Vfaba.Tiffany.R1.2g113200.1

Transcript Overview
NameVfaba.Tiffany.R1.2g113200.1
Unique NameVfaba.Tiffany.R1.2g113200.1_tif_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length735
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr2chromosomechr2:863876652..863877671 -Vicia faba cv. Tiffany genome v1.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g113200Vfaba.Tiffany.R1.2g113200_tif_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g113200.1_tif_v1-exonVfaba.Tiffany.R1.2g113200.1_tif_v1-exon-chr2_tif_v1:863876652..863877158Vicia fabaexon
Vfaba.Tiffany.R1.2g113200.1_tif_v1-exonVfaba.Tiffany.R1.2g113200.1_tif_v1-exon-chr2_tif_v1:863877237..863877360Vicia fabaexon
Vfaba.Tiffany.R1.2g113200.1_tif_v1-exonVfaba.Tiffany.R1.2g113200.1_tif_v1-exon-chr2_tif_v1:863877568..863877671Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g113200.1_tif_v1-cdsVfaba.Tiffany.R1.2g113200.1_tif_v1-cds-chr2_tif_v1:863876652..863877158Vicia fabaCDS
Vfaba.Tiffany.R1.2g113200.1_tif_v1-cdsVfaba.Tiffany.R1.2g113200.1_tif_v1-cds-chr2_tif_v1:863877237..863877360Vicia fabaCDS
Vfaba.Tiffany.R1.2g113200.1_tif_v1-cdsVfaba.Tiffany.R1.2g113200.1_tif_v1-cds-chr2_tif_v1:863877568..863877671Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g113200.1_tif_v1Vfaba.Tiffany.R1.2g113200.1_tif_v1Vicia fabapolypeptide
Vfaba.Tiffany.R1.2g113200.1_tif_v1Vfaba.Tiffany.R1.2g113200.1_tif_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392LYM3|A0A392LYM3_9FABA (Sister chromatid cohesion protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0000821 PE=4 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 9.235e-96
Identity = 153/217 (70.51%), Postives = 170/217 (78.34%), Query Frame = 0
Query:   53 IHCSANLPDSLRQASSSNSVLEIP--------------------------RLASVKTQDASELKSTMENLVTDLLTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVARLKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQLAAEGIICRTE 243
            IHCSANLPD+LRQASS NSVLE+                           RLASVK QDASELKS MENLVTDLLTTLNLPEYPASASILEVLCAILI N G++SKDFA+RSMAIDILGTI ARLK DA+ICS+EKFWVLQDLLS++ AP +YPKDTCC+CLGGR ENLF CSGCNRLFH +CLDI+E+EV N+NWYCHMCICSKQL      C ++
Sbjct:  126 IHCSANLPDTLRQASSGNSVLEVSVDASYPTKCRNEVREACCLFWSRVLQRLASVKAQDASELKSIMENLVTDLLTTLNLPEYPASASILEVLCAILINNAGSNSKDFAARSMAIDILGTIAARLKRDAVICSREKFWVLQDLLSENAAP-HYPKDTCCICLGGRIENLFICSGCNRLFHADCLDIKENEVPNRNWYCHMCICSKQLLVLQSYCNSQ 341          
BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MZP1|A0A2Z6MZP1_TRISU (Sister chromatid cohesion protein OS=Trifolium subterraneum OX=3900 GN=TSUD_275740 PE=3 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 6.510e-94
Identity = 153/217 (70.51%), Postives = 171/217 (78.80%), Query Frame = 0
Query:   53 IHCSANLPDSLRQASSSNSVLEIP--------------------------RLASVKTQDASELKSTMENLVTDLLTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVARLKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQLAAEGIICRTE 243
            IHCSANLPD+LRQASS NSVLE+                           RLASVKTQDASELKS MENLVTDLLTTLNLPEYPASASILEVLCAILI N G++SKDFA+RSMAIDILGTI ARLK DA+ICS+EKFWVLQDLL ++ AP++YPKDTCC+CLGGR ENLF CSGCNRLFH +CLDI+E+EV N+NWYCHMCICSKQL      C ++
