Vfaba.Hedin2.R1.5g197800.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072U673|A0A072U673_MEDTR (RNA-binding (RRM/RBD/RNP motif) family protein OS=Medicago truncatula OX=3880 GN=25499746 PE=4 SV=1) HSP 1 Score: 299.671 bits (766), Expect = 1.085e-98 Identity = 184/257 (71.60%), Postives = 195/257 (75.88%), Query Frame = 0 Query: 63 SSNGS--QFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARR--------QKSPLPPPYTQ-GTKN---RESQQVQWYYPVGTPTPAPPSPF-HHHAIPFYGYTPTTTYIAPDHMNYSYNYNYNQKLNYGMGGVYVY-PTRQGIV---PVMH----PFYRTE---TMGVPAPQIFHPLPP-NYPPSITPTPT-TGECFKRVVV 291 S+NGS QFGDTTLTKVFVGGLAWETPKDTLREHFEKYG+ILEAVIISDK TGRSKGYGFVTFK+A++A KACEEPTVIINGRRANCNIAS GARR SP P PYTQ GTKN R QQVQWYYPV TPTP P S F HHHA+PFYGYTP TYIA DHM NYNYNQKL+YGMGG YVY P RQ IV P+M+ P YR+ MGVP PQIFH +Y PSITPT TGECFKRVVV Sbjct: 4 SNNGSPSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEEPTVIINGRRANCNIASLGARRPRSSPITPPPSPPPLPYTQGGTKNIHRRNQQQVQWYYPVVTPTP-PSSIFHHHHALPFYGYTP--TYIATDHM----NYNYNQKLSYGMGGGYVYPPPRQAIVGAMPIMYHHPAPVYRSTEAMAMGVPPPQIFHQTHQYHYAPSITPTTVGTGECFKRVVV 253
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072U4M6|A0A072U4M6_MEDTR (Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Medicago truncatula OX=3880 GN=25499746 PE=4 SV=1) HSP 1 Score: 286.189 bits (731), Expect = 2.505e-93 Identity = 179/258 (69.38%), Postives = 191/258 (74.03%), Query Frame = 0 Query: 63 SSNGS--QFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARR--------QKSPLPPPYTQ-GTKN---RESQQVQWYYPVGTPTPAPPSPFHHHAIPFYGYTPTTTYIAPDHMNYSYNYNYNQKLNYGMGGVYVY-PTRQGIV---PVMH----PFYRTE---TMGVPAPQIFHPLPP-NYPPSI---TPTPTTGECFKRVVV 291 S+NGS QFGDTTLTKVFVGGLAWETPKDTLREHFEKYG+ILEAVIISDK TGRSKGYGFVTFK+A++A KACEEPTVIINGRRANCNIAS GARR SP P PYTQ GTKN R QQVQWYYPV TPTP HHHA+PFYGYTP TYIA DHMNY+YN QKL+YGMGG YVY P RQ IV P+M+ P YR+ MGVP PQIFH +Y PSI T T TGECFKRVVV Sbjct: 4 SNNGSPSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEEPTVIINGRRANCNIASLGARRPRSSPITPPPSPPPLPYTQGGTKNIHRRNQQQVQWYYPVVTPTPPSSIFHHHHALPFYGYTP--TYIATDHMNYNYN---QQKLSYGMGGGYVYPPPRQAIVGAMPIMYHHPAPVYRSTEAMAMGVPPPQIFHQTHQYHYAPSITPTTGTVGTGECFKRVVV 256
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/TrEMBL
Match: tr|I3S2K4|I3S2K4_MEDTR (RRM domain-containing protein OS=Medicago truncatula OX=3880 PE=2 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 1.970e-92 Identity = 176/258 (68.22%), Postives = 190/258 (73.64%), Query Frame = 0 Query: 63 SSNGS--QFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARR--------QKSPLPPPYTQ-GTKN---RESQQVQWYYPVGTPTPAPPSPFHHHAIPFYGYTPTTTYIAPDHMNYSYNYNYNQKLNYGMGGVYVYP----TRQGIVPVMH----PFYRTE---TMGVPAPQIFHPLPP-NYPPSI---TPTPTTGECFKRVVV 291 S+NGS QFGDTTLTKVFVGGLAWETPKDTLREHFEKYG+ILEAVIISDK TGRSKGYGFVTFK+A++A KACEEPTVIINGRRANCNIAS GARR SP P PYTQ GTKN R QQVQWYYPV TPTP HHHA+PFYGYTP TYIA DHMNY+YN QKL+YGMGG YVYP T G +P+M+ P YR+ MGVP PQIFH +Y PSI T T TG+CFKRVVV Sbjct: 4 SNNGSPSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEEPTVIINGRRANCNIASLGARRPRSSPITPPPSPPPLPYTQGGTKNIHRRNQQQVQWYYPVVTPTPPSSIFHHHHALPFYGYTP--TYIATDHMNYNYN---QQKLSYGMGGGYVYPPPRQTIVGAMPIMYHHPAPVYRSTEAMAMGVPPPQIFHQTHQYHYAPSITPTTGTVGTGKCFKRVVV 256
