Vfaba.Tiffany.R1.2g140560.1

Transcript Overview


Name	Vfaba.Tiffany.R1.2g140560.1
Unique Name	Vfaba.Tiffany.R1.2g140560.1_tif_v1
Type	mRNA
Organism	Vicia faba (Faba bean)
Sequence length	738

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr2	chromosome	chr2:1109985874..1109986611 -	Vicia faba cv. Tiffany genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vicia faba cv. Tiffany genome v1.0	2023-05-02
InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins	2023-05-10
Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL	2023-05-10
Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot	2023-05-10
Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11	2023-05-10

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
tifzwsR223	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
tiftifR146	Vicia faba cv. Tiffany genome v1.0	Vicia faba
tifvfhR144	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
tifvfhR160	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
tifvuR297	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
tifvuR332	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
tifvrvR257	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
tifvuaR273	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
tifvssR251	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
tifvssR269	Vicia sativa cv. Studenica genome v1.0	Vicia sativa

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.2g140560	Vfaba.Tiffany.R1.2g140560_tif_v1	Vicia faba	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.2g140560.1_tif_v1-exon	Vfaba.Tiffany.R1.2g140560.1_tif_v1-exon-chr2_tif_v1:1109985874..1109986611	Vicia faba	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.2g140560.1_tif_v1-cds	Vfaba.Tiffany.R1.2g140560.1_tif_v1-cds-chr2_tif_v1:1109985874..1109986611	Vicia faba	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.2g140560.1_tif_v1	Vfaba.Tiffany.R1.2g140560.1_tif_v1	Vicia faba	polypeptide
Vfaba.Tiffany.R1.2g140560.1_tif_v1	Vfaba.Tiffany.R1.2g140560.1_tif_v1-protein	Vicia faba	polypeptide

Homology

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BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NJV9|A0A2Z6NJV9_TRISU (tRNA-intron lyase OS=Trifolium subterraneum OX=3900 GN=TSUD_331750 PE=3 SV=1)

HSP 1 Score: 435.261 bits (1118), Expect = 3.401e-153
Identity = 207/245 (84.49%), Postives = 223/245 (91.02%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLKNYAVEERTISKWSPEQCRERSL 245
            MAPRWKGKDAKSKKDAEAEAL+EPMS I+SQLQSSLVQSN CGSLSD+ VH+AVQAEQLDLLDKA FG+PVR V KDMYWFQLTLEEAFYLCY LKCLKIN GADT P NDE+LWH F SKK+AF  +YKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVL+ S D+DDD +NGRLRVWSDV C+TRLLGSVAKTLLVLY+NKNGHSD SPL L NY +EERTIS+WSPEQCRERS+
Sbjct:    1 MAPRWKGKDAKSKKDAEAEALREPMSTIISQLQSSLVQSNTCGSLSDNCVHLAVQAEQLDLLDKACFGRPVRTVEKDMYWFQLTLEEAFYLCYFLKCLKINGGADTGPSNDEQLWHYFKSKKEAFPCFYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLILSHDSDDD-LNGRLRVWSDVHCSTRLLGSVAKTLLVLYINKNGHSDESPLCLANYTIEERTISRWSPEQCRERSI 244

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BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7YDL4|A0A3Q7YDL4_CICAR (tRNA-intron lyase OS=Cicer arietinum OX=3827 GN=LOC101495092 PE=3 SV=1)

HSP 1 Score: 428.328 bits (1100), Expect = 1.936e-150
Identity = 201/239 (84.10%), Postives = 218/239 (91.21%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLKNYAVEERTISKWSPEQ 239
            MAPRWKGKDAKSKKDAEAEALKEPMSKI+SQL +SLV SN CG L D+SVH+AVQAEQLDLLDKA FG+PVR+V KDMYWFQL+LEEAFYLCYSLKCLKIN G+DT P NDEELWHCF SKK+AF F+YKAYSHLRMKNWVVRSGAQYGVD IVYRHHPARVHSEYGVLV S +N DD++NGRLRVWSDV CTTRLLGSVAKTLLVLY+NKNGHSD SP  L+NY +EERTIS+WSPEQ
Sbjct:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIISQLHTSLVLSNTCGFLCDNSVHLAVQAEQLDLLDKACFGRPVRSVEKDMYWFQLSLEEAFYLCYSLKCLKINGGSDTGPSNDEELWHCFKSKKEAFPFFYKAYSHLRMKNWVVRSGAQYGVDLIVYRHHPARVHSEYGVLVLSHENVDDDINGRLRVWSDVHCTTRLLGSVAKTLLVLYINKNGHSDESPSCLENYTIEERTISRWSPEQ 239

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BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3PPX2|A0A2K3PPX2_TRIPR (tRNA-intron lyase OS=Trifolium pratense OX=57577 GN=L195_g014083 PE=3 SV=1)

