Vfaba.Tiffany.R1.1g103480.1

Transcript Overview
NameVfaba.Tiffany.R1.1g103480.1
Unique NameVfaba.Tiffany.R1.1g103480.1_tif_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length459
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr1Schromosomechr1S:900839909..900840939 -Vicia faba cv. Tiffany genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
tifzwsR096Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifzwsR131Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifzwsR135Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifL125Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL188Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL598Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cctifL0402Cajanus cajan Asha genome v1.0Cajanus cajan
crtifL746Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
tiftifL081Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifL029Pisum sativum Cameor genome v1aPisum sativum
pstifL050Pisum sativum Cameor genome v1aPisum sativum
tiftifR112Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifL078Pisum sativum Cameor genome v1aPisum sativum
pstifL201Pisum sativum Cameor genome v1aPisum sativum
tifvfhR071Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhR078Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuR157Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvuR160Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvfhR099Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuR180Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvuR193Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
antifL0014Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caitifL176Cicer arietinum ICC 4958 genome v2Cicer arietinum
caitifL177Cicer arietinum ICC 4958 genome v2Cicer arietinum
caitifL197Cicer arietinum ICC 4958 genome v2Cicer arietinum
caitifL231Cicer arietinum ICC 4958 genome v2Cicer arietinum
caitifL816Cicer arietinum ICC 4958 genome v2Cicer arietinum
antifL0658Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0875Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL1199Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
tifvrvR134Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvrvR154Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvrvR165Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvrvR183Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvssR139Vicia sativa cv. Studenica genome v1.0Vicia sativa
tifvssR189Vicia sativa cv. Studenica genome v1.0Vicia sativa
cantifL108Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cantifL153Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cantifL535Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.1g103480Vfaba.Tiffany.R1.1g103480_tif_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.1g103480.1_tif_v1-exonVfaba.Tiffany.R1.1g103480.1_tif_v1-exon-chr1S_tif_v1:900839909..900839965Vicia fabaexon
Vfaba.Tiffany.R1.1g103480.1_tif_v1-exonVfaba.Tiffany.R1.1g103480.1_tif_v1-exon-chr1S_tif_v1:900840066..900840152Vicia fabaexon
Vfaba.Tiffany.R1.1g103480.1_tif_v1-exonVfaba.Tiffany.R1.1g103480.1_tif_v1-exon-chr1S_tif_v1:900840431..900840495Vicia fabaexon
Vfaba.Tiffany.R1.1g103480.1_tif_v1-exonVfaba.Tiffany.R1.1g103480.1_tif_v1-exon-chr1S_tif_v1:900840603..900840646Vicia fabaexon
Vfaba.Tiffany.R1.1g103480.1_tif_v1-exonVfaba.Tiffany.R1.1g103480.1_tif_v1-exon-chr1S_tif_v1:900840734..900840939Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.1g103480.1_tif_v1-cdsVfaba.Tiffany.R1.1g103480.1_tif_v1-cds-chr1S_tif_v1:900839909..900839965Vicia fabaCDS
Vfaba.Tiffany.R1.1g103480.1_tif_v1-cdsVfaba.Tiffany.R1.1g103480.1_tif_v1-cds-chr1S_tif_v1:900840066..900840152Vicia fabaCDS
Vfaba.Tiffany.R1.1g103480.1_tif_v1-cdsVfaba.Tiffany.R1.1g103480.1_tif_v1-cds-chr1S_tif_v1:900840431..900840495Vicia fabaCDS
Vfaba.Tiffany.R1.1g103480.1_tif_v1-cdsVfaba.Tiffany.R1.1g103480.1_tif_v1-cds-chr1S_tif_v1:900840603..900840646Vicia fabaCDS
