Vfaba.Tiffany.R1.2g134760.1

Transcript Overview
NameVfaba.Tiffany.R1.2g134760.1
Unique NameVfaba.Tiffany.R1.2g134760.1_tif_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length597
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr2chromosomechr2:1055517232..1055517828 -Vicia faba cv. Tiffany genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
tifzwsR196Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifzwsR212Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifzwsR223Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
astifL035Vigna angularis Jingnong 6 genome v1.1Vigna angularis
astifL205Vigna angularis Jingnong 6 genome v1.1Vigna angularis
astifL208Vigna angularis Jingnong 6 genome v1.1Vigna angularis
astifL714Vigna angularis Jingnong 6 genome v1.1Vigna angularis
astifL768Vigna angularis Jingnong 6 genome v1.1Vigna angularis
catifL285Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL394Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL400Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL491Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL610Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL680Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crtifL055Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crtifL059Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crtifL324Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvtifL013Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tiftifR146Vicia faba cv. Tiffany genome v1.0Vicia faba
tiftifR153Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifL358Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pstifL488Pisum sativum Cameor genome v1aPisum sativum
pvtifL789Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvtifL827Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvfhR144Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuR253Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvuR255Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvuR288Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvfhR164Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuR324Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvuR332Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caitifL533Cicer arietinum ICC 4958 genome v2Cicer arietinum
antifL0329Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caitifL550Cicer arietinum ICC 4958 genome v2Cicer arietinum
antifL0373Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0523Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0734Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0737Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
tifvuaR220Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvuaR259Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvssR234Vicia sativa cv. Studenica genome v1.0Vicia sativa
tifvuaR273Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvuaR294Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvssR269Vicia sativa cv. Studenica genome v1.0Vicia sativa
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g134760Vfaba.Tiffany.R1.2g134760_tif_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g134760.1_tif_v1-exonVfaba.Tiffany.R1.2g134760.1_tif_v1-exon-chr2_tif_v1:1055517232..1055517828Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g134760.1_tif_v1-cdsVfaba.Tiffany.R1.2g134760.1_tif_v1-cds-chr2_tif_v1:1055517232..1055517828Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g134760.1_tif_v1Vfaba.Tiffany.R1.2g134760.1_tif_v1Vicia fabapolypeptide
Vfaba.Tiffany.R1.2g134760.1_tif_v1Vfaba.Tiffany.R1.2g134760.1_tif_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NGI6|A0A2Z6NGI6_TRISU (Uncharacterized protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_155510 PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.931e-92