Sbjct:  452 IHCSANLPDTLRQASSGNSVLEVSVDASYPTKCREAVREACCLFWSRVLQRLASVKTQDASELKSVMENLVTDLLTTLNLPEYPASASILEVLCAILINNAGSNSKDFAARSMAIDILGTIAARLKRDAVICSREKFWVLQDLLGENAAPRHYPKDTCCICLGGRIENLFICSGCNRLFHADCLDIKENEVPNRNWYCHMCICSKQLLVLQSYCNSQ 668          
BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. UniProtKB/TrEMBL
Match: tr|G7KMP7|G7KMP7_MEDTR (Sister chromatid cohesion protein OS=Medicago truncatula OX=3880 GN=11413944 PE=3 SV=2)

HSP 1 Score: 310.457 bits (794), Expect = 2.409e-93
Identity = 154/217 (70.97%), Postives = 170/217 (78.34%), Query Frame = 0
Query:   53 IHCSANLPDSLRQASSSNSVLEIP--------------------------RLASVKTQDASELKSTMENLVTDLLTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVARLKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQLAAEGIICRTE 243
            IHCSANLPD+LRQASS NSVLE+                           RLASVKTQDASELKS MENLV DLL TLNLPEYPASASILEVLCAIL+QN G++SKDFASRSMAIDILGTI ARLK DA+ICSQEKFWVLQDLLS+D APQ+YPKDTCCVCLGGR ENLF CSGC+RLFH +CLD++E+EV N+NWYC MCICSKQL      C ++
Sbjct:  506 IHCSANLPDNLRQASSGNSVLEVSFDASYPTKCRDAVTEACCLFWRSVLERLASVKTQDASELKSIMENLVMDLLNTLNLPEYPASASILEVLCAILLQNAGSNSKDFASRSMAIDILGTIAARLKRDAVICSQEKFWVLQDLLSEDAAPQHYPKDTCCVCLGGRVENLFKCSGCDRLFHADCLDVKENEVPNRNWYCLMCICSKQLLVLQSYCNSQ 722          
BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NYE9|A0A2K3NYE9_TRIPR (Nipped-B-like protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g004577 PE=4 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 3.841e-92
Identity = 150/217 (69.12%), Postives = 169/217 (77.88%), Query Frame = 0
Query:   53 IHCSANLPDSLRQASSSNSVLE--------------------------IPRLASVKTQDASELKSTMENLVTDLLTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVARLKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQLAAEGIICRTE 243
            IHCSANLPD+LR ASS NSVLE                          I R+A+ KTQDASELKS MENLVTDLLTTLNLPEYPASASILEVLCAILI N G++SKDFA+RSMAIDILGTI ARLK DA+ICS+EKFWVLQDLLS++ AP +YPKDTCC+CLGGR ENLF CSGCNRLFH +CLDI+E+EV N+NWYCH+CICSKQL      C ++
Sbjct:  506 IHCSANLPDTLRLASSGNSVLEVSVDVSYPTKCRDAVREACGLFWSRVIHRVANAKTQDASELKSIMENLVTDLLTTLNLPEYPASASILEVLCAILINNAGSNSKDFAARSMAIDILGTIAARLKRDAVICSREKFWVLQDLLSENAAPPHYPKDTCCICLGGRIENLFICSGCNRLFHADCLDIKENEVPNRNWYCHICICSKQLLVLQSYCNSQ 722          
BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3DZ31|A0A1S3DZ31_CICAR (Sister chromatid cohesion protein OS=Cicer arietinum OX=3827 GN=LOC101507646 PE=3 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 1.735e-87
Identity = 145/217 (66.82%), Postives = 162/217 (74.65%), Query Frame = 0
Query:   53 IHCSANLPDSLRQASSSNSVLEI--------------------------PRLASVKTQDASELKSTMENLVTDLLTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVARLKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQLAAEGIICRTE 243
            IHCSANLPD+LR+ASS NSVLE+                           RL S KTQD SELKS MENLVTDLLTTLNLPEYPASASILEVLC +LIQN GT+SKD  +RSMAIDILGTI ARLK DAMICS+EKFW+L+DLLS+D A ++YPKDTCCVC GGR ENL  C GCNR FH +CLDI+EDEV N+NWYCHMCICSKQL      C ++
Sbjct:  391 IHCSANLPDTLREASSGNSVLEVLVDASYPTKCREAVTEACCLFWGRVLQRLTSAKTQDTSELKSIMENLVTDLLTTLNLPEYPASASILEVLCVLLIQNAGTNSKDITARSMAIDILGTIAARLKRDAMICSREKFWILRDLLSQDAATRHYPKDTCCVCSGGRVENLVICPGCNRPFHADCLDIKEDEVPNRNWYCHMCICSKQLLVLQSYCNSQ 607          
BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XHJ3|A0A1S2XHJ3_CICAR (Sister chromatid cohesion protein OS=Cicer arietinum OX=3827 GN=LOC101507646 PE=3 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 2.100e-87
Identity = 145/217 (66.82%), Postives = 162/217 (74.65%), Query Frame = 0
Query:   53 IHCSANLPDSLRQASSSNSVLEI--------------------------PRLASVKTQDASELKSTMENLVTDLLTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVARLKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQLAAEGIICRTE 243
            IHCSANLPD+LR+ASS NSVLE+                           RL S KTQD SELKS MENLVTDLLTTLNLPEYPASASILEVLC +LIQN GT+SKD  +RSMAIDILGTI ARLK DAMICS+EKFW+L+DLLS+D A ++YPKDTCCVC GGR ENL  C GCNR FH +CLDI+EDEV N+NWYCHMCICSKQL      C ++
Sbjct:  505 IHCSANLPDTLREASSGNSVLEVLVDASYPTKCREAVTEACCLFWGRVLQRLTSAKTQDTSELKSIMENLVTDLLTTLNLPEYPASASILEVLCVLLIQNAGTNSKDITARSMAIDILGTIAARLKRDAMICSREKFWILRDLLSQDAATRHYPKDTCCVCSGGRVENLVICPGCNRPFHADCLDIKEDEVPNRNWYCHMCICSKQLLVLQSYCNSQ 721          
BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1J7HI86|A0A1J7HI86_LUPAN (Sister chromatid cohesion protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_32464 PE=3 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.404e-83
Identity = 139/217 (64.06%), Postives = 156/217 (71.89%), Query Frame = 0
Query:   53 IHCSANLPDSLRQASSSNSVLEIP--------------------------RLASVKTQDASELKSTMENLVTDLLTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVARLKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQLAAEGIICRTE 243
            IHCSANLPD+LRQASS N+VLE+                           R ASVKT DASELKS MENLVTDLLTTLNLPEYPAS  ILEVLC +L+QN G  SKD ++R MAIDILGTI ARLK DA+ICSQEKFW+LQDL S+D A Q+YPKDTCCVCLGGR ENLF C GC RLFH  CL I+E EV ++NWYC +C CSKQL   G  C ++
Sbjct:  487 IHCSANLPDALRQASSGNAVLEVSVDGSYSTKCHEALTDACCLFWSRVLQRFASVKTHDASELKSIMENLVTDLLTTLNLPEYPASVPILEVLCVLLLQNAGPKSKDVSARCMAIDILGTIAARLKRDALICSQEKFWILQDLHSQDTATQHYPKDTCCVCLGGRLENLFMCHGCQRLFHANCLGIKEHEVSSRNWYCQICTCSKQLLVLGSYCNSQ 703          
BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371FA91|A0A371FA91_MUCPR (Sister chromatid cohesion protein (Fragment) OS=Mucuna pruriens OX=157652 GN=SCC2 PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.928e-82
Identity = 136/207 (65.70%), Postives = 155/207 (74.88%), Query Frame = 0
Query:   53 IHCSANLPDSLRQASSSNSVLE--------------------------IPRLASVKTQDASELKSTMENLVTDLLTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVARLKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQL 233
            IHCSANLPD+LR+AS+ N+VLE                          + R ASVKTQDASELKS +ENLVTDLLTTLNLPEYPASA ILEVLC +L+QN G  SKD ++RSMAIDILGTI ARLK DA++CSQEKFW+LQDLLS+D A Q+YPKDTCCVCLGGR ENLF C GC RLFH +CL I+E EV ++NW C  CIC KQL
Sbjct:  505 IHCSANLPDALRKASNGNAVLEASVDASYPIKCHEAATEACCLFWSRVLQRFASVKTQDASELKSIIENLVTDLLTTLNLPEYPASAPILEVLCVLLLQNAGPKSKDVSARSMAIDILGTIAARLKRDALVCSQEKFWILQDLLSQDAATQHYPKDTCCVCLGGRVENLFICHGCQRLFHADCLGIKEHEVSSRNWSCQTCICHKQL 711          
BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A5N8J1|A0A6A5N8J1_LUPAL (Sister chromatid cohesion protein OS=Lupinus albus OX=3870 GN=Lal_00005918 PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.731e-81
Identity = 137/207 (66.18%), Postives = 153/207 (73.91%), Query Frame = 0
Query:   53 IHCSANLPDSLRQASSSNSVLEIP--------------------------RLASVKTQDASELKSTMENLVTDLLTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVARLKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQL 233
            IHCSANLPD+LRQASS N+VLE+                           RLASVKT DASELKS MENLVTDLLTTLNLPEYPAS  ILEVLC +L+QN G  SKD ++R MAIDILGTI ARLK DA+ICSQEKFW+LQDLLS+D + Q+ PKDTCCVCLGGR ENLF C GC RLFH  CL I+E EV ++NWYC +CI SKQL
Sbjct:  487 IHCSANLPDALRQASSGNAVLEVSVDGSYATKCHEALTDACCLFWSRVLQRLASVKTHDASELKSIMENLVTDLLTTLNLPEYPASVPILEVLCVLLLQNAGPKSKDVSARCMAIDILGTIAARLKRDALICSQEKFWILQDLLSQDTSKQHCPKDTCCVCLGGRVENLFMCHGCQRLFHANCLGIKEHEVSSRNWYCQICISSKQL 693          
BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4QFI2|A0A6A4QFI2_LUPAL (Sister chromatid cohesion protein OS=Lupinus albus OX=3870 GN=Lalb_Chr06g0175001 PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.785e-81
Identity = 137/207 (66.18%), Postives = 153/207 (73.91%), Query Frame = 0
Query:   53 IHCSANLPDSLRQASSSNSVLEIP--------------------------RLASVKTQDASELKSTMENLVTDLLTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVARLKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQL 233
            IHCSANLPD+LRQASS N+VLE+                           RLASVKT DASELKS MENLVTDLLTTLNLPEYPAS  ILEVLC +L+QN G  SKD ++R MAIDILGTI ARLK DA+ICSQEKFW+LQDLLS+D + Q+ PKDTCCVCLGGR ENLF C GC RLFH  CL I+E EV ++NWYC +CI SKQL
Sbjct:  505 IHCSANLPDALRQASSGNAVLEVSVDGSYATKCHEALTDACCLFWSRVLQRLASVKTHDASELKSIMENLVTDLLTTLNLPEYPASVPILEVLCVLLLQNAGPKSKDVSARCMAIDILGTIAARLKRDALICSQEKFWILQDLLSQDTSKQHCPKDTCCVCLGGRVENLFMCHGCQRLFHANCLGIKEHEVSSRNWYCQICISSKQL 711          
BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. UniProtKB/Swiss-Prot
Match: sp|A5HEI1|SCC2_ARATH (Sister chromatid cohesion protein SCC2 OS=Arabidopsis thaliana OX=3702 GN=SCC2 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.423e-53
Identity = 106/262 (40.46%), Postives = 149/262 (56.87%), Query Frame = 0
Query:   17 RNFIIWAITTALASDSAQRKYLRAKTDPDD---------YCFTYSIHCSANLPDSLRQASSSNSVLE--------------------------IPRLASVKTQDASELKSTMENLVTDLLTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVARLKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQLAAEGIICRTE 243
            R ++I  I+  L    + ++ LRA   PD+               +H S +LP++ RQA+S NS+LE                          + R  S K QDASE+K  +ENLV DLLT LNLPEYP+ + ILEVLC IL+ N G  SKD ++R MAI++LGTI ARLK DA++CS+++FW L +  S+    Q   KD C  CLG RA NL  C  C R FH +CL ++E ++ ++NW+C +C+C +QL      C+T+
Sbjct:  501 RTYVIDEISQLLWKLPSSKRALRAYLLPDEEQRQIQMVTALLIQLVHNSTSLPETSRQAASGNSILETSVDVGYLTKCHEAATETCCLFWTRVLERFTSFKGQDASEIKLIIENLVMDLLTALNLPEYPSVSPILEVLCVILLHNAGLKSKDVSARIMAIELLGTIAARLKRDAVLCSKDRFWTLLESDSEISVDQVCTKD-CTFCLGKRAGNLLVCQICQRRFHGDCLGLKELDISSRNWHCPLCVCKRQLLVLQSYCKTD 761          
BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. Araport11
Match: AT5G15540.1 (| PHD finger family protein | Chr5:5047887-5057411 REVERSE LENGTH=1846 | 201606)

