Vfaba.Hedin2.R1.5g195720.1

Transcript Overview
NameVfaba.Hedin2.R1.5g195720.1
Unique NameVfaba.Hedin2.R1.5g195720.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length666
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr5chromosomechr5:1343755131..1343756903 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR464Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR475Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR487Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
ccvfhL0788Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL280Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvfhL567Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvfhL238Pisum sativum Cameor genome v1aPisum sativum
psvfhL252Pisum sativum Cameor genome v1aPisum sativum
psvfhL378Pisum sativum Cameor genome v1aPisum sativum
vfhvfhL147Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvfhL201Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL317Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL361Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhL275Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivfhL928Cicer arietinum ICC 4958 genome v2Cicer arietinum
vfhvrvR560Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvssR582Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR607Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR627Vicia sativa cv. Studenica genome v1.0Vicia sativa
vasvfhL303Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL539Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL813Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvfhL114Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL552Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL856Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g195720Vfaba.Hedin2.R1.5g195720_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g195720.1_vfh_v1-exonVfaba.Hedin2.R1.5g195720.1_vfh_v1-exon-chr5_vfh_v1:1343755131..1343755272Vicia fabaexon
Vfaba.Hedin2.R1.5g195720.1_vfh_v1-exonVfaba.Hedin2.R1.5g195720.1_vfh_v1-exon-chr5_vfh_v1:1343755460..1343755524Vicia fabaexon
Vfaba.Hedin2.R1.5g195720.1_vfh_v1-exonVfaba.Hedin2.R1.5g195720.1_vfh_v1-exon-chr5_vfh_v1:1343755696..1343755812Vicia fabaexon
Vfaba.Hedin2.R1.5g195720.1_vfh_v1-exonVfaba.Hedin2.R1.5g195720.1_vfh_v1-exon-chr5_vfh_v1:1343755879..1343755986Vicia fabaexon
Vfaba.Hedin2.R1.5g195720.1_vfh_v1-exonVfaba.Hedin2.R1.5g195720.1_vfh_v1-exon-chr5_vfh_v1:1343756670..1343756903Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g195720.1_vfh_v1-cdsVfaba.Hedin2.R1.5g195720.1_vfh_v1-cds-chr5_vfh_v1:1343755131..1343755272Vicia fabaCDS
Vfaba.Hedin2.R1.5g195720.1_vfh_v1-cdsVfaba.Hedin2.R1.5g195720.1_vfh_v1-cds-chr5_vfh_v1:1343755460..1343755524Vicia fabaCDS
Vfaba.Hedin2.R1.5g195720.1_vfh_v1-cdsVfaba.Hedin2.R1.5g195720.1_vfh_v1-cds-chr5_vfh_v1:1343755696..1343755812Vicia fabaCDS
Vfaba.Hedin2.R1.5g195720.1_vfh_v1-cdsVfaba.Hedin2.R1.5g195720.1_vfh_v1-cds-chr5_vfh_v1:1343755879..1343755986Vicia fabaCDS
Vfaba.Hedin2.R1.5g195720.1_vfh_v1-cdsVfaba.Hedin2.R1.5g195720.1_vfh_v1-cds-chr5_vfh_v1:1343756670..1343756903Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g195720.1_vfh_v1Vfaba.Hedin2.R1.5g195720.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.5g195720.1_vfh_v1Vfaba.Hedin2.R1.5g195720.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2I0INL2|A0A2I0INL2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_034615 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.037e-24
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0
Query:  145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQ---LDGEN 221
            +HLRKERFP+G+F KLKPRADGPF++LKR+GENAYK+EL  +Y VS T  VSDL PY  E+  +D G SL Q    DGEN
Sbjct:   96 IHLRKERFPQGRFGKLKPRADGPFRILKRVGENAYKVELLGDYGVSATFNVSDLLPYAEEDEGSDLGTSLFQPGESDGEN 175          