Identity = 134/176 (76.14%), Postives = 153/176 (86.93%), Query Frame = 0
Query:    6 KIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESKPFAPMLVS 181
            KIEHKLTLPP LLALPI EAI +ELERLFLDKVIA LGLC+SVYDIIS++GGS+FP DGAPTYL VFNLIMFRPF GEIIT KL+ SDADGLRLS+ FFDDIYIP HH+PNP+ YEP  +N  KGTW+WD+GEE   +F I+ + +IKF VQSVSYPPIPVEQPK+SKPFAPM+V+
Sbjct:    1 KIEHKLTLPPYLLALPIREAILSELERLFLDKVIAKLGLCISVYDIISIKGGSVFPSDGAPTYLAVFNLIMFRPFNGEIITAKLIGSDADGLRLSVGFFDDIYIPKHHMPNPSHYEPATTNSKKGTWYWDFGEE---AFPIDDSVEIKFAVQSVSYPPIPVEQPKDSKPFAPMVVN 173          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151SJW3|A0A151SJW3_CAJCA (DNA-directed RNA polymerase III subunit rpc8 OS=Cajanus cajan OX=3821 GN=KK1_001235 PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 4.077e-89
Identity = 132/181 (72.93%), Postives = 150/181 (82.87%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESKPFAPMLVS 181
            MFYLS+IEHKL+LPP+ L LPI EAIH ELE+LFLDKVIANLGLC+SVYDI S++GG IF GDGAPT+ VVFNLIMFRPF GEIIT KL SSDADGLRL++ FFDDIY+P HH+P PN +  E  N  KG WFWD+    D S+ I  TD IKF+VQ+VSYPPIPVEQPKESKPFAPMLV+
Sbjct:    1 MFYLSRIEHKLSLPPTRLVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIFAGDGAPTFTVVFNLIMFRPFVGEIITAKLFSSDADGLRLTLGFFDDIYVPAHHLPYPNHFVAEQVNSKKGVWFWDFN---DQSYPIEDTDVIKFRVQNVSYPPIPVEQPKESKPFAPMLVT 178          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P5N8B5|A0A6P5N8B5_ARADU (DNA-directed RNA polymerase III subunit RPC8 isoform X2 OS=Arachis duranensis OX=130453 GN=LOC107475699 PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.858e-87
Identity = 128/181 (70.72%), Postives = 152/181 (83.98%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESKPFAPMLVS 181
            MFYLSKIEH L LP   L+ PI EAIHTELE+LFLDKVIANLGLCVSVYDI S+EGG I+PGDGAPTY VVFNLIMFRPF GEI+T KL+SSDADGLRLS+ FFDDIY+P  H+P+PN ++ E+ N  KGTW+W Y E+   S+ ++ +D IKF++Q+V+YP IPVEQPKESKPFAPMLV+
Sbjct:   30 MFYLSKIEHTLPLPAPQLSRPIREAIHTELEKLFLDKVIANLGLCVSVYDIKSIEGGFIYPGDGAPTYTVVFNLIMFRPFVGEIMTAKLLSSDADGLRLSLGFFDDIYVPLQHLPSPNEFKAESKNSTKGTWYWKYEEQ---SYPVDDSDMIKFRIQNVTYPSIPVEQPKESKPFAPMLVT 207          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4CG12|A0A6P4CG12_ARADU (DNA-directed RNA polymerase III subunit RPC8 isoform X4 OS=Arachis duranensis OX=130453 GN=LOC107475699 PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.465e-86
Identity = 128/181 (70.72%), Postives = 152/181 (83.98%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESKPFAPMLVS 181
            MFYLSKIEH L LP   L+ PI EAIHTELE+LFLDKVIANLGLCVSVYDI S+EGG I+PGDGAPTY VVFNLIMFRPF GEI+T KL+SSDADGLRLS+ FFDDIY+P  H+P+PN ++ E+ N  KGTW+W Y E+   S+ ++ +D IKF++Q+V+YP IPVEQPKESKPFAPMLV+
Sbjct:    1 MFYLSKIEHTLPLPAPQLSRPIREAIHTELEKLFLDKVIANLGLCVSVYDIKSIEGGFIYPGDGAPTYTVVFNLIMFRPFVGEIMTAKLLSSDADGLRLSLGFFDDIYVPLQHLPSPNEFKAESKNSTKGTWYWKYEEQ---SYPVDDSDMIKFRIQNVTYPSIPVEQPKESKPFAPMLVT 178          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4CHF4|A0A6P4CHF4_ARADU (DNA-directed RNA polymerase III subunit RPC8 isoform X3 OS=Arachis duranensis OX=130453 GN=LOC107475699 PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.780e-86
Identity = 128/181 (70.72%), Postives = 152/181 (83.98%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESKPFAPMLVS 181
            MFYLSKIEH L LP   L+ PI EAIHTELE+LFLDKVIANLGLCVSVYDI S+EGG I+PGDGAPTY VVFNLIMFRPF GEI+T KL+SSDADGLRLS+ FFDDIY+P  H+P+PN ++ E+ N  KGTW+W Y E+   S+ ++ +D IKF++Q+V+YP IPVEQPKESKPFAPMLV+
