Vfaba.Tiffany.R1.2g157920.1

Transcript Overview
NameVfaba.Tiffany.R1.2g157920.1
Unique NameVfaba.Tiffany.R1.2g157920.1_tif_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length342
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr2chromosomechr2:1248834684..1248835992 -Vicia faba cv. Tiffany genome v1.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g157920Vfaba.Tiffany.R1.2g157920_tif_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g157920.1_tif_v1-exonVfaba.Tiffany.R1.2g157920.1_tif_v1-exon-chr2_tif_v1:1248834684..1248834793Vicia fabaexon
Vfaba.Tiffany.R1.2g157920.1_tif_v1-exonVfaba.Tiffany.R1.2g157920.1_tif_v1-exon-chr2_tif_v1:1248835587..1248835784Vicia fabaexon
Vfaba.Tiffany.R1.2g157920.1_tif_v1-exonVfaba.Tiffany.R1.2g157920.1_tif_v1-exon-chr2_tif_v1:1248835959..1248835992Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g157920.1_tif_v1-cdsVfaba.Tiffany.R1.2g157920.1_tif_v1-cds-chr2_tif_v1:1248834684..1248834793Vicia fabaCDS
Vfaba.Tiffany.R1.2g157920.1_tif_v1-cdsVfaba.Tiffany.R1.2g157920.1_tif_v1-cds-chr2_tif_v1:1248835587..1248835784Vicia fabaCDS
Vfaba.Tiffany.R1.2g157920.1_tif_v1-cdsVfaba.Tiffany.R1.2g157920.1_tif_v1-cds-chr2_tif_v1:1248835959..1248835992Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g157920.1_tif_v1Vfaba.Tiffany.R1.2g157920.1_tif_v1Vicia fabapolypeptide
Vfaba.Tiffany.R1.2g157920.1_tif_v1Vfaba.Tiffany.R1.2g157920.1_tif_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y450|A0A1S2Y450_CICAR (uncharacterized protein LOC101504376 isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101504376 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.876e-54
Identity = 90/101 (89.11%), Postives = 93/101 (92.08%), Query Frame = 0
Query:   12 GHYFDGGGFMSASPFSAAVNASSVGFTNSSGGNGGVLPARTDPCMARSVSVHGCSQMQGQSSVPAREEKFDSFKDAGTNVSPAVSRRDMATQMSPEGSSCS 112
            G +FDGG FM ASPFSAAVN S+ GFTNSSGGNGGVLP R DPCMARSVSVHGCSQMQGQSS+PAREEKFD FKDAGTNVSPAVSRRDMATQMSPEGSSCS
Sbjct:  332 GPFFDGGNFMGASPFSAAVNVSADGFTNSSGGNGGVLPTRMDPCMARSVSVHGCSQMQGQSSIPAREEKFDGFKDAGTNVSPAVSRRDMATQMSPEGSSCS 432          
BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6PAG3|A0A2Z6PAG3_TRISU (Remorin_C domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_05090 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.309e-47
Identity = 90/102 (88.24%), Postives = 95/102 (93.14%), Query Frame = 0
Query:   12 GHYFDGGGFMSASPFSAAVNASSVGFTNSSGGNGG-VLPARTDPCMARSVSVHGCSQMQGQSSVPAREEKFDSFKDAGTNVSPAVSRRDMATQMSPEGSSCS 112
            GH+FDGG FM+ASPFSAAVNAS+ GFTNSSGGNGG  LP RTDPCMARSVSVHGCSQ QGQSS+P REEKFD+FKDAGTNVSPAVSRRDMATQMSPEGSSCS
Sbjct:  305 GHFFDGGSFMTASPFSAAVNASADGFTNSSGGNGGGALPTRTDPCMARSVSVHGCSQTQGQSSIPTREEKFDAFKDAGTNVSPAVSRRDMATQMSPEGSSCS 406          
BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072VDZ7|A0A072VDZ7_MEDTR (Carboxy-terminal region remorin OS=Medicago truncatula OX=3880 GN=11428035 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.354e-47
Identity = 91/103 (88.35%), Postives = 97/103 (94.17%), Query Frame = 0
Query:   12 GHYFDGGGFMSA-SPFSAAVNASSVGFTNSSGGNGGV-LPARTDPCMARSVSVHGCSQMQGQSSVPAREEKFDSFKDAGTNVSPAVSRRDMATQMSPEGSSCS 112
            GH+FDGG FM+A SPFSAAVNAS+ GFTNSSGGNGG  LP RTDPCMARSVSVHGCSQMQGQSS+P+REEKFD+FKDAGTNVSPAVSRRDMATQMSPEGSSCS