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NM07|A0A2K3NM07_TRIPR (RNA-binding protein 38-like OS=Trifolium pratense OX=57577 GN=L195_g000475 PE=4 SV=1) HSP 1 Score: 272.707 bits (696), Expect = 3.479e-88 Identity = 159/225 (70.67%), Postives = 172/225 (76.44%), Query Frame = 0 Query: 67 SQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGAR--RQKSPLPPPYTQGTKNRESQQVQWYYPVGTPTPAPPSPFHH---HAIPFYGYTPTTTYIAPDHMNYSYNY--NYNQK-LNYGMGGVYVYPTRQGIVPVM-HPFYRTETMGVPAPQIFHPLPPNYPPSITPTPTT 282 SQFGDTTLTKVFVGGLAWETPKDTLREHF+KYG+ILEAVIISDK TGRSKGYGFVTFKE EAANKAC+EPT+IINGRRANCNIAS GAR R KS P T + S QVQWYYPV TPT P+PFHH H +PFY T P MNY+YNY +YNQK L+YG GG YVYP R G +PVM HP YRTE MGVPAPQI+H +Y PSITPTPTT Sbjct: 18 SQFGDTTLTKVFVGGLAWETPKDTLREHFQKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAANKACQEPTLIINGRRANCNIASLGARRPRTKSSSSPTATTPPSSPPSSQVQWYYPVATPT--MPTPFHHQHAHTLPFYIGT------DPHMMNYNYNYGFHYNQKLLSYGSGGSYVYP-RVGAMPVMYHPLYRTEAMGVPAPQIYH----HYAPSITPTPTT 229
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XWV3|A0A1S2XWV3_CICAR (probable RNA-binding protein ARP1 isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101503379 PE=4 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 6.282e-76 Identity = 158/243 (65.02%), Postives = 172/243 (70.78%), Query Frame = 0 Query: 63 SSNGSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARRQ--KSPLPPPYTQGTKNRES------QQVQWYYPVGTPTPAPPSPFHHHAIPFYGYTPTTTYIAPDHMNYSYNYNYNQKLNYGMGGVYVYPTRQGIVPVMH--PFYR--TETMGVPAPQIFHPLPPNYPPSITPTP---TTGECFKRVV 290 S+ +FGDTTLTKVFVGGLAWETPKDTLREHF+KYG ILEAVIISDK TGRSKGYGFVTFKEAEAA KACEEPTV+INGRRANCN+AS GARR ++ P Y+ TKNR + QQ QWYY PTP PPS FHHH PFYGYTP TYIA D MNY+YNYNYNQK+ YVYP + ++ H P Y TE MGVPAPQ F PSI PT TGECFKRVV Sbjct: 7 SNKVGEFGDTTLTKVFVGGLAWETPKDTLREHFQKYGHILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEEPTVMINGRRANCNLASLGARRPIIRTSSPQEYSV-TKNRSNSSSNHQQQPQWYY----PTPTPPSTFHHH-FPFYGYTP-PTYIATD-MNYNYNYNYNQKVR------YVYPRQMPVIYHHHQYPIYHTTTEAMGVPAPQFFP------APSIIPTTGPVGTGECFKRVV 229
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3E357|A0A1S3E357_CICAR (probable RNA-binding protein ARP1 isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101503379 PE=4 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 1.817e-74 Identity = 147/243 (60.49%), Postives = 160/243 (65.84%), Query Frame = 0 Query: 63 SSNGSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARRQ--KSPLPPPYTQGTKNRES------QQVQWYYPVGTPTPAPPSPFHHHAIPFYGYTPTTTYIAPDHMNYSYNYNYNQKLNYGMGGVYVYPTRQGIVPVMH--PFYR--TETMGVPAPQIFHPLPPNYPPSITPTP---TTGECFKRVV 290 S+ +FGDTTLTKVFVGGLAWETPKDTLREHF+KYG ILEAVIISDK TGRSKGYGFVTFKEAEAA KACEEPTV+INGRRANCN+AS GARR ++ P Y+ TKNR + QQ QWYY PTP PPS FHHH PFYGYTP TYIA D + YVYP + ++ H P Y TE MGVPAPQ F PSI PT TGECFKRVV Sbjct: 7 SNKVGEFGDTTLTKVFVGGLAWETPKDTLREHFQKYGHILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEEPTVMINGRRANCNLASLGARRPIIRTSSPQEYSV-TKNRSNSSSNHQQQPQWYY----PTPTPPSTFHHH-FPFYGYTP-PTYIATDMNYNYNYNYNQVR--------YVYPRQMPVIYHHHQYPIYHTTTEAMGVPAPQFFP------APSIIPTTGPVGTGECFKRVV 228