HSP 1 Score: 426.017 bits (1094), Expect = 1.573e-148
Identity = 203/245 (82.86%), Postives = 219/245 (89.39%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLKNYAVEERTISKWSPEQCRERSL 245
            MAPRWKGKDAKSKKDAEAEAL+EPMS I+SQLQSSLVQSN CG LSD+ VH+AVQAEQLDLLDK+ FG+PVR V KDMYWFQLTLEEAFYLCY LKCLKIN GADT P NDE+LW  F SKK+AF  +YKAYSHLRMKNWVVRSGAQYGVDFI+YRHHPARVHSEYGVLV S DNDDD  NGRLRVWSDV C+TRLLGSVAKTLLVLY+NKNG +D SPL L NY +EERTIS+WSPEQCRERS+
Sbjct:   54 MAPRWKGKDAKSKKDAEAEALREPMSMIISQLQSSLVQSNTCGFLSDNCVHLAVQAEQLDLLDKSCFGRPVRTVEKDMYWFQLTLEEAFYLCYFLKCLKINGGADTGPSNDEQLWRYFKSKKEAFPCFYKAYSHLRMKNWVVRSGAQYGVDFIIYRHHPARVHSEYGVLVLSHDNDDDP-NGRLRVWSDVHCSTRLLGSVAKTLLVLYINKNGQNDESPLCLANYTIEERTISRWSPEQCRERSV 297

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/TrEMBL
Match: tr|A2Q3E8|A2Q3E8_MEDTR (tRNA-splicing endonuclease subunit Sen2 OS=Medicago truncatula OX=3880 GN=11414349 PE=3 SV=1)

HSP 1 Score: 420.239 bits (1079), Expect = 2.904e-147
Identity = 205/247 (83.00%), Postives = 219/247 (88.66%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCL--KINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLKNYAVEERTISKWSPEQCRERSL 245
            MAPRWKGKDAKSKK+AEAEALKEPMSKI+SQLQSSLVQSN CG LSD+ VH+ VQAEQLDLLDKA FG+PVR V KDMYWFQLT+EEAFYLCYSLKCL  KIN GADT PLNDEELWH F SKK+ F ++YKAYSHLRMKNWVVRSGAQYGVD IVYRHHPARVHSEYGVLV S D D D +NGRLRVWSDV CTTRLLG VAKTLLVLYVNKNG++D S L L NY VEERTIS+WSPEQCRERS+
Sbjct:    1 MAPRWKGKDAKSKKEAEAEALKEPMSKIISQLQSSLVQSNTCGFLSDNCVHLTVQAEQLDLLDKACFGRPVRIVEKDMYWFQLTVEEAFYLCYSLKCLKIKINVGADTGPLNDEELWHYFRSKKETFPYFYKAYSHLRMKNWVVRSGAQYGVDLIVYRHHPARVHSEYGVLVLSHDKDGD-LNGRLRVWSDVHCTTRLLGGVAKTLLVLYVNKNGNNDESLLCLTNYTVEERTISRWSPEQCRERSI 246

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NPD0|A0A2Z6NPD0_TRISU (tRNA-intron lyase OS=Trifolium subterraneum OX=3900 GN=TSUD_190950 PE=3 SV=1)

HSP 1 Score: 413.69 bits (1062), Expect = 1.450e-144
Identity = 204/246 (82.93%), Postives = 216/246 (87.80%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKIN-RGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLKNYAVEERTISKWSPEQCRERSL 245
            MAPRWKGKDAKSKKDAE EALKEPMS I+SQLQSSLVQSN CG LSD+ VH+AVQ EQLDLL+KA FG+PVR V KD+YWFQLTLEEAFYLCY LKCLKIN  GAD SPLNDEELW  F SKK+A   +YKAYSHLR KNWVV SGAQYGVDFIVYRHHPARVHSEYGVLV S DNDDD +NGRLRVWSDV C+TRLLGSVAKTLLVLYVNKNGHSD SPL L NY +EERTIS+WS EQCRERSL
Sbjct:    1 MAPRWKGKDAKSKKDAEVEALKEPMSNIISQLQSSLVQSNTCGFLSDNCVHLAVQGEQLDLLEKACFGRPVRIVEKDIYWFQLTLEEAFYLCYFLKCLKINGGGADDSPLNDEELWRYFKSKKEALPCFYKAYSHLRSKNWVVMSGAQYGVDFIVYRHHPARVHSEYGVLVLSHDNDDD-LNGRLRVWSDVHCSTRLLGSVAKTLLVLYVNKNGHSDESPLCLANYTIEERTISRWSSEQCRERSL 245

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3N3Y5|A0A2K3N3Y5_TRIPR (tRNA-intron lyase OS=Trifolium pratense OX=57577 GN=L195_g021005 PE=3 SV=1)