Sbjct:  274 GHFFDGGNFMTAASPFSAAVNASADGFTNSSGGNGGGGLPTRTDPCMARSVSVHGCSQMQGQSSIPSREEKFDAFKDAGTNVSPAVSRRDMATQMSPEGSSCS 376          
BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. UniProtKB/TrEMBL
Match: tr|G7I3I9|G7I3I9_MEDTR (Carboxy-terminal region remorin OS=Medicago truncatula OX=3880 GN=11428035 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.213e-46
Identity = 91/103 (88.35%), Postives = 97/103 (94.17%), Query Frame = 0
Query:   12 GHYFDGGGFMSA-SPFSAAVNASSVGFTNSSGGNGGV-LPARTDPCMARSVSVHGCSQMQGQSSVPAREEKFDSFKDAGTNVSPAVSRRDMATQMSPEGSSCS 112
            GH+FDGG FM+A SPFSAAVNAS+ GFTNSSGGNGG  LP RTDPCMARSVSVHGCSQMQGQSS+P+REEKFD+FKDAGTNVSPAVSRRDMATQMSPEGSSCS
Sbjct:  336 GHFFDGGNFMTAASPFSAAVNASADGFTNSSGGNGGGGLPTRTDPCMARSVSVHGCSQMQGQSSIPSREEKFDAFKDAGTNVSPAVSRRDMATQMSPEGSSCS 438          
BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3E4W0|A0A1S3E4W0_CICAR (uncharacterized protein LOC101504376 isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101504376 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.114e-46
Identity = 83/101 (82.18%), Postives = 85/101 (84.16%), Query Frame = 0
Query:   12 GHYFDGGGFMSASPFSAAVNASSVGFTNSSGGNGGVLPARTDPCMARSVSVHGCSQMQGQSSVPAREEKFDSFKDAGTNVSPAVSRRDMATQMSPEGSSCS 112
            G +FDGG FM ASPFSAAVN S+ GFTNSSGGNGGVLP R DPCMARSVSVHGCSQMQ        EEKFD FKDAGTNVSPAVSRRDMATQMSPEGSSCS
Sbjct:  332 GPFFDGGNFMGASPFSAAVNVSADGFTNSSGGNGGVLPTRMDPCMARSVSVHGCSQMQ--------EEKFDGFKDAGTNVSPAVSRRDMATQMSPEGSSCS 424          
BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. UniProtKB/TrEMBL
Match: tr|V7CTZ3|V7CTZ3_PHAVU (Remorin_C domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G022700g PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.149e-37
Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 0
Query:   14 YFDGGG---FMSASPFSAAVNASSV--GFTNSSGGNGGVLPARTDPCMARSVSVHGCSQMQGQSSVPAREEKFDSFKDAGTNVSPAVSRRDMATQMSPEGSSCS 112
             FDGG    FMSASPFSAAV+ S+   G   SSGG+ G +P RTDPCMARSVSVHGCSQMQ QSS+PA+ EKFD FKDAGTNVSPA+SRRDMATQMSPEGSSCS
Sbjct:  328 LFDGGNSGSFMSASPFSAAVSVSAAADGLMASSGGSCGAVPTRTDPCMARSVSVHGCSQMQSQSSLPAQGEKFDGFKDAGTNVSPAISRRDMATQMSPEGSSCS 431          
BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MET2|A0A4D6MET2_VIGUN (Remorin OS=Vigna unguiculata OX=3917 GN=DEO72_LG7g249 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.509e-37
Identity = 78/104 (75.00%), Postives = 86/104 (82.69%), Query Frame = 0
Query:   14 YFDGGG---FMSASPFSAAVNASSV--GFTNSSGGNGGVLPARTDPCMARSVSVHGCSQMQGQSSVPAREEKFDSFKDAGTNVSPAVSRRDMATQMSPEGSSCS 112
             FDGG    FM+ASPFSAAV+ S+   G   SSGG+ G +P RTDPCMARSVSVHGCSQMQ QSS+PA+ EKFD FKDAGTNVSPA+SRRDMATQMSPEGSSCS
Sbjct:  328 LFDGGNSGSFMTASPFSAAVSVSAAADGLMASSGGSCGAVPTRTDPCMARSVSVHGCSQMQSQSSLPAQGEKFDGFKDAGTNVSPAISRRDMATQMSPEGSSCS 431          
BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371GSV3|A0A371GSV3_MUCPR (Remorin 4.1 (Fragment) OS=Mucuna pruriens OX=157652 GN=REM4.1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.974e-37
Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 0
Query:   14 YFDGGG---FMSASPFSAAVNASSV--GFTNSSGGNGGVLPARTDPCMARSVSVHGCSQMQGQSSVPAREEKFDSFKDAGTNVSPAVSRRDMATQMSPEGSSCS 112
             F+GG    FM+ASPFSAAV+ S+   G T  SGG+ GV P RTDPCMARSVSVHGCSQMQ QSS+PA+ EKFD FKDAGTNVSPAVSRRDMATQMSPEGSSCS