Vfaba.Tiffany.R1.1g103480.1_tif_v1-cdsVfaba.Tiffany.R1.1g103480.1_tif_v1-cds-chr1S_tif_v1:900840734..900840939Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.1g103480.1_tif_v1Vfaba.Tiffany.R1.1g103480.1_tif_v1Vicia fabapolypeptide
Vfaba.Tiffany.R1.1g103480.1_tif_v1Vfaba.Tiffany.R1.1g103480.1_tif_v1-proteinVicia fabapolypeptide


Homology
[Close]
BLAST of Vfaba.Tiffany.R1.1g103480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NVH5|A0A2K3NVH5_TRIPR (LINES_C domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g003496 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.531e-14
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 0 
Query:  102 LARKVNLLAVENQFVQHVAVNAVVLISKFMFTSGKNWDEFVHLLCCSLEMA 152
            L + VNLL V+++FVQHVAVNA+VLIS+F+FT+G NWD+F+H LC SLEMA
Sbjct:   96 LTKLVNLLTVKSEFVQHVAVNALVLISEFVFTTGNNWDDFIHFLCVSLEMA 146
[Close]
BLAST of Vfaba.Tiffany.R1.1g103480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3ECX6|A0A1S3ECX6_CICAR (uncharacterized protein LOC101515375 OS=Cicer arietinum OX=3827 GN=LOC101515375 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.990e-13
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0 
Query:  102 LARKVNLLAVENQFVQHVAVNAVVLISKFMFTSGKNWDEFVHLLCCSLEMA 152
            + + V LL  +++FVQHVAVNA+VL SKF+ T+G NWDEF+HLLCCSLEMA
Sbjct:   82 VTKMVILLTFKSEFVQHVAVNALVLTSKFVSTTGNNWDEFIHLLCCSLEMA 132
[Close]
BLAST of Vfaba.Tiffany.R1.1g103480.1 vs. UniProtKB/TrEMBL
Match: tr|K7K6S1|K7K6S1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100812484 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.352e-12
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:  108 LLAVENQFVQHVAVNAVVLISKFMFTSGKNWDEFVHLLCCSLEMA 152
            LL V+++FVQHV VNA+VL+SKF++T G NWD F+HLLCCSLEMA
Sbjct:   94 LLTVKSEFVQHVVVNALVLVSKFLYTMGNNWDGFIHLLCCSLEMA 138
[Close]
BLAST of Vfaba.Tiffany.R1.1g103480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0KTB3|A0A0R0KTB3_SOYBN (LINES_N domain-containing protein OS=Glycine max OX=3847 GN=100812484 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.416e-12
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:  108 LLAVENQFVQHVAVNAVVLISKFMFTSGKNWDEFVHLLCCSLEMA 152
            LL V+++FVQHV VNA+VL+SKF++T G NWD F+HLLCCSLEMA
Sbjct:   94 LLTVKSEFVQHVVVNALVLVSKFLYTMGNNWDGFIHLLCCSLEMA 138
[Close]
BLAST of Vfaba.Tiffany.R1.1g103480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445LKK8|A0A445LKK8_GLYSO (LINES_N domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_003132 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.746e-12
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:  108 LLAVENQFVQHVAVNAVVLISKFMFTSGKNWDEFVHLLCCSLEMA 152
            LL V+++FVQHV VNA+VL+SKF++T G NWD F+HLLCCSLEMA
Sbjct:   94 LLTVKSEFVQHVVVNALVLVSKFVYTMGNNWDGFIHLLCCSLEMA 138
[Close]
BLAST of Vfaba.Tiffany.R1.1g103480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445LK88|A0A445LK88_GLYSO (LINES_C domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_003132 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.762e-12
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:  108 LLAVENQFVQHVAVNAVVLISKFMFTSGKNWDEFVHLLCCSLEMA 152
            LL V+++FVQHV VNA+VL+SKF++T G NWD F+HLLCCSLEMA
Sbjct:   94 LLTVKSEFVQHVVVNALVLVSKFVYTMGNNWDGFIHLLCCSLEMA 138
[Close]
BLAST of Vfaba.Tiffany.R1.1g103480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445LK90|A0A445LK90_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_003132 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.914e-12
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:  108 LLAVENQFVQHVAVNAVVLISKFMFTSGKNWDEFVHLLCCSLEMA 152
            LL V+++FVQHV VNA+VL+SKF++T G NWD F+HLLCCSLEMA
Sbjct:   94 LLTVKSEFVQHVVVNALVLVSKFVYTMGNNWDGFIHLLCCSLEMA 138
[Close]
BLAST of Vfaba.Tiffany.R1.1g103480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445LKC1|A0A445LKC1_GLYSO (LINES_N domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_003132 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.996e-12