HSP 1 Score: 410.223 bits (1053), Expect = 3.032e-143
Identity = 198/245 (80.82%), Postives = 216/245 (88.16%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLKNYAVEERTISKWSPEQCRERSL 245
            MAPRWKGKDAKSKKDAEAEAL+EPMSKI+SQLQSS VQSN CG LSD+ VH+AVQ EQLDLLDKA FG+PVR V KDMYWFQLTLEEAFYLCY LKCL+IN  AD SPL++EELW  F SKK+AF  +YKAYSHLR+KNWVVRSGAQYGVDFIVYRHHPA VHSEYGVLV S DND D +NGRLRVWSD  C+TRLLGSVAKTLLVLY+NKNG +D SPL L NY +EERTIS+WSPEQCRERS+
Sbjct:    1 MAPRWKGKDAKSKKDAEAEALREPMSKIISQLQSSFVQSNTCGFLSDNCVHLAVQGEQLDLLDKACFGRPVRIVEKDMYWFQLTLEEAFYLCYFLKCLEINGRADDSPLSNEELWRYFKSKKEAFPCFYKAYSHLRIKNWVVRSGAQYGVDFIVYRHHPALVHSEYGVLVLSHDNDAD-LNGRLRVWSDXHCSTRLLGSVAKTLLVLYINKNGQNDESPLCLANYTIEERTISRWSPEQCRERSV 244

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BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/TrEMBL
Match: tr|V7CYA6|V7CYA6_PHAVU (tRNA-intron lyase OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G138100g PE=3 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 9.132e-129
Identity = 181/243 (74.49%), Postives = 210/243 (86.42%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLKNYAVEERTISKWSPEQCRER 243
            MAPRWKGKDA++KKDAEAEALKEPMSKIVSQL+SSLVQS+ CG LSD+SV +AV  EQLDLLDKA FG+PVR + KD +WFQL+ EEAFYLCYSLKCLKIN G+ T P NDEELWH   SKK+ F  +YKAYSHLRMKNWVVRSG+QYGVDF++YRHHP+RVHSEYGVLV S D +D ++NGRLRVWSD+ CTTRL+GSVAK LLVL+VNK G+++ SPL L NY VEE TI++WSPEQ RE+
Sbjct:   91 MAPRWKGKDAQAKKDAEAEALKEPMSKIVSQLKSSLVQSDTCGLLSDNSVQLAVGVEQLDLLDKACFGRPVRTIEKDKHWFQLSFEEAFYLCYSLKCLKIN-GSGTGPQNDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGSQYGVDFVIYRHHPSRVHSEYGVLVLS-DGEDKDLNGRLRVWSDIHCTTRLVGSVAKILLVLHVNKIGNNNESPLCLANYTVEECTITRWSPEQNREK 331

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/TrEMBL
Match: tr|C6T7C2|C6T7C2_SOYBN (tRNA-intron lyase OS=Glycine max OX=3847 GN=100810335 PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 1.557e-119
Identity = 187/244 (76.64%), Postives = 205/244 (84.02%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGA-DTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLKNYAVEERTISKWSPEQCRER 243
            MAPRWKGKDAK+KKDA+AEALKEPMSKIVSQLQSSLVQSN CG LS SSVH+AV AEQL LLDKA FG PVR V KD   FQL+ EEAFYLCYSLKCLKIN  + DTSP N EELWH   SKK+ F  +YKAYSHLRMKNWVVRSGAQYG DF+VY HHPARVHSEYGVLV S D +D ++NGRLRVWSDV CTTRLLG VAK LLVLYVN+NG S+ SPL L NY +EE TI++W+PEQCRE+
Sbjct:    1 MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQLQSSLVQSNTCGFLSGSSVHLAVGAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSPQNSEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYCHHPARVHSEYGVLVLS-DGEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGSSNESPLCLANYTIEEHTITRWNPEQCREK 243

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2PWL1|A0A0B2PWL1_GLYSO (tRNA-intron lyase OS=Glycine soja OX=3848 GN=D0Y65_026266 PE=3 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 1.557e-119
Identity = 187/244 (76.64%), Postives = 205/244 (84.02%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGA-DTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLKNYAVEERTISKWSPEQCRER 243
            MAPRWKGKDAK+KKDA+AEALKEPMSKIVSQLQSSLVQSN CG LS SSVH+AV AEQL LLDKA FG PVR V KD   FQL+ EEAFYLCYSLKCLKIN  + DTSP N EELWH   SKK+ F  +YKAYSHLRMKNWVVRSGAQYG DF+VY HHPARVHSEYGVLV S D +D ++NGRLRVWSDV CTTRLLG VAK LLVLYVN+NG S+ SPL L NY +EE TI++W+PEQCRE+
Sbjct:    1 MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQLQSSLVQSNTCGFLSGSSVHLAVGAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSPQNSEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYCHHPARVHSEYGVLVLS-DGEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGSSNESPLCLANYTIEEHTITRWNPEQCREK 243