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2I4HRA7|A0A2I4HRA7_JUGRE (probable RNA-binding protein ARP1 OS=Juglans regia OX=51240 GN=LOC109020627 PE=4 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 1.891e-74 Identity = 141/248 (56.85%), Postives = 162/248 (65.32%), Query Frame = 0 Query: 60 FTMSSNG-SQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARRQKSPLPPPYTQGTKNRE-------SQQVQWYYPVGTPTPAPPSPFHHHAIPFYGYTPTTTYIAPDHMNYSYNYNYNQKLNYGMGGVY-------VYPTRQGIV---------PVMHPFYRTETMGVPAPQIFHP---LPPNYPPSITPTP 280 TMS+N FGDTTLTKVFVGGLAWETPK+ +REHFEKYGEILEAVIISDK TGRSKGYGFVTFKEAEAA KACE+ + IINGRRANCN+AS GARR +S P QG+ + QVQWYYP GT PPSPFHH +PFYGY+P TYIA DH+ +YN KLNY GG Y VYP Q IV P H +++++T+G+PA F P P N P+I P Sbjct: 1 MTMSNNNMGLFGDTTLTKVFVGGLAWETPKEAMREHFEKYGEILEAVIISDKVTGRSKGYGFVTFKEAEAAKKACEDASPIINGRRANCNLASLGARRPRSASTTPPQQGSNGGARPATGAPANQVQWYYPAGT----PPSPFHHQPLPFYGYSP--TYIATDHI------SYNHKLNY-TGGAYMNGHYSQVYPAGQPIVGGNTLMSMYPYYHNYHQSQTVGLPA-HFFSPSAARPMNAVPAIMSKP 234
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P6AI66|A0A6P6AI66_DURZI (probable RNA-binding protein ARP1 isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111309834 PE=4 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 3.608e-74 Identity = 145/274 (52.92%), Postives = 166/274 (60.58%), Query Frame = 0 Query: 60 FTMSSNGSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARRQKSPLPPPYTQGTK-------NRESQQVQWYYPVGTPTPAPPSPF---HHHAIPFYGYTPTTTYIAPDHMNYSYNYNYNQKLNYGMGGVY-------VYPTRQGIVPV-----MHPFY---RTETMGVPAPQIFHPLPPNYPPSITPTPT-------------------TGECFKRV 289 TMS+N QFGDTTLTKVFVGGLAWETPK+ +REHFEKYG+ILEAVIISDK TGRSKGYGFVTFK+AEAA KACE+ T IINGRRANCN+AS GARR +S P QG+ + VQWYYP GTP SPF HH A+PFYGY+P TYIA D YN K++Y GG Y VYP Q I+ M+PFY +++TMG+PA H PP IT PT TGE FK+V Sbjct: 1 MTMSNNIGQFGDTTLTKVFVGGLAWETPKEAMREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDAEAAKKACEDATPIINGRRANCNLASLGARRPRSASAAPLQQGSNAGPRVPSAAPANHVQWYYPAGTPA----SPFHHQHHQAVPFYGYSP--TYIATD-------IGYNHKVSY-TGGSYMNGHFSQVYPAGQAIIGANTLMPMYPFYHYHQSQTMGLPA-AANHIFPPTTAGPITTIPTAAIISKPAAAIAPNSGAVGTGESFKKV 259
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1J7IDI6|A0A1J7IDI6_LUPAN (RRM domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_23160 PE=4 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 7.656e-74 Identity = 144/236 (61.02%), Postives = 160/236 (67.80%), Query Frame = 0 Query: 63 SSNGSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEE-PTVIINGRRANCNIASHGARRQK--SPLPPPYTQ--------GTKNRES-----QQVQWYYPVGTPTPAPPSPFHHHAIPFYGYTPTTTYIAPDHMNYSYNYNYNQKLNYGMGGVY--------VYPTRQGIVPV-----MHPFYR--TETMGVPAPQIFHP 267 ++N QFGDTTLTKVFVGGLAWETPK+ LREHF+KYGEILEAVIISDK TGRSKGYGFVTFKEAEAA KACE+ T++INGR AN N+AS GARR + S PP+ Q G +N S VQWYYPVGTP SPFHH A+P+YGYTP TYIAP+ NYNYNQKL YG GG Y VYP RQ I+ M+P Y TETMGVPA FHP Sbjct: 6 NNNFGQFGDTTLTKVFVGGLAWETPKEALREHFDKYGEILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEDQATLVINGRLANYNLASLGARRPRFSSNASPPHPQPQEGSNGGGPRNNTSSTPPPNHVQWYYPVGTPA----SPFHHQALPYYGYTP--TYIAPN-----VNYNYNQKLGYGSGGAYMNAHHVSHVYP-RQAIIGGNTLMPMYPVYHHPTETMGVPA-HYFHP 228
