGKLKPRADGPFKVLQRINDNAYKIELPGEYNVSGTFNVANLSPYYDDEA--DSRVNLSQ 106
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1Q3C034|A0A1Q3C034_CEPFO (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_17117 PE=4 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 9.018e-22 Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 0 Query: 145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQLDGEN 221 +HLR+ERFP G+F KLKPRAD PFKVL+RI +NAYKIELP EY V T ++DL PYY +E+ DS A+L Q G++ Sbjct: 23 IHLRRERFPAGRFGKLKPRADCPFKVLQRINDNAYKIELPGEYNVYGTSNIADLSPYYDDEA--DSRANLFQGGGDD 97
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2I0JBA0|A0A2I0JBA0_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_026115 PE=4 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.737e-21 Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 0 Query: 145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQ---LDGEN 221 +HL KERFP+G+F KLKPR DGPF++LKR+GEN YK++LP +Y VS T VSDL PY GE+ +D G SL Q DGEN Sbjct: 528 IHLCKERFPQGRFGKLKPRVDGPFRILKRVGENTYKVDLPRDYGVSATFNVSDLLPYAGEDEGSDLGTSLFQPGENDGEN 607
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P5TJS6|A0A6P5TJS6_PRUAV (uncharacterized protein LOC110767928 OS=Prunus avium OX=42229 GN=LOC110767928 PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.837e-21 Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 0 Query: 145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGAS 213 +HLRKERFPRG+ KLKPRADGPFKVL+R+G+NAYKIELP Y VS T V+DL PY+G E +SG S Sbjct: 1018 IHLRKERFPRGKHGKLKPRADGPFKVLRRVGDNAYKIELPGNYGVSATFNVADLSPYHGSEDEENSGTS 1086
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1Q3C354|A0A1Q3C354_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18109 PE=4 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.474e-21 Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0 Query: 145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQLDGEN 221 +HLR+ERFP G+F KLKPRADGPFKVL+RI +NAYKIELP +Y VS T V+ L PYY +E DS A+L Q G++ Sbjct: 37 IHLRQERFPAGRFGKLKPRADGPFKVLQRINDNAYKIELPGKYNVSGTFNVAYLSPYYDDEV--DSRANLSQGGGDD 111
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1Q3CZM0|A0A1Q3CZM0_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28964 PE=4 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.548e-21 Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 0 Query: 145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQLDGEN 221 +HLR+ERFP G+F KL+PRA+GPFK L+RI +NAYKIELP EY VS T V+DL PYY +E+ DS ++ Q G++ Sbjct: 37 IHLRRERFPAGKFEKLQPRANGPFKFLQRINDNAYKIELPGEYNVSGTFNVADLSPYYNDEA--DSRVNISQGGGDD 111 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 0
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.5g195720.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g195720.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g195720.1; organism=Vicia faba; type=mRNA; length=666bpback to top protein sequence of Vfaba.Hedin2.R1.5g195720.1_vfh_v1 >Vfaba.Hedin2.R1.5g195720.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g195720.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g195720.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=221bpback to top mRNA from alignment at chr5:1343755131..1343756903+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.5g195720.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g195720.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g195720.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1343755131..1343756903+ (Vicia fababack to top |