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/TrEMBL
Match: tr|I1JXC8|I1JXC8_SOYBN (tRNA-intron lyase OS=Glycine max OX=3847 GN=100807021 PE=3 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.356e-117
Identity = 185/244 (75.82%), Postives = 205/244 (84.02%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGA-DTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLKNYAVEERTISKWSPEQCRER 243
            MAPRWKGKDAK+KKDA+AEALKEPMSKIVSQ+QSSLVQS+  G LS SSVH+ V+AEQL LLDKA FG PVR V KD   FQL+ EEAFYLCYSLKCLKIN  + DTS   DEELWH   SKK+ F  +YKAYSHLRMKNWVVRSGAQYG DF+VYRHHPARVHSEYGVLV S D +D ++NGRLRVWSDV CTTRLLG VAK LLVLYVN+NG S+ SPL L NY VEERTI++W+PEQCRE+
Sbjct:    1 MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQIQSSLVQSDTRGFLSGSSVHLVVEAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSSQTDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYRHHPARVHSEYGVLVLS-DEEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGGSNESPLCLANYTVEERTITRWNPEQCREK 243

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9M1E8|SEN21_ARATH (tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana OX=3702 GN=SEN1 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 7.093e-84
Identity = 134/244 (54.92%), Postives = 169/244 (69.26%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNK--NGHSDGSPLYLKNYAVEERTISKWSPEQCRE 242
            MAPRWK K A      EA+AL EP+SK VS+L+SSL Q+ A G LS  +V ++V++E+ +LLD+  FG+ V    KD  W QL+ EEAF+L Y LKC+KI      S  N+ +LW   +S KQ F+  YKAYSHLR KNW+VRSG QYGVDF+VYRHHP+ VHSEY VLV+S   +D     RL+VWSD+ C+ RL GSVAK+LLVLYVN+  N      PL L++Y VEE+TI +WSPE  RE
Sbjct:    1 MAPRWKWKGA------EAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCCFGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHG-RSLENEVDLWRSMSSFKQDFAILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGGND-----RLKVWSDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRE 232

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LSS3|SEN22_ARATH (tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana OX=3702 GN=SEN2 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 7.722e-80
Identity = 130/244 (53.28%), Postives = 165/244 (67.62%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLY--LKNYAVEERTISKWSPEQCRE 242
            MAPRWK K A      EA+AL EP+SK VS+LQ SL ++ + G+LS  +V +AV+ EQ +LLD+  FG+ V +  K   W QL+ EEAF+L Y+LKC+KI+        N+ + W    SK+  F  ++KAYSHLR KNWV+RSG QYGVDF+ YRHHP+ VHSEY VLV+S D+D      RLRVWSD+ C  RL GSVAKTLL LYVN N   +   L   L+N+ VEE+TIS+WSPE  RE
Sbjct:    1 MAPRWKWKGA------EAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCCFGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLE-NEVDTWLYMKSKRPNFPMFFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGDSD------RLRVWSDIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRE 231

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q5Z6B1|SEN2_ORYSJ (Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0530700 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.121e-68
Identity = 114/246 (46.34%), Postives = 153/246 (62.20%), Query Frame = 0

Query:    2 APRWK-GKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSD--SSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYV-NKNGHSDGSPLYLKNYAVEERTISKWSPEQCRER 243
             PRWK GKD K   D  + A   PMS IVS+L++S + S     LS    S  + V  EQ  +L++A FG  + N     +WFQL+ EE FYLC++L C++++   D   +++ ELW  F S  ++F   YKAY+HLR+KNWVVRSG QYG DF+ YRHHPA VHSE+ V+V  +  +  N  GRL VWSD+ C  R  GSVAKTLLVL + + +     SP  L+   V ERTI++W  +QCRE+
Sbjct:    5 GPRWKKGKDGK---DFASLAAANPMSAIVSELKASFISSKPVAILSGPGGSAVLGVGPEQAVILNRAAFGHAIENATAQKHWFQLSPEEVFYLCHALNCIRVD-SLDNKQMSEIELWDYFRSGSESFPEMYKAYAHLRLKNWVVRSGLQYGADFVAYRHHPALVHSEFAVVVVPEGAEFGNRCGRLEVWSDLLCALRASGSVAKTLLVLTISSSSKCELSSPDCLEQLVVHERTITRWILQQCREQ 246

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6P7W5|SEN2_MOUSE (tRNA-splicing endonuclease subunit Sen2 OS=Mus musculus OX=10090 GN=Tsen2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 9.848e-25
Identity = 62/180 (34.44%), Postives = 93/180 (51.67%), Query Frame = 0

Query:   72 RNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLR---VWSDVQCTTRLLGSVAKTLLVLYVNK----NGHSDGSPLYLKNYAVEERTISKWSPEQCRERS 244
            RN  +   + QL+LEEAF+L Y+L CL I    +  PL   +LW  F + +  F   Y AY + R K WV + G +YG D ++YR  P   H+ Y V++   +  DDN  G LR    W  +   +R+ G+V+K L++ Y+ K          +P  +K   V+E  +S+W     RERS
Sbjct:  283 RNPYRIFEYLQLSLEEAFFLAYALGCLSIY--YEKEPLTIVKLWQAFTAVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVII---ELLDDNYEGSLRRPFSWKSLAALSRVSGNVSKELMLCYLIKPSTMTAEDMETPECMKRIQVQEVILSRWV--SSRERS 455