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2I0IXH7|A0A2I0IXH7_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_031158 PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.481e-23
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 0
Query:  145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQ---LDGEN 221
            +HL KERFP+G F KLKPRADGPF++LKR+GENAYK+ELP +Y VS T  VSDL PY  E+  ++ G SL Q    DGEN
Sbjct:   36 IHLCKERFPQGCFGKLKPRADGPFRILKRVGENAYKVELPRDYGVSATFNVSDLLPYAREDEGSNLGTSLFQPGENDGEN 115          
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2I0KJ23|A0A2I0KJ23_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_011076 PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.844e-23
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 0
Query:  145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQ---LDGEN 221
            +HLRKE FP+G+F KLKPRADGPF++LKR+GENAYK+ELP +Y VS T  VSDL PY GE+  +D G SL Q    DGEN
Sbjct:  364 IHLRKEWFPQGRFGKLKPRADGPFRILKRVGENAYKVELPGDYGVSATFNVSDLLPYAGEDEGSDLGTSLFQPGENDGEN 443          
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2I0IVM1|A0A2I0IVM1_PUNGR (Integrase catalytic domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_031575 PE=4 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.417e-22
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 0
Query:  145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQL---DGEN 221
            +HLRKE+FP+G+F KLKPRA+GPF++LKR+GENAYK+EL  +Y VS T  VS+L PY GEE  +D G SL QL   DG+N
Sbjct:  660 IHLRKEQFPQGRFGKLKPRAEGPFRILKRVGENAYKVELSGDYGVSPTFNVSNLLPYTGEEEGSDLGTSLFQLGENDGDN 739          
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1Q3AVB0|A0A1Q3AVB0_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03146 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.060e-22
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 0
Query:  145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQ 216
            +HLR+ERFP G+F KLKPRADGPFKVL+RI +NAYKIELP EY VS T  V++L PYY +E+  DS  +L Q
Sbjct:   37 IHLRRERFPVGRFGKLKPRADGPFKVLQRINDNAYKIELPGEYNVSGTFNVANLSPYYDDEA--DSRVNLSQ 106          
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1Q3C034|A0A1Q3C034_CEPFO (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_17117 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.018e-22
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 0
Query:  145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQLDGEN 221
            +HLR+ERFP G+F KLKPRAD PFKVL+RI +NAYKIELP EY V  T  ++DL PYY +E+  DS A+L Q  G++
Sbjct:   23 IHLRRERFPAGRFGKLKPRADCPFKVLQRINDNAYKIELPGEYNVYGTSNIADLSPYYDDEA--DSRANLFQGGGDD 97          
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2I0JBA0|A0A2I0JBA0_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_026115 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.737e-21
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 0
Query:  145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQ---LDGEN 221
            +HL KERFP+G+F KLKPR DGPF++LKR+GEN YK++LP +Y VS T  VSDL PY GE+  +D G SL Q    DGEN
Sbjct:  528 IHLCKERFPQGRFGKLKPRVDGPFRILKRVGENTYKVDLPRDYGVSATFNVSDLLPYAGEDEGSDLGTSLFQPGENDGEN 607          
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P5TJS6|A0A6P5TJS6_PRUAV (uncharacterized protein LOC110767928 OS=Prunus avium OX=42229 GN=LOC110767928 PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.837e-21
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 0
Query:  145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGAS 213
            +HLRKERFPRG+  KLKPRADGPFKVL+R+G+NAYKIELP  Y VS T  V+DL PY+G E   +SG S
Sbjct: 1018 IHLRKERFPRGKHGKLKPRADGPFKVLRRVGDNAYKIELPGNYGVSATFNVADLSPYHGSEDEENSGTS 1086          
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1Q3C354|A0A1Q3C354_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18109 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.474e-21
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0