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P6AIE2|A0A6P6AIE2_DURZI (probable RNA-binding protein ARP1 isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111309834 PE=4 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 1.063e-73 Identity = 139/248 (56.05%), Postives = 159/248 (64.11%), Query Frame = 0 Query: 60 FTMSSNGSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARRQKSPLPPPYTQGTK-------NRESQQVQWYYPVGTPTPAPPSPF---HHHAIPFYGYTPTTTYIAPDHMNYSYNYNYNQKLNYGMGGVY-------VYPTRQGIVPV-----MHPFY---RTETMGVPAPQIFHPLPPNYPPSITPTPTT 282 TMS+N QFGDTTLTKVFVGGLAWETPK+ +REHFEKYG+ILEAVIISDK TGRSKGYGFVTFK+AEAA KACE+ T IINGRRANCN+AS GARR +S P QG+ + VQWYYP GTP SPF HH A+PFYGY+P TYIA D YN K++Y GG Y VYP Q I+ M+PFY +++TMG+PA H PP IT PT Sbjct: 1 MTMSNNIGQFGDTTLTKVFVGGLAWETPKEAMREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDAEAAKKACEDATPIINGRRANCNLASLGARRPRSASAAPLQQGSNAGPRVPSAAPANHVQWYYPAGTPA----SPFHHQHHQAVPFYGYSP--TYIATD-------IGYNHKVSY-TGGSYMNGHFSQVYPAGQAIIGANTLMPMYPFYHYHQSQTMGLPA-AANHIFPPTTAGPITTIPTA 233
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9M1S3|ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 1.534e-50 Identity = 97/176 (55.11%), Postives = 116/176 (65.91%), Query Frame = 0 Query: 69 FGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARRQKSPLPPPYTQGTKNRE-------SQQVQWYYPVGTPTPAPPSPFHHHAIPFYGYTPTTTYIAPDHMNYSYNYNYNQKLNYGMGGVYV 237 FGDT LTKVFVGGLAW+T K+ + +HF KYG+ILEAVIISDK T RSKGYGFVTFK+A+AA +ACE+ T IINGRRANCN+AS G R +KSP QG KN QWYYP G T +H A+PFYGY + Y+AP N +NQK+ Y +GG Y+ Sbjct: 11 FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATPPHVGNHSQWYYPSGF-TNQQHQQQNHQAVPFYGY--PSAYVAP-------NMTFNQKVGY-VGGTYM 175
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9H0Z9|RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 2.548e-27 Identity = 50/100 (50.00%), Postives = 73/100 (73.00%), Query Frame = 0 Query: 56 RSIRFTMSSNGSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGAR 155 R + + +GSQ DTT TK+FVGGL + T +LR++FE +G+I EAV+I+D+ TG+S+GYGFVT + AA +AC++P II+GR+AN N+A GA+ Sbjct: 16 RPLAAPGAMHGSQ-KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK 114
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q76LC6|RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.775e-27 Identity = 47/85 (55.29%), Postives = 67/85 (78.82%), Query Frame = 0 Query: 71 DTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGAR 155 DTT TK+FVGGL + T +LR++FE +GEI EAV+I+D+ TG+S+GYGFVT + AA++AC++P II+GR+AN N+A GA+ Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAK 91
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q5ZJX4|RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.640e-27 Identity = 46/85 (54.12%), Postives = 66/85 (77.65%), Query Frame = 0 Query: 71 DTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGAR 155 DTT TK+FVGGL + T +LR++FE +G+I EAV+I+D+ TG+S+GYGFVT + AA +AC++P II+GR+AN N+A GA+ Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK 91