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q5M954|SEN2_RAT (tRNA-splicing endonuclease subunit Sen2 OS=Rattus norvegicus OX=10116 GN=Tsen2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.430e-24
Identity = 61/180 (33.89%), Postives = 93/180 (51.67%), Query Frame = 0

Query:   72 RNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLR---VWSDVQCTTRLLGSVAKTLLVLYVNK----NGHSDGSPLYLKNYAVEERTISKWSPEQCRERS 244
            RN  +   + QL+LEEAF+L Y+L CL I    +  PL   +LW  F + +  F   Y AY + R K WV + G +YG D ++YR  P   H+ Y V++   +  DDN  G LR    W  +   +R+ G+V+K L++ Y+ K          +P  ++   V+E  +S+W     RERS
Sbjct:  286 RNPYRIFEYLQLSLEEAFFLAYALGCLSIY--YEKEPLTIVKLWQAFTAVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVII---ELVDDNFEGSLRRPFSWKSLAALSRVSGNVSKELMLCYLIKPSTMTNEDMETPECMRRIQVQEVILSRWV--SSRERS 458

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q5ZIN2|SEN2_CHICK (tRNA-splicing endonuclease subunit Sen2 OS=Gallus gallus OX=9031 GN=TSEN2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.508e-23
Identity = 62/180 (34.44%), Postives = 90/180 (50.00%), Query Frame = 0

Query:   72 RNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLR---VWSDVQCTTRLLGSVAKTLLVLYVNKNG----HSDGSPLYLKNYAVEERTISKWSPEQCRERS 244
            RN  +   + QL+LEEAF+L Y+L CL +  G +  PL   +LW  F+  K +F   Y AY + R K WV + G +YG D ++YR  P   H+ Y V+    +  DDN  G LR    W  +    R   + +K LL+ Y+ K          +P  LK   V+E  +++W     RERS
Sbjct:  284 RNPFRIFEYLQLSLEEAFFLVYALGCLTVYYGEE--PLTILKLWEIFSEVKPSFKTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIA---ELVDDNFEGSLRRPLSWMSLSGLNRTTVNASKELLLCYLIKPSDMTEEEMATPECLKRIKVQELIVTRWV--SSRERS 456

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8NCE0|SEN2_HUMAN (tRNA-splicing endonuclease subunit Sen2 OS=Homo sapiens OX=9606 GN=TSEN2 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 6.533e-22
Identity = 61/180 (33.89%), Postives = 91/180 (50.56%), Query Frame = 0

Query:   72 RNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLR---VWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDG----SPLYLKNYAVEERTISKWSPEQCRERS 244
            RN  +   + QL+LEEAF+L Y+L CL I    +  PL   +LW  F   +  F   Y AY + R K WV + G +YG D ++YR  P   H+ Y V++   +  DD+  G LR    W  +   +R+  +V+K L++ Y+ K          SP  +K   V+E  +S+W     RERS
Sbjct:  288 RNPYRIFEYLQLSLEEAFFLVYALGCLSIY--YEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVII---ELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELMLCYLIKPSTMTDKEMESPECMKRIKVQEVILSRWV--SSRERS 460

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9P6Y2|SEN2_NEUCR (Probable tRNA-splicing endonuclease subunit tsp-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=tsp-2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.888e-13
Identity = 43/145 (29.66%), Postives = 67/145 (46.21%), Query Frame = 0

Query:   77 DMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFN-------------SKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDND----DDNVNGRLRVWSDVQCTTRLLGSVAKTL 204
            D   FQL  EEAF+L + L  L++      +P+++E+L                  S +  F   Y  Y H R   WV R G ++GVD+I+Y+  P   HSE+G++V    +D    +       + WS +    R+L  V K+L
Sbjct:  444 DKEHFQLAPEEAFFLTFGLGALRVVDPVTEAPISNEQLLIKLRANSYFPPRSVDNLSPEDPFLVQYAVYHHFRSLGWVPRHGIKFGVDWIIYQRGPVFDHSEFGIMVVPSFSDPRWSEFEHEESKKTWSWLMGVNRVLSHVLKSL 588

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8TFH7|SEN2_SCHPO (Probable tRNA-splicing endonuclease subunit sen2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sen2 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 6.023e-11
Identity = 49/199 (24.62%), Postives = 87/199 (43.72%), Query Frame = 0

Query:   81 FQLTLEEAFYLCYSLKCLKIN---RGADTSPL---------NDEELWHCFNSKK----------QAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLY---------------LKNYAVEERTISKWSPEQCRE 242
             QLT  EAF+L  SL  L+IN      +  P+         N   L H ++ ++            F     AY + R + WVV++G ++ VDF++Y+  P   H+E+ +L+     +    N +   W +V C  R++  V K+L++ YV      D + ++               L+ Y +   T+ +W P + R+
Sbjct:  186 LQLTFPEAFFLA-SLGVLRINYENPNFELLPILKLFANIVANSVALTHDYSLQQSHEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKFSVDFLLYKKGPVFSHAEFAILLIPCVGNKQKYNMQ---WHEVHCLNRVIAQVKKSLILCYVQCPSIEDFNKIWKNQASMNEWDWAESVLRQYLIRCVTLRRWVPSRNRD 380