Sbjct:   12 MFYLSKIEHTLPLPAPQLSRPIREAIHTELEKLFLDKVIANLGLCVSVYDIKSIEGGFIYPGDGAPTYTVVFNLIMFRPFVGEIMTAKLLSSDADGLRLSLGFFDDIYVPLQHLPSPNEFKAESKNSTKGTWYWKYEEQ---SYPVDDSDMIKFRIQNVTYPSIPVEQPKESKPFAPMLVT 189          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P5N663|A0A6P5N663_ARADU (DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Arachis duranensis OX=130453 GN=LOC107475699 PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 2.339e-86
Identity = 128/181 (70.72%), Postives = 152/181 (83.98%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESKPFAPMLVS 181
            MFYLSKIEH L LP   L+ PI EAIHTELE+LFLDKVIANLGLCVSVYDI S+EGG I+PGDGAPTY VVFNLIMFRPF GEI+T KL+SSDADGLRLS+ FFDDIY+P  H+P+PN ++ E+ N  KGTW+W Y E+   S+ ++ +D IKF++Q+V+YP IPVEQPKESKPFAPMLV+
Sbjct:   30 MFYLSKIEHTLPLPAPQLSRPIREAIHTELEKLFLDKVIANLGLCVSVYDIKSIEGGFIYPGDGAPTYTVVFNLIMFRPFVGEIMTAKLLSSDADGLRLSLGFFDDIYVPLQHLPSPNEFKAESKNSTKGTWYWKYEEQ---SYPVDDSDMIKFRIQNVTYPSIPVEQPKESKPFAPMLVT 207          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7XJ48|A0A3Q7XJ48_CICAR (DNA-directed RNA polymerase III subunit RPC8-like OS=Cicer arietinum OX=3827 GN=LOC101506945 PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 6.672e-85
Identity = 140/181 (77.35%), Postives = 155/181 (85.64%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKG-TWFWDYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESKPFAPMLV 180
            MFYLS+IEHKL LPPSLL+LPI +AIHTELE+LFLDKVIANLGLC  VYDIIS+EGG IFPGDGAPTY VVFNLIMFRP  GEIIT KL SSDADGLRLS+ FFDDIYIPTHH+PNP+ ++P     NK   WFWDY +E   S+ I+ +D+IKFQVQSVSYPPIPVEQPKESKPFAPMLV
Sbjct:    1 MFYLSRIEHKLRLPPSLLSLPIRDAIHTELEKLFLDKVIANLGLCTCVYDIISIEGGFIFPGDGAPTYTVVFNLIMFRPIMGEIITAKLHSSDADGLRLSLGFFDDIYIPTHHMPNPSHFDPIPGKSNKSVVWFWDYKKEEGLSYPIDSSDEIKFQVQSVSYPPIPVEQPKESKPFAPMLV 181          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/TrEMBL
Match: tr|G7L7Y4|G7L7Y4_MEDTR (DNA-directed RNA polymerase III protein OS=Medicago truncatula OX=3880 GN=11417037 PE=3 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 1.614e-84
Identity = 128/181 (70.72%), Postives = 149/181 (82.32%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESKPFAPMLVS 181
            MFYLSKIEHK  LPP LLA PI EAI +ELERLFLDKVI  LGLC+SVYDI S+EGGSIFPG GAPTY VVFNLIMFRPFPGEII+ K++S DADG+RLS+ FF+DIYIPTHH+P P+ Y  +N+ +    W W+YGEE D  FNI  +++I+FQV SVSYP IPVEQ KESKPFAPM+V+
Sbjct:    1 MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDKVIQKLGLCISVYDITSIEGGSIFPGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFEDIYIPTHHMPYPSYYISKNNTRK---WTWEYGEETD-EFNIEISNEIRFQVLSVSYPTIPVEQAKESKPFAPMVVN 177          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/TrEMBL
Match: tr|V7AKM7|V7AKM7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G020200g PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.478e-83
Identity = 128/194 (65.98%), Postives = 150/194 (77.32%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNK-------------NKGTWFWDYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESKPFAPMLVS 181
            MFYLSKIEHKL LPPS L LPI EAIH ELE+LFLDKVIAN+GLC+SVYDI S++GG IFPGDGAPTY VVFNLIMFRPF GEIIT +L+SSD+DGLRL++ FF+DIY+P HH+P PN +  +   K              KG W+WD+ E+    + I  TD IKF+VQ+VSYP IPVEQPKESKPFAPMLV+
Sbjct:    1 MFYLSKIEHKLPLPPSRLVLPIREAIHMELEKLFLDKVIANVGLCISVYDIRSIDGGFIFPGDGAPTYTVVFNLIMFRPFVGEIITARLISSDSDGLRLTLGFFEDIYVPAHHMPYPNHFVEDEQGKRVSSSEESTTNSVRKGVWYWDFNEQ---EYPIQETDVIKFRVQNVSYPQIPVEQPKESKPFAPMLVT 191          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Z517|A0A1S2Z517_CICAR (DNA-directed RNA polymerase III subunit RPC8-like OS=Cicer arietinum OX=3827 GN=LOC101505320 PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 7.147e-83
Identity = 137/181 (75.69%), Postives = 153/181 (84.53%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKG-TWFWDYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESKPFAPMLV 180