HSP 1 Score: 189.119 bits (479), Expect = 1.456e-54
Identity = 106/262 (40.46%), Postives = 149/262 (56.87%), Query Frame = 0
Query:   17 RNFIIWAITTALASDSAQRKYLRAKTDPDD---------YCFTYSIHCSANLPDSLRQASSSNSVLE--------------------------IPRLASVKTQDASELKSTMENLVTDLLTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVARLKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQLAAEGIICRTE 243
            R ++I  I+  L    + ++ LRA   PD+               +H S +LP++ RQA+S NS+LE                          + R  S K QDASE+K  +ENLV DLLT LNLPEYP+ + ILEVLC IL+ N G  SKD ++R MAI++LGTI ARLK DA++CS+++FW L +  S+    Q   KD C  CLG RA NL  C  C R FH +CL ++E ++ ++NW+C +C+C +QL      C+T+
Sbjct:  501 RTYVIDEISQLLWKLPSSKRALRAYLLPDEEQRQIQMVTALLIQLVHNSTSLPETSRQAASGNSILETSVDVGYLTKCHEAATETCCLFWTRVLERFTSFKGQDASEIKLIIENLVMDLLTALNLPEYPSVSPILEVLCVILLHNAGLKSKDVSARIMAIELLGTIAARLKRDAVLCSKDRFWTLLESDSEISVDQVCTKD-CTFCLGKRAGNLLVCQICQRRFHGDCLGLKELDISSRNWHCPLCVCKRQLLVLQSYCKTD 761          
BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. Araport11
Match: AT5G15540.2 (| PHD finger family protein | Chr5:5047887-5057411 REVERSE LENGTH=1844 | 201606)

HSP 1 Score: 189.119 bits (479), Expect = 1.498e-54
Identity = 106/262 (40.46%), Postives = 149/262 (56.87%), Query Frame = 0
Query:   17 RNFIIWAITTALASDSAQRKYLRAKTDPDD---------YCFTYSIHCSANLPDSLRQASSSNSVLE--------------------------IPRLASVKTQDASELKSTMENLVTDLLTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVARLKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQLAAEGIICRTE 243
            R ++I  I+  L    + ++ LRA   PD+               +H S +LP++ RQA+S NS+LE                          + R  S K QDASE+K  +ENLV DLLT LNLPEYP+ + ILEVLC IL+ N G  SKD ++R MAI++LGTI ARLK DA++CS+++FW L +  S+    Q   KD C  CLG RA NL  C  C R FH +CL ++E ++ ++NW+C +C+C +QL      C+T+
Sbjct:  499 RTYVIDEISQLLWKLPSSKRALRAYLLPDEEQRQIQMVTALLIQLVHNSTSLPETSRQAASGNSILETSVDVGYLTKCHEAATETCCLFWTRVLERFTSFKGQDASEIKLIIENLVMDLLTALNLPEYPSVSPILEVLCVILLHNAGLKSKDVSARIMAIELLGTIAARLKRDAVLCSKDRFWTLLESDSEISVDQVCTKD-CTFCLGKRAGNLLVCQICQRRFHGDCLGLKELDISSRNWHCPLCVCKRQLLVLQSYCKTD 759          
The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A392LYM3|A0A392LYM3_9FABA9.235e-9670.51Sister chromatid cohesion protein (Fragment) OS=Tr... [more]
tr|A0A2Z6MZP1|A0A2Z6MZP1_TRISU6.510e-9470.51Sister chromatid cohesion protein OS=Trifolium sub... [more]
tr|G7KMP7|G7KMP7_MEDTR2.409e-9370.97Sister chromatid cohesion protein OS=Medicago trun... [more]
tr|A0A2K3NYE9|A0A2K3NYE9_TRIPR3.841e-9269.12Nipped-B-like protein (Fragment) OS=Trifolium prat... [more]
tr|A0A1S3DZ31|A0A1S3DZ31_CICAR1.735e-8766.82Sister chromatid cohesion protein OS=Cicer arietin... [more]
tr|A0A1S2XHJ3|A0A1S2XHJ3_CICAR2.100e-8766.82Sister chromatid cohesion protein OS=Cicer arietin... [more]
tr|A0A1J7HI86|A0A1J7HI86_LUPAN1.404e-8364.06Sister chromatid cohesion protein OS=Lupinus angus... [more]
tr|A0A371FA91|A0A371FA91_MUCPR2.928e-8265.70Sister chromatid cohesion protein (Fragment) OS=Mu... [more]
tr|A0A6A5N8J1|A0A6A5N8J1_LUPAL1.731e-8166.18Sister chromatid cohesion protein OS=Lupinus albus... [more]