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q74ZY5|SEN2_ASHGO (tRNA-splicing endonuclease subunit SEN2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=SEN2 PE=3 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 1.629e-10
Identity = 38/123 (30.89%), Postives = 60/123 (48.78%), Query Frame = 0

Query:  129 YKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDG------SPLYLKNYA---VEERTISKWSPEQCRE 242
            Y AY H R   W VRSG ++G DF++YR  P   H+E+ V+V + D   D        ++      R++G   KTL++ YV +   +D       +  Y++ +A   V E    +W P + RE
Sbjct:  242 YAAYHHYRSHGWCVRSGIKFGCDFLLYRRGPPFHHAEFSVMVLAPDERHD--------YTWYSTVARVVGGAQKTLVLAYVARRAAADQLAALWHARRYMEAFALFEVHELVYRRWLPGKNRE 356

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. Araport11
Match: AT3G45590.2 (| splicing endonuclease 1 | Chr3:16733062-16733775 FORWARD LENGTH=237 | 201606)

HSP 1 Score: 253.062 bits (645), Expect = 7.257e-85
Identity = 134/244 (54.92%), Postives = 169/244 (69.26%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNK--NGHSDGSPLYLKNYAVEERTISKWSPEQCRE 242
            MAPRWK K A      EA+AL EP+SK VS+L+SSL Q+ A G LS  +V ++V++E+ +LLD+  FG+ V    KD  W QL+ EEAF+L Y LKC+KI      S  N+ +LW   +S KQ F+  YKAYSHLR KNW+VRSG QYGVDF+VYRHHP+ VHSEY VLV+S   +D     RL+VWSD+ C+ RL GSVAK+LLVLYVN+  N      PL L++Y VEE+TI +WSPE  RE
Sbjct:    1 MAPRWKWKGA------EAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCCFGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHG-RSLENEVDLWRSMSSFKQDFAILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGGND-----RLKVWSDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRE 232

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. Araport11
Match: AT3G45590.1 (| splicing endonuclease 1 | Chr3:16733062-16733775 FORWARD LENGTH=237 | 201606)

HSP 1 Score: 253.062 bits (645), Expect = 7.257e-85
Identity = 134/244 (54.92%), Postives = 169/244 (69.26%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNK--NGHSDGSPLYLKNYAVEERTISKWSPEQCRE 242
            MAPRWK K A      EA+AL EP+SK VS+L+SSL Q+ A G LS  +V ++V++E+ +LLD+  FG+ V    KD  W QL+ EEAF+L Y LKC+KI      S  N+ +LW   +S KQ F+  YKAYSHLR KNW+VRSG QYGVDF+VYRHHP+ VHSEY VLV+S   +D     RL+VWSD+ C+ RL GSVAK+LLVLYVN+  N      PL L++Y VEE+TI +WSPE  RE
Sbjct:    1 MAPRWKWKGA------EAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCCFGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHG-RSLENEVDLWRSMSSFKQDFAILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGGND-----RLKVWSDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRE 232

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. Araport11
Match: AT5G60230.1 (| splicing endonuclease 2 | Chr5:24250185-24250937 REVERSE LENGTH=250 | 201606)

HSP 1 Score: 243.432 bits (620), Expect = 7.900e-81
Identity = 130/244 (53.28%), Postives = 165/244 (67.62%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLY--LKNYAVEERTISKWSPEQCRE 242
            MAPRWK K A      EA+AL EP+SK VS+LQ SL ++ + G+LS  +V +AV+ EQ +LLD+  FG+ V +  K   W QL+ EEAF+L Y+LKC+KI+        N+ + W    SK+  F  ++KAYSHLR KNWV+RSG QYGVDF+ YRHHP+ VHSEY VLV+S D+D      RLRVWSD+ C  RL GSVAKTLL LYVN N   +   L   L+N+ VEE+TIS+WSPE  RE
Sbjct:    1 MAPRWKWKGA------EAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCCFGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLE-NEVDTWLYMKSKRPNFPMFFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGDSD------RLRVWSDIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRE 231

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. Araport11
Match: AT5G60230.2 (| splicing endonuclease 2 | Chr5:24250185-24250952 REVERSE LENGTH=255 | 201606)

HSP 1 Score: 243.432 bits (620), Expect = 8.699e-81
Identity = 130/244 (53.28%), Postives = 165/244 (67.62%), Query Frame = 0

Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLY--LKNYAVEERTISKWSPEQCRE 242
            MAPRWK K A      EA+AL EP+SK VS+LQ SL ++ + G+LS  +V +AV+ EQ +LLD+  FG+ V +  K   W QL+ EEAF+L Y+LKC+KI+        N+ + W    SK+  F  ++KAYSHLR KNWV+RSG QYGVDF+ YRHHP+ VHSEY VLV+S D+D      RLRVWSD+ C  RL GSVAKTLL LYVN N   +   L   L+N+ VEE+TIS+WSPE  RE
Sbjct:    6 MAPRWKWKGA------EAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCCFGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLE-NEVDTWLYMKSKRPNFPMFFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGDSD------RLRVWSDIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRE 236