            MFYLS+IEHKL LPPSLL+LPI +AIH ELE+LFLDKVIANLGLC  VYDIIS+EGG IF GDGAPTY VVFNLIMFRP  GEIIT KL SSDADGLRLS+ FFDDIYIPTHH+PNP+ ++P     NK   WFWD+ +E   S+ I+ +D+IKFQVQSVSYPPIPVEQPKESKPFAPMLV
Sbjct:    1 MFYLSRIEHKLRLPPSLLSLPIRDAIHMELEKLFLDKVIANLGLCTCVYDIISIEGGFIFAGDGAPTYTVVFNLIMFRPIMGEIITAKLHSSDADGLRLSLGFFDDIYIPTHHMPNPSHFDPMPGKSNKSVVWFWDFKKEEGLSYPIDSSDEIKFQVQSVSYPPIPVEQPKESKPFAPMLV 181          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/Swiss-Prot
Match: sp|P35718|RPC8_YEAST (DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC25 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.233e-30
Identity = 61/174 (35.06%), Postives = 100/174 (57.47%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLS-IEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESK 173
            MF LSKI   + +PP         AI  +L   F +K+I N+GLC+++YD++++E G + PGDG+    V F  ++F+PF GEI+TG +    A+G+++S +  FDDI+IP + +     Y PE S      W W   EE    F++N  +KI+F+++   +  +  + PKE +
Sbjct:    1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEES-----AWIWPMDEETKLYFDVN--EKIRFRIEREVFVDVKPKSPKERE 167          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/Swiss-Prot
Match: sp|O94285|RPC8_SCHPO (DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc25 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.379e-29
Identity = 64/178 (35.96%), Postives = 101/178 (56.74%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFW-----DYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESK 173
            MF LS+    +++ PS    P  EA+  E+ + + +KVI N+GL + VYD + +  G I  GDG+    VVF LI+FRPF GE++ GK+ S   +G+R++I FFDDI+IP   + +P  + P+        W W     D  E  +  F+I+  ++I+FQ++S  +  I    PK +K
Sbjct:    1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVFRPDER-----AWVWKIEGEDGSEGTELYFDID--EEIRFQIESEDFVDI---SPKRNK 168          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9Y535|RPC8_HUMAN (DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens OX=9606 GN=POLR3H PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.781e-25
Identity = 51/162 (31.48%), Postives = 89/162 (54.94%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDY-GEEIDSSFNINYTDKIKFQVQSVSY 161
            MF L ++   + +PP      + ++I  EL +   +KV+ N+GLC+ ++DI  +E   +FPGDGA    V F  ++F PF  EI+ GK+     +G+ +S+ FFDDI IP   +  P ++     ++ +  W W+Y  EE      ++  ++I+F+V   S+
Sbjct:    1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF-----DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESF 157          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q557J3|RPC8_DICDI (DNA-directed RNA polymerase III subunit rpc8 OS=Dictyostelium discoideum OX=44689 GN=polr3h-1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.751e-25
Identity = 56/193 (29.02%), Postives = 100/193 (51.81%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESKPFAPMLVSDK---RNFRRKQ 190
            MF+L  IE K+ + PS     + + I  E+E+ +  KV+ N GL V++YDI+      +  GDG    +V F +++F+PF GE++ G +  S    +++S+ FF +IY+    +PNP+ Y     N+ +G W+W++ E   +        +++F++  V + P  + QP  S         D    R ++ KQ
Sbjct:    1 MFHLITIEDKVRIAPSQFNNEV-QTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSNY-----NQEEGLWYWEWNE---NQLFFEDGGRVRFKIDQVEFNP-EISQPAPSPKNVNTEAMDSYSLREYKEKQ 183          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9D2C6|RPC8_MOUSE (DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus OX=10090 GN=Polr3h PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.523e-25
Identity = 51/162 (31.48%), Postives = 89/162 (54.94%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDY-GEEIDSSFNINYTDKIKFQVQSVSY 161
            MF L ++   + +PP      + ++I  EL +   +KV+ N+GLC+ ++DI  +E   +FPGDGA    V F  ++F PF  EI+ GK+     +G+ +S+ FFDDI IP   +  P ++     ++ +  W W+Y  EE      ++  ++I+F+V   S+