Query:  145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQLDGEN 221
            +HLR+ERFP G+F KLKPRADGPFKVL+RI +NAYKIELP +Y VS T  V+ L PYY +E   DS A+L Q  G++
Sbjct:   37 IHLRQERFPAGRFGKLKPRADGPFKVLQRINDNAYKIELPGKYNVSGTFNVAYLSPYYDDEV--DSRANLSQGGGDD 111          
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1Q3CZM0|A0A1Q3CZM0_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28964 PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.548e-21
Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 0
Query:  145 VHLRKERFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFPYYGEESTNDSGASLLQLDGEN 221
            +HLR+ERFP G+F KL+PRA+GPFK L+RI +NAYKIELP EY VS T  V+DL PYY +E+  DS  ++ Q  G++
Sbjct:   37 IHLRRERFPAGKFEKLQPRANGPFKFLQRINDNAYKIELPGEYNVSGTFNVADLSPYYNDEA--DSRVNISQGGGDD 111          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2I0INL2|A0A2I0INL2_PUNGR3.037e-2463.75Uncharacterized protein OS=Punica granatum OX=2266... [more]
tr|A0A2I0IXH7|A0A2I0IXH7_PUNGR1.481e-2362.50Uncharacterized protein OS=Punica granatum OX=2266... [more]
tr|A0A2I0KJ23|A0A2I0KJ23_PUNGR1.844e-2365.00Uncharacterized protein OS=Punica granatum OX=2266... [more]
tr|A0A2I0IVM1|A0A2I0IVM1_PUNGR1.417e-2262.50Integrase catalytic domain-containing protein OS=P... [more]
tr|A0A1Q3AVB0|A0A1Q3AVB0_CEPFO3.060e-2265.28Uncharacterized protein OS=Cephalotus follicularis... [more]
tr|A0A1Q3C034|A0A1Q3C034_CEPFO9.018e-2261.04Uncharacterized protein (Fragment) OS=Cephalotus f... [more]
tr|A0A2I0JBA0|A0A2I0JBA0_PUNGR1.737e-2161.25Uncharacterized protein OS=Punica granatum OX=2266... [more]
tr|A0A6P5TJS6|A0A6P5TJS6_PRUAV2.837e-2168.12uncharacterized protein LOC110767928 OS=Prunus avi... [more]
tr|A0A1Q3C354|A0A1Q3C354_CEPFO3.474e-2162.34Uncharacterized protein OS=Cephalotus follicularis... [more]
tr|A0A1Q3CZM0|A0A1Q3CZM0_CEPFO3.548e-2158.44Uncharacterized protein OS=Cephalotus follicularis... [more]
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BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.5g195720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.5g195720.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g195720.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g195720.1; organism=Vicia faba; type=mRNA; length=666bp
ATGACATTATATTTTTGGGGTGGGGTTCTCCTGAAAAAAGGAAGTTATTT
CCTGGACAGACCATCTAATAAGGGCAACTGCGACGACGAAACCCCTTGCT
TTAGCTTATCTAAAAGCTTGGGGCGTGTAGCTCTCCGTACAATGAGGAGG
GCAGCATCTGCCTTTGAATGGAATCTAGCTAGGGCAAAAGGTATACCTCG
ACCTGGGGTGGATTGGAAGAAGAGCAAGGTCATTGGTTTGCTAAATAGAA
ATGGAGATGGTTCTTCTGGGTTAAAATCCCCGTCTTTGAATTGGCTCGAT
CTGTATTGGCCACATCCTCCATTGGGTAAAGGTGAACTCGGATGGGTGCG
CCAAGGGGTGAGGCTGGATAAAATCATTAGAGATGCCCGTGGGCTTGTGA
CTTGGGAATCTGTAGTCGTCTTAGGTGGTCCGGTTCATCTTCGAAAGGAG
CGTTTCCCGCGAGGACAATTTGCTAAGCTCAAGCCTAGAGCTGATGGACC
ATTCAAAGTTCTCAAACGCATTGGTGAAAATGCCTACAAGATTGAACTAC
CAGCTGAGTATGAGGTTTCAGAAACATTGAAAGTTTCTGATCTTTTTCCT
TATTATGGTGAAGAAAGCACTAACGACTCGGGGGCGAGTCTTCTTCAACT
TGACGGGGAAAACTAG
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protein sequence of Vfaba.Hedin2.R1.5g195720.1_vfh_v1

>Vfaba.Hedin2.R1.5g195720.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g195720.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g195720.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=221bp
MTLYFWGGVLLKKGSYFLDRPSNKGNCDDETPCFSLSKSLGRVALRTMRR
AASAFEWNLARAKGIPRPGVDWKKSKVIGLLNRNGDGSSGLKSPSLNWLD
LYWPHPPLGKGELGWVRQGVRLDKIIRDARGLVTWESVVVLGGPVHLRKE
RFPRGQFAKLKPRADGPFKVLKRIGENAYKIELPAEYEVSETLKVSDLFP
YYGEESTNDSGASLLQLDGEN
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mRNA from alignment at chr5:1343755131..1343756903+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.5g195720.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g195720.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g195720.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1343755131..1343756903+ (Vicia faba
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