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6DIV4|RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.747e-27 Identity = 46/85 (54.12%), Postives = 66/85 (77.65%), Query Frame = 0 Query: 71 DTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGAR 155 DTT TK+FVGGL + T +LR++FE +G+I EAV+I+D+ TG+S+GYGFVT + AA +AC++P II+GR+AN N+A GA+ Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPNPIIDGRKANVNLAYLGAK 91
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9I8B3|RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.540e-26 Identity = 46/85 (54.12%), Postives = 66/85 (77.65%), Query Frame = 0 Query: 71 DTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGAR 155 DTT TK+FVGGL + T +LR++FE +G+I EAV+I+D+ TG+S+GYGFVT + AA +AC++P II+GR+AN N+A GA+ Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK 91
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q7T3I7|RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 1.809e-26 Identity = 45/85 (52.94%), Postives = 65/85 (76.47%), Query Frame = 0 Query: 71 DTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGAR 155 DTT TK+FVGGL + T +LR++FE +G+I EAV+I+D+ T +S+GYGFVT + AA +AC++P II+GR+AN N+A GA+ Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAERACKDPNPIIDGRKANVNLAYLGAK 91
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6GQD3|RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 2.180e-26 Identity = 46/85 (54.12%), Postives = 66/85 (77.65%), Query Frame = 0 Query: 71 DTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGAR 155 DTT TK+FVGGL + T +LR++FE +G+I EAV+I+D+ TG+S+GYGFVT + AA +AC++P II+GR+AN N+A GA+ Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK 91
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9BX46|RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 2.276e-26 Identity = 47/85 (55.29%), Postives = 66/85 (77.65%), Query Frame = 0 Query: 71 DTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGAR 155 DTT TK+FVGGL + T +LR++FE +GEI EAV+I+D+ TG+S+GYGFVT + AA +AC++P II+GR+AN N+A GA+ Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK 91
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q5ZMA3|RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 2.421e-26 Identity = 46/85 (54.12%), Postives = 66/85 (77.65%), Query Frame = 0 Query: 71 DTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGAR 155 DTT TK+FVGGL + T +LR++FE +G+I EAV+I+D+ TG+S+GYGFVT + AA +AC++P II+GR+AN N+A GA+ Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK 91
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. Araport11
Match: AT3G54770.1 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr3:20273863-20275827 REVERSE LENGTH=261 | 201606) HSP 1 Score: 170.629 bits (431), Expect = 1.569e-51 Identity = 97/176 (55.11%), Postives = 116/176 (65.91%), Query Frame = 0 Query: 69 FGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARRQKSPLPPPYTQGTKNRE-------SQQVQWYYPVGTPTPAPPSPFHHHAIPFYGYTPTTTYIAPDHMNYSYNYNYNQKLNYGMGGVYV 237 FGDT LTKVFVGGLAW+T K+ + +HF KYG+ILEAVIISDK T RSKGYGFVTFK+A+AA +ACE+ T IINGRRANCN+AS G R +KSP QG KN QWYYP G T +H A+PFYGY + Y+AP N +NQK+ Y +GG Y+ Sbjct: 11 FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATPPHVGNHSQWYYPSGF-TNQQHQQQNHQAVPFYGY--PSAYVAP-------NMTFNQKVGY-VGGTYM 175