[Close]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. Araport11
Match: AT3G45577.1 (| tRNA-intron endonuclease | Chr3:16728910-16729266 FORWARD LENGTH=118 | 201606)

HSP 1 Score: 78.1814 bits (191), Expect = 3.496e-18
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 0

Query:   41 ACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKN 139
            A G LS  +V ++ QAE   LLD+  FG+ V    KD  W QL+ EEAF+L Y LKC+KI+     S +N  +LW    S K  F+  YKAYSHLR KN
Sbjct:   24 ALGFLSSCNVFLSEQAE---LLDRYCFGRLVFGAEKDKRWIQLSYEEAFFLFYKLKCIKISLHGR-SLVNGVDLWRSIRSFKPNFTILYKAYSHLRSKN 118

The following BLAST results are available for this feature:

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/TrEMBL
BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/Swiss-Prot
BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. Araport11

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A2Z6NJV9\|A0A2Z6NJV9_TRISU	3.401e-153	84.49	tRNA-intron lyase OS=Trifolium subterraneum OX=390...	[more]
tr\|A0A3Q7YDL4\|A0A3Q7YDL4_CICAR	1.936e-150	84.10	tRNA-intron lyase OS=Cicer arietinum OX=3827 GN=LO...	[more]
tr\|A0A2K3PPX2\|A0A2K3PPX2_TRIPR	1.573e-148	82.86	tRNA-intron lyase OS=Trifolium pratense OX=57577 G...	[more]
tr\|A2Q3E8\|A2Q3E8_MEDTR	2.904e-147	83.00	tRNA-splicing endonuclease subunit Sen2 OS=Medicag...	[more]
tr\|A0A2Z6NPD0\|A0A2Z6NPD0_TRISU	1.450e-144	82.93	tRNA-intron lyase OS=Trifolium subterraneum OX=390...	[more]
tr\|A0A2K3N3Y5\|A0A2K3N3Y5_TRIPR	3.032e-143	80.82	tRNA-intron lyase OS=Trifolium pratense OX=57577 G...	[more]
tr\|V7CYA6\|V7CYA6_PHAVU	9.132e-129	74.49	tRNA-intron lyase OS=Phaseolus vulgaris OX=3885 GN...	[more]
tr\|C6T7C2\|C6T7C2_SOYBN	1.557e-119	76.64	tRNA-intron lyase OS=Glycine max OX=3847 GN=100810...	[more]
tr\|A0A0B2PWL1\|A0A0B2PWL1_GLYSO	1.557e-119	76.64	tRNA-intron lyase OS=Glycine soja OX=3848 GN=D0Y65...	[more]
tr\|I1JXC8\|I1JXC8_SOYBN	1.356e-117	75.82	tRNA-intron lyase OS=Glycine max OX=3847 GN=100807...	[more]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
sp\|Q9M1E8\|SEN21_ARATH	7.093e-84	54.92	tRNA-splicing endonuclease subunit Sen2-1 OS=Arabi...	[more]
sp\|Q9LSS3\|SEN22_ARATH	7.722e-80	53.28	tRNA-splicing endonuclease subunit Sen2-2 OS=Arabi...	[more]
sp\|Q5Z6B1\|SEN2_ORYSJ	5.121e-68	46.34	Probable tRNA-splicing endonuclease subunit Sen2 O...	[more]
sp\|Q6P7W5\|SEN2_MOUSE	9.848e-25	34.44	tRNA-splicing endonuclease subunit Sen2 OS=Mus mus...	[more]
sp\|Q5M954\|SEN2_RAT	2.430e-24	33.89	tRNA-splicing endonuclease subunit Sen2 OS=Rattus ...	[more]
sp\|Q5ZIN2\|SEN2_CHICK	4.508e-23	34.44	tRNA-splicing endonuclease subunit Sen2 OS=Gallus ...	[more]
sp\|Q8NCE0\|SEN2_HUMAN	6.533e-22	33.89	tRNA-splicing endonuclease subunit Sen2 OS=Homo sa...	[more]
sp\|Q9P6Y2\|SEN2_NEUCR	1.888e-13	29.66	Probable tRNA-splicing endonuclease subunit tsp-2 ...	[more]
sp\|Q8TFH7\|SEN2_SCHPO	6.023e-11	24.62	Probable tRNA-splicing endonuclease subunit sen2 O...	[more]
sp\|Q74ZY5\|SEN2_ASHGO	1.629e-10	30.89	tRNA-splicing endonuclease subunit SEN2 OS=Ashbya ...	[more]