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:  108 LLAVENQFVQHVAVNAVVLISKFMFTSGKNWDEFVHLLCCSLEMA 152
            LL V+++FVQHV VNA+VL+SKF++T G NWD F+HLLCCSLEMA
Sbjct:   94 LLTVKSEFVQHVVVNALVLVSKFVYTMGNNWDGFIHLLCCSLEMA 138
[Close]
BLAST of Vfaba.Tiffany.R1.1g103480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445LK87|A0A445LK87_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_003132 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.247e-12
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:  108 LLAVENQFVQHVAVNAVVLISKFMFTSGKNWDEFVHLLCCSLEMA 152
            LL V+++FVQHV VNA+VL+SKF++T G NWD F+HLLCCSLEMA
Sbjct:    3 LLTVKSEFVQHVVVNALVLVSKFVYTMGNNWDGFIHLLCCSLEMA 47
[Close]
BLAST of Vfaba.Tiffany.R1.1g103480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072TUH7|A0A072TUH7_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25501673 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.731e-12
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 0 
Query:  102 LARKVNLLAVENQFVQHVAVNAVVLISKFMFTSGKNWDEFVHLLCCSLEMA 152
            + + VNLL V+++FVQHVAVNA+VL S+F+ T+G +W EF+HLLCCSLE A
Sbjct:   79 VTKMVNLLTVKSEFVQHVAVNALVLTSEFLSTTGNSWAEFIHLLCCSLETA 129
The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.1g103480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2K3NVH5|A0A2K3NVH5_TRIPR5.531e-1468.63LINES_C domain-containing protein OS=Trifolium pra... [more]
tr|A0A1S3ECX6|A0A1S3ECX6_CICAR4.990e-1366.67uncharacterized protein LOC101515375 OS=Cicer arie... [more]
tr|K7K6S1|K7K6S1_SOYBN1.352e-1271.11Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
tr|A0A0R0KTB3|A0A0R0KTB3_SOYBN1.416e-1271.11LINES_N domain-containing protein OS=Glycine max O... [more]
tr|A0A445LKK8|A0A445LKK8_GLYSO1.746e-1271.11LINES_N domain-containing protein OS=Glycine soja ... [more]
tr|A0A445LK88|A0A445LK88_GLYSO1.762e-1271.11LINES_C domain-containing protein OS=Glycine soja ... [more]
tr|A0A445LK90|A0A445LK90_GLYSO1.914e-1271.11Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
tr|A0A445LKC1|A0A445LKC1_GLYSO1.996e-1271.11LINES_N domain-containing protein OS=Glycine soja ... [more]
tr|A0A445LK87|A0A445LK87_GLYSO2.247e-1271.11Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
tr|A0A072TUH7|A0A072TUH7_MEDTR7.731e-1262.75Uncharacterized protein OS=Medicago truncatula OX=... [more]
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BLAST of Vfaba.Tiffany.R1.1g103480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Tiffany.R1.1g103480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Tiffany.R1.1g103480.1_tif_v1 ID=Vfaba.Tiffany.R1.1g103480.1_tif_v1; Name=Vfaba.Tiffany.R1.1g103480.1; organism=Vicia faba; type=mRNA; length=459bp
ATGCTATCATTAACGTTTAGAAATCTTAAAGTTGTTTATAAAAATTTTGG
ATTGGGAAATTATATCAAGCTTTGTGAGTGGCCACTGGCGGAGCCAGCGT
CCGGCCAGCTAGGGCAGCTGCCCAGGCTCGGCCTCCTCGAATCACTTTCA
TGGAACTCTTCTCTCCCTCAATACGATGAACAAGACGACAACTCTTTCAC
TTTTCAAACTTCTTTGTTTCAGAATGTTTATGGTTTGGTGCATTTTTATG
CTAAATGGAGGAATGCTAGCATATTAAAAATGTCGAAAAATACAGCTTTT
GGTCTTGCCCGCAAGGTGAATTTGTTAGCTGTTGAAAATCAATTTGTTCA
ACACGTTGCGGTCAATGCTGTTGTCTTAATTTCAAAGTTTATGTTCACTT
CAGGGAAAAATTGGGATGAATTCGTCCATTTGTTATGTTGTTCCTTAGAA
ATGGCTTGA
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protein sequence of Vfaba.Tiffany.R1.1g103480.1_tif_v1

>Vfaba.Tiffany.R1.1g103480.1_tif_v1 ID=Vfaba.Tiffany.R1.1g103480.1_tif_v1; Name=Vfaba.Tiffany.R1.1g103480.1_tif_v1; organism=Vicia faba; type=polypeptide; length=152bp
MLSLTFRNLKVVYKNFGLGNYIKLCEWPLAEPASGQLGQLPRLGLLESLS
WNSSLPQYDEQDDNSFTFQTSLFQNVYGLVHFYAKWRNASILKMSKNTAF
GLARKVNLLAVENQFVQHVAVNAVVLISKFMFTSGKNWDEFVHLLCCSLE
MA
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mRNA from alignment at chr1S:900839909..900840939-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Tiffany.R1.1g103480.1_tif_v1 ID=Vfaba.Tiffany.R1.1g103480.1_tif_v1; Name=Vfaba.Tiffany.R1.1g103480.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:900839909..900840939- (Vicia faba
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