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. Araport11
Match: AT3G54770.3 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr3:20274523-20275827 REVERSE LENGTH=260 | 201606) HSP 1 Score: 170.244 bits (430), Expect = 1.912e-51 Identity = 97/176 (55.11%), Postives = 116/176 (65.91%), Query Frame = 0 Query: 69 FGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARRQKSPLPPPYTQGTKNRE-------SQQVQWYYPVGTPTPAPPSPFHHHAIPFYGYTPTTTYIAPDHMNYSYNYNYNQKLNYGMGGVYV 237 FGDT LTKVFVGGLAW+T K+ + +HF KYG+ILEAVIISDK T RSKGYGFVTFK+A+AA +ACE+ T IINGRRANCN+AS G R +KSP QG KN QWYYP G T +H A+PFYGY + Y+AP N +NQK+ Y +GG Y+ Sbjct: 11 FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATPPHVGNHSQWYYPSGF-TNQQHQQQNHQAVPFYGY--PSAYVAP-------NMTFNQKVGY-VGGTYM 175
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. Araport11
Match: AT1G76460.1 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:28686932-28688506 REVERSE LENGTH=285 | 201606) HSP 1 Score: 151.369 bits (381), Expect = 6.346e-44 Identity = 70/96 (72.92%), Postives = 82/96 (85.42%), Query Frame = 0 Query: 67 SQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARRQKSPLP 162 S FGDTT TKVFVGGLAWET +TLR+HFE+YGEILEAV+I+DK TGRSKGYGFVTF++ EAA +AC +PT II+GRRANCN+AS G R + PLP Sbjct: 16 SPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLG--RPRPPLP 109
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. Araport11
Match: AT1G22910.2 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:8105808-8107618 FORWARD LENGTH=242 | 201606) HSP 1 Score: 145.206 bits (365), Expect = 6.320e-42 Identity = 66/99 (66.67%), Postives = 82/99 (82.83%), Query Frame = 0 Query: 64 SNGSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARRQKSPLP 162 + G GDTT TKVFVGGLAWET K+T+++HFE++GEILEAV+I+DKA+GRSKGYGFVTF+EAEAA AC + T +I+GRRANCN+AS G +R K P Sbjct: 2 AGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRANCNLASLGLQRSKPSTP 100
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. Araport11
Match: AT1G20880.3 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:7262879-7264834 REVERSE LENGTH=274 | 201606) HSP 1 Score: 145.591 bits (366), Expect = 9.172e-42 Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 0 Query: 67 SQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARR 156 S FGDTT TKVFVGGLAWET +TLR HF++YG+ILEAV+I+DK TGRSKGYGFVTF++ EAA +AC +PT II+GRRANCN+AS G R Sbjct: 16 SPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSR 105
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. Araport11
Match: AT1G20880.2 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:7262879-7264834 REVERSE LENGTH=274 | 201606) HSP 1 Score: 145.591 bits (366), Expect = 9.172e-42 Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 0 Query: 67 SQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARR 156 S FGDTT TKVFVGGLAWET +TLR HF++YG+ILEAV+I+DK TGRSKGYGFVTF++ EAA +AC +PT II+GRRANCN+AS G R Sbjct: 16 SPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSR 105
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. Araport11