BLAST of Vfaba.Tiffany.R1.2g140560.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G45590.2	7.257e-85	54.92	\| splicing endonuclease 1 \| Chr3:16733062-16733775...	[more]
AT3G45590.1	7.257e-85	54.92	\| splicing endonuclease 1 \| Chr3:16733062-16733775...	[more]
AT5G60230.1	7.900e-81	53.28	\| splicing endonuclease 2 \| Chr5:24250185-24250937...	[more]
AT5G60230.2	8.699e-81	53.28	\| splicing endonuclease 2 \| Chr5:24250185-24250952...	[more]
AT3G45577.1	3.496e-18	47.47	\| tRNA-intron endonuclease \| Chr3:16728910-1672926...	[more]

InterPro

Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1170.20		coord: 33..121 e-value: 6.4E-6 score: 27.7
IPR011856	tRNA endonuclease-like domain superfamily	GENE3D	3.40.1350.10		coord: 124..221 e-value: 2.3E-23 score: 84.0
IPR006677	tRNA intron endonuclease, catalytic domain-like	PFAM	PF01974	tRNA_int_endo	coord: 125..213 e-value: 3.8E-20 score: 71.7
IPR006677	tRNA intron endonuclease, catalytic domain-like	CDD	cd22363	tRNA-intron_lyase_C	coord: 129..213 e-value: 1.52314E-21 score: 83.6893
IPR006678	tRNA intron endonuclease, N-terminal	PFAM	PF02778	tRNA_int_endo_N	coord: 43..115 e-value: 4.4E-12 score: 45.5
IPR006676	tRNA-splicing endonuclease	PANTHER	PTHR21227	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2	coord: 3..74
IPR036167	tRNA intron endonuclease, catalytic domain-like superfamily	SUPERFAMILY	53032	tRNA-intron endonuclease catalytic domain-like	coord: 125..213

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1109985874..1109986611-

mRNA sequence

>Vfaba.Tiffany.R1.2g140560.1_tif_v1 ID=Vfaba.Tiffany.R1.2g140560.1_tif_v1; Name=Vfaba.Tiffany.R1.2g140560.1; organism=Vicia faba; type=mRNA; length=738bp
ATGGCACCAAGATGGAAAGGAAAAGATGCAAAATCGAAAAAGGATGCAGA
GGCTGAGGCACTTAAAGAACCCATGTCAAAGATTGTATCGCAACTTCAGT
CTTCTTTAGTTCAATCAAATGCTTGTGGATCTCTCTCTGATAGTTCTGTC
CACATAGCAGTGCAAGCTGAACAACTTGACCTGCTTGATAAAGCATACTT
TGGTCAACCTGTGAGAAACGTTGCAAAAGACATGTACTGGTTTCAATTAA
CCTTGGAGGAAGCATTCTACCTATGTTATTCCTTGAAATGCCTCAAGATT
AATCGTGGTGCTGATACTAGTCCCTTGAATGATGAAGAGTTGTGGCATTG
CTTCAACTCCAAGAAACAAGCATTCTCTTTTTACTACAAGGCTTATTCTC
ACCTTCGAATGAAAAACTGGGTTGTAAGGTCAGGGGCTCAGTATGGTGTA
GACTTCATTGTCTATCGTCATCATCCTGCACGGGTCCATTCTGAGTATGG
TGTACTTGTTCGATCACAGGATAATGATGATGATAATGTAAATGGAAGAT
TGAGAGTATGGTCTGATGTTCAATGCACTACTCGACTTCTTGGAAGTGTT
GCAAAAACCTTATTAGTTTTGTATGTTAACAAAAATGGTCACAGTGACGG
GTCTCCGTTATATTTGAAAAACTATGCTGTTGAAGAGCGCACGATCTCTA
AATGGAGTCCTGAACAATGTCGTGAAAGATCCTTATAG

protein sequence of Vfaba.Tiffany.R1.2g140560.1_tif_v1

>Vfaba.Tiffany.R1.2g140560.1_tif_v1 ID=Vfaba.Tiffany.R1.2g140560.1_tif_v1; Name=Vfaba.Tiffany.R1.2g140560.1_tif_v1; organism=Vicia faba; type=polypeptide; length=245bp
MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSV
HIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKI
NRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGV
DFIVYRHHPARVHSEYGVLVRSQDNDDDNVNGRLRVWSDVQCTTRLLGSV
AKTLLVLYVNKNGHSDGSPLYLKNYAVEERTISKWSPEQCRERSL

mRNA from alignment at chr2:1109985874..1109986611-

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>Vfaba.Tiffany.R1.2g140560.1_tif_v1 ID=Vfaba.Tiffany.R1.2g140560.1_tif_v1; Name=Vfaba.Tiffany.R1.2g140560.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1109985874..1109986611- (Vicia faba

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011856	tRNA_endonuc-like_dom_sf
IPR006677	tRNA_intron_Endonuc_cat-like
IPR006678	tRNA_intron_Endonuc_N
IPR006676	tRNA_splic
IPR036167	tRNA_intron_Endo_cat-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000213	tRNA-intron endonuclease activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation

Search form

Vfaba.Tiffany.R1.2g140560.1