Sbjct:    1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF-----DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESF 157          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q2T9X1|RPC8_BOVIN (DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus OX=9913 GN=POLR3H PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.346e-24
Identity = 50/162 (30.86%), Postives = 89/162 (54.94%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDY-GEEIDSSFNINYTDKIKFQVQSVSY 161
            MF L ++   + +PP      + ++I  EL +   +KV+ N+GLC+ ++DI  +E   +FPGDGA    V F  ++F PF  EI+ GK+     +G+ +S+ FFDDI IP   +  P ++     ++ +  W W+Y  EE      ++  ++++F+V   S+
Sbjct:    1 MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF-----DEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESF 157          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. Araport11
Match: AT1G06790.2 (| RNA polymerase Rpb7 N-terminal domain-containing protein | Chr1:2087645-2089039 FORWARD LENGTH=189 | 201606)

HSP 1 Score: 206.838 bits (525), Expect = 4.294e-68
Identity = 95/181 (52.49%), Postives = 135/181 (74.59%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESKPFAPMLVS 181
            MFYLS++EH L +PP LL LP+ +AI + L+ +FLDKV+A+LGLCVS+YDI S+EGG + PGDGA TY V   +++FRPF GE+I  K   SDA+GLRL++ FFDDIY+P   +P PNR EP+  N+ +  W W+YGE     + ++   +IKF+V+S+SYP +P E+ +++KPFAPM+V+
Sbjct:    1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVLPGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRCEPDPYNRKQMIWVWEYGEP-KEDYIVDDACQIKFRVESISYPSVPTERAEDAKPFAPMVVT 180          
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. Araport11
Match: AT1G06790.1 (| RNA polymerase Rpb7 N-terminal domain-containing protein | Chr1:2087645-2089287 FORWARD LENGTH=204 | 201606)

HSP 1 Score: 206.068 bits (523), Expect = 1.545e-67
Identity = 95/181 (52.49%), Postives = 135/181 (74.59%), Query Frame = 0
Query:    1 MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYDIISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLSIEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDYGEEIDSSFNINYTDKIKFQVQSVSYPPIPVEQPKESKPFAPMLVS 181
            MFYLS++EH L +PP LL LP+ +AI + L+ +FLDKV+A+LGLCVS+YDI S+EGG + PGDGA TY V   +++FRPF GE+I  K   SDA+GLRL++ FFDDIY+P   +P PNR EP+  N+ +  W W+YGE     + ++   +IKF+V+S+SYP +P E+ +++KPFAPM+V+
Sbjct:    1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVLPGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRCEPDPYNRKQMIWVWEYGEP-KEDYIVDDACQIKFRVESISYPSVPTERAEDAKPFAPMVVT 180          
The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2Z6NGI6|A0A2Z6NGI6_TRISU1.931e-9276.14Uncharacterized protein (Fragment) OS=Trifolium su... [more]
tr|A0A151SJW3|A0A151SJW3_CAJCA4.077e-8972.93DNA-directed RNA polymerase III subunit rpc8 OS=Ca... [more]
tr|A0A6P5N8B5|A0A6P5N8B5_ARADU3.858e-8770.72DNA-directed RNA polymerase III subunit RPC8 isofo... [more]
tr|A0A6P4CG12|A0A6P4CG12_ARADU1.465e-8670.72DNA-directed RNA polymerase III subunit RPC8 isofo... [more]
tr|A0A6P4CHF4|A0A6P4CHF4_ARADU1.780e-8670.72DNA-directed RNA polymerase III subunit RPC8 isofo... [more]
tr|A0A6P5N663|A0A6P5N663_ARADU2.339e-8670.72DNA-directed RNA polymerase III subunit RPC8 isofo... [more]
tr|A0A3Q7XJ48|A0A3Q7XJ48_CICAR6.672e-8577.35DNA-directed RNA polymerase III subunit RPC8-like ... [more]
tr|G7L7Y4|G7L7Y4_MEDTR1.614e-8470.72DNA-directed RNA polymerase III protein OS=Medicag... [more]
tr|V7AKM7|V7AKM7_PHAVU2.478e-8365.98Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|A0A1S2Z517|A0A1S2Z517_CICAR7.147e-8375.69DNA-directed RNA polymerase III subunit RPC8-like ... [more]