Match: AT1G20880.1 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:7262879-7264834 REVERSE LENGTH=274 | 201606) HSP 1 Score: 145.591 bits (366), Expect = 9.172e-42 Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 0 Query: 67 SQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARR 156 S FGDTT TKVFVGGLAWET +TLR HF++YG+ILEAV+I+DK TGRSKGYGFVTF++ EAA +AC +PT II+GRRANCN+AS G R Sbjct: 16 SPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSR 105
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. Araport11
Match: AT1G22910.1 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:8105808-8107659 FORWARD LENGTH=249 | 201606) HSP 1 Score: 144.821 bits (364), Expect = 9.246e-42 Identity = 66/99 (66.67%), Postives = 82/99 (82.83%), Query Frame = 0 Query: 64 SNGSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARRQKSPLP 162 + G GDTT TKVFVGGLAWET K+T+++HFE++GEILEAV+I+DKA+GRSKGYGFVTF+EAEAA AC + T +I+GRRANCN+AS G +R K P Sbjct: 2 AGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRANCNLASLGLQRSKPSTP 100
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. Araport11
Match: AT1G22910.3 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:8105808-8107949 FORWARD LENGTH=347 | 201606) HSP 1 Score: 145.591 bits (366), Expect = 4.503e-41 Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 0 Query: 64 SNGSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARRQKSPLPPPYTQGTK 170 + G GDTT TKVFVGGLAWET K+T+++HFE++GEILEAV+I+DKA+GRSKGYGFVTF+EAEAA AC + T +I+GRRANCN+AS G +R K P P + G + Sbjct: 2 AGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRANCNLASLGLQRSK-PSTPNHGGGGR 107
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. Araport11
Match: AT2G46780.2 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr2:19229516-19231043 FORWARD LENGTH=336 | 201606) HSP 1 Score: 142.51 bits (358), Expect = 6.235e-40 Identity = 64/115 (55.65%), Postives = 86/115 (74.78%), Query Frame = 0 Query: 54 ILRSIRFTMSSNGSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVIINGRRANCNIASHGARRQKSPLPPPYTQG 168 + + +F M + DT LTK+FVGGLAWET +DT+R +FE++GEI+EAV+I+DK TGRSKGYGFVTFKEAEAA +AC+ +I+GRRANCN+A GA++ + P P + G Sbjct: 1 MAQQRQFQMEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTG 115 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.5g197800.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.5g197800.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g197800.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g197800.1; organism=Vicia faba; type=mRNA; length=876bpback to top protein sequence of Vfaba.Hedin2.R1.5g197800.1_vfh_v1 >Vfaba.Hedin2.R1.5g197800.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g197800.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g197800.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=291bpback to top mRNA from alignment at chr5:1359011705..1359012960+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.5g197800.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g197800.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g197800.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1359011705..1359012960+ (Vicia fababack to top |