tr|A0A6A4QFI2|A0A6A4QFI2_LUPAL1.785e-8166.18Sister chromatid cohesion protein OS=Lupinus albus... [more]
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BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
sp|A5HEI1|SCC2_ARATH1.423e-5340.46Sister chromatid cohesion protein SCC2 OS=Arabidop... [more]
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BLAST of Vfaba.Tiffany.R1.2g113200.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G15540.11.456e-5440.46| PHD finger family protein | Chr5:5047887-5057411... [more]
AT5G15540.21.498e-5440.46| PHD finger family protein | Chr5:5047887-5057411... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 184..229
e-value: 3.8E-7
score: 29.9
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 181..230
score: 8.9916
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 168..239
e-value: 1.3E-10
score: 42.8
IPR033031Scc2/Nipped-B familyPANTHERPTHR21704NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATEDcoord: 76..173
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 179..236

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Tiffany.R1.2g113200.1_tif_v1 ID=Vfaba.Tiffany.R1.2g113200.1_tif_v1; Name=Vfaba.Tiffany.R1.2g113200.1; organism=Vicia faba; type=mRNA; length=735bp
ATGAGCGCACCTCCTATTTCCATTTTCTTAATGGATCAGGAAAGGCTTCG
TAATTTTATCATTTGGGCAATTACAACTGCGTTAGCGTCGGATTCTGCAC
AAAGAAAATACCTCAGAGCAAAGACAGATCCAGATGATTACTGCTTTACT
TATTCAATTCATTGTAGTGCTAACCTTCCTGATTCTTTAAGACAAGCATC
GAGTAGTAATTCTGTATTGGAAATCCCGCGACTTGCAAGTGTAAAGACTC
AGGATGCTTCTGAATTGAAATCCACAATGGAGAATCTTGTTACTGATTTA
TTGACCACTCTAAATTTACCTGAATATCCTGCTTCAGCTTCTATTCTAGA
GGTTCTATGTGCCATACTAATTCAGAATGATGGGACAAGTTCCAAGGATT
TTGCTTCACGTTCCATGGCAATTGATATTCTTGGCACTATTGTGGCAAGG
TTGAAGCATGATGCTATGATTTGTAGCCAGGAAAAGTTTTGGGTACTTCA
AGATTTACTTAGTAAGGATGTTGCTCCTCAGAATTATCCGAAAGATACAT
GTTGTGTCTGTTTGGGTGGAAGGGCTGAAAATTTGTTCCCATGTTCCGGT
TGCAATAGGCTTTTTCATACTGAATGCCTGGACATTGAAGAAGATGAAGT
TCTCAATCAGAACTGGTACTGTCACATGTGCATCTGCTCAAAGCAACTGG
CTGCTGAAGGAATCATTTGTAGGACAGAAGCTTGA
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protein sequence of Vfaba.Tiffany.R1.2g113200.1_tif_v1

>Vfaba.Tiffany.R1.2g113200.1_tif_v1 ID=Vfaba.Tiffany.R1.2g113200.1_tif_v1; Name=Vfaba.Tiffany.R1.2g113200.1_tif_v1; organism=Vicia faba; type=polypeptide; length=244bp
MSAPPISIFLMDQERLRNFIIWAITTALASDSAQRKYLRAKTDPDDYCFT
YSIHCSANLPDSLRQASSSNSVLEIPRLASVKTQDASELKSTMENLVTDL
LTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVAR
LKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSG
CNRLFHTECLDIEEDEVLNQNWYCHMCICSKQLAAEGIICRTEA
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mRNA from alignment at chr2:863876652..863877671-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Tiffany.R1.2g113200.1_tif_v1 ID=Vfaba.Tiffany.R1.2g113200.1_tif_v1; Name=Vfaba.Tiffany.R1.2g113200.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:863876652..863877671- (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR033031Scc2/Nipped-B
IPR011011Znf_FYVE_PHD
Vocabulary: Biological Process
TermDefinition
GO:0010468regulation of gene expression
GO:0061780mitotic cohesin loading
Vocabulary: Molecular Function
TermDefinition
GO:0003682chromatin binding