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BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 6
Match NameE-valueIdentityDescription
sp|P35718|RPC8_YEAST3.233e-3035.06DNA-directed RNA polymerase III subunit RPC8 OS=Sa... [more]
sp|O94285|RPC8_SCHPO3.379e-2935.96DNA-directed RNA polymerase III subunit rpc8 OS=Sc... [more]
sp|Q9Y535|RPC8_HUMAN2.781e-2531.48DNA-directed RNA polymerase III subunit RPC8 OS=Ho... [more]
sp|Q557J3|RPC8_DICDI4.751e-2529.02DNA-directed RNA polymerase III subunit rpc8 OS=Di... [more]
sp|Q9D2C6|RPC8_MOUSE6.523e-2531.48DNA-directed RNA polymerase III subunit RPC8 OS=Mu... [more]
sp|Q2T9X1|RPC8_BOVIN1.346e-2430.86DNA-directed RNA polymerase III subunit RPC8 OS=Bo... [more]
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BLAST of Vfaba.Tiffany.R1.2g134760.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G06790.24.294e-6852.49| RNA polymerase Rpb7 N-terminal domain-containing... [more]
AT1G06790.11.545e-6752.49| RNA polymerase Rpb7 N-terminal domain-containing... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 80..192
e-value: 7.8E-22
score: 80.1
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 79..161
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 1..79
e-value: 2.7E-23
score: 84.1
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilySUPERFAMILY88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 1..78
IPR013238RNA polymerase III, subunit Rpc25PFAMPF08292RNA_pol_Rbc25coord: 83..171
e-value: 5.1E-15
score: 55.8
IPR005576RNA polymerase Rpb7-like , N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 8..64
e-value: 1.5E-9
score: 38.0
IPR045113RNA polymerase subunit Rpb7-likePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 1..171
NoneNo IPR availableCDDcd04330RNAP_III_Rpc25_Ncoord: 2..80
e-value: 2.78515E-29
score: 102.287

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Tiffany.R1.2g134760.1_tif_v1 ID=Vfaba.Tiffany.R1.2g134760.1_tif_v1; Name=Vfaba.Tiffany.R1.2g134760.1; organism=Vicia faba; type=mRNA; length=597bp
ATGTTTTATCTCAGTAAGATTGAGCATAAATTGACCTTGCCTCCTTCTCT
TCTCGCTCTTCCTATTGGAGAAGCCATACACACGGAGCTTGAGAGGCTTT
TCTTGGATAAGGTAATTGCAAACCTGGGCCTTTGTGTATCTGTTTATGAT
ATCATATCCATGGAGGGCGGGTCTATCTTCCCTGGTGACGGTGCTCCGAC
CTACCTGGTGGTATTTAATTTGATTATGTTTCGTCCATTTCCGGGGGAGA
TTATTACTGGAAAACTTGTTTCATCTGATGCTGATGGCTTGCGCTTATCC
ATTGAATTCTTTGACGACATTTACATTCCTACTCATCACGTGCCCAATCC
AAACCGCTATGAACCTGAAAATAGTAACAAAAACAAAGGCACATGGTTTT
GGGATTATGGTGAAGAAATTGATTCATCATTTAATATTAATTATACTGAC
AAGATCAAATTCCAAGTTCAAAGTGTGAGTTACCCTCCAATTCCAGTTGA
GCAACCAAAAGAATCAAAGCCATTTGCTCCAATGTTAGTTAGTGACAAAC
GGAATTTCAGGAGAAAACAAGACCGACTTTGGAGGATATGGAACTGA
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protein sequence of Vfaba.Tiffany.R1.2g134760.1_tif_v1

>Vfaba.Tiffany.R1.2g134760.1_tif_v1 ID=Vfaba.Tiffany.R1.2g134760.1_tif_v1; Name=Vfaba.Tiffany.R1.2g134760.1_tif_v1; organism=Vicia faba; type=polypeptide; length=198bp
MFYLSKIEHKLTLPPSLLALPIGEAIHTELERLFLDKVIANLGLCVSVYD
IISMEGGSIFPGDGAPTYLVVFNLIMFRPFPGEIITGKLVSSDADGLRLS
IEFFDDIYIPTHHVPNPNRYEPENSNKNKGTWFWDYGEEIDSSFNINYTD
KIKFQVQSVSYPPIPVEQPKESKPFAPMLVSDKRNFRRKQDRLWRIWN
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mRNA from alignment at chr2:1055517232..1055517828-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Tiffany.R1.2g134760.1_tif_v1 ID=Vfaba.Tiffany.R1.2g134760.1_tif_v1; Name=Vfaba.Tiffany.R1.2g134760.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1055517232..1055517828- (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR036898RNA_pol_Rpb7-like_N_sf
IPR013238RNA_pol_III_Rbc25
IPR005576Rpb7-like_N
IPR045113Rpb7-like
Vocabulary: Biological Process
TermDefinition
GO:0006351DNA-templated transcription
GO:0006352DNA-templated transcription initiation