Sbjct:  336 LFEGGNSGSFMAASPFSAAVSVSAAADGLTAGSGGSCGVPPTRTDPCMARSVSVHGCSQMQSQSSLPAQGEKFDGFKDAGTNVSPAVSRRDMATQMSPEGSSCS 439          
BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1J7IAP4|A0A1J7IAP4_LUPAN (Remorin_C domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_08226 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.803e-36
Identity = 72/104 (69.23%), Postives = 80/104 (76.92%), Query Frame = 0
Query:   12 GHYFDGGG---FMSASPFSAAVNASSVGFTNSSGGNGGVLPARTDPCMARSVSVHGCSQMQGQSSVPAREEKFDSFKDAGTNVSPAVSRRDMATQMSPEGSSCS 112
            G  F+GG    FM+ASPFSA V  S+ G T  S G G VLP R DPCM+RSVS HGCS M  QSS+PA++EKFD FKDA TNVSPAVSRRDMATQMSP+GSSCS
Sbjct:  270 GPLFEGGNAGNFMAASPFSAGV-ISADGLTVGSSGRGRVLPMRADPCMSRSVSAHGCSDMHSQSSMPAQDEKFDDFKDADTNVSPAVSRRDMATQMSPDGSSCS 372          
BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A5NGF7|A0A6A5NGF7_LUPAL (Remorin_C domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00046072 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 7.592e-36
Identity = 73/104 (70.19%), Postives = 83/104 (79.81%), Query Frame = 0
Query:   12 GHYFDGGG---FMSASPFSAAVNASSVGFTNSSGGNGGVLPARTDPCMARSVSVHGCSQMQGQSSVPAREEKFDSFKDAGTNVSPAVSRRDMATQMSPEGSSCS 112
            G  F+GG    FM AS FSA V  ++ G +  SGG+GGV+P RTDPCMARSVSVHGCS MQ QSS+PA+E+KFD FKDAGTNVS AVS +DMATQMSPEGSSCS
Sbjct:  280 GPMFEGGNAGNFMEASTFSAGV-ITADGLSIGSGGHGGVVPMRTDPCMARSVSVHGCSAMQSQSSMPAQEQKFDGFKDAGTNVSAAVSMKDMATQMSPEGSSCS 382          
BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. Araport11
Match: AT1G45207.3 (| Remorin family protein | Chr1:17130703-17133548 REVERSE LENGTH=549 | 201606)

HSP 1 Score: 82.0333 bits (201), Expect = 2.722e-19
Identity = 48/92 (52.17%), Postives = 59/92 (64.13%), Query Frame = 0
Query:   18 GGFMSASPFSAAVNASSVGFTNSSGGNGGVLPARTDPCMARSVSVHGCSQMQGQSSVPAREEKFDSFKDAGTNVSPAVSRRDMATQMSPEGS 109
            GG  ++SPFSA V   +V   +S G      P R DP MARSVS+HGCS+    SS   +++  +S KDA T+   AVSRRDMATQMSPEGS
Sbjct:  292 GGLTASSPFSAGVLPETV---SSRGSTTAAFPQRIDPSMARSVSIHGCSETLASSS---QDDIHESMKDAATDAQ-AVSRRDMATQMSPEGS 376          
BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. Araport11
Match: AT1G45207.2 (| Remorin family protein | Chr1:17130703-17133548 REVERSE LENGTH=555 | 201606)

HSP 1 Score: 82.0333 bits (201), Expect = 2.893e-19
Identity = 48/92 (52.17%), Postives = 59/92 (64.13%), Query Frame = 0
Query:   18 GGFMSASPFSAAVNASSVGFTNSSGGNGGVLPARTDPCMARSVSVHGCSQMQGQSSVPAREEKFDSFKDAGTNVSPAVSRRDMATQMSPEGS 109
            GG  ++SPFSA V   +V   +S G      P R DP MARSVS+HGCS+    SS   +++  +S KDA T+   AVSRRDMATQMSPEGS
Sbjct:  293 GGLTASSPFSAGVLPETV---SSRGSTTAAFPQRIDPSMARSVSIHGCSETLASSS---QDDIHESMKDAATDAQ-AVSRRDMATQMSPEGS 377          
The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2Y450|A0A1S2Y450_CICAR2.876e-5489.11uncharacterized protein LOC101504376 isoform X1 OS... [more]
tr|A0A2Z6PAG3|A0A2Z6PAG3_TRISU2.309e-4788.24Remorin_C domain-containing protein OS=Trifolium s... [more]
tr|A0A072VDZ7|A0A072VDZ7_MEDTR7.354e-4788.35Carboxy-terminal region remorin OS=Medicago trunca... [more]
tr|G7I3I9|G7I3I9_MEDTR2.213e-4688.35Carboxy-terminal region remorin OS=Medicago trunca... [more]
tr|A0A1S3E4W0|A0A1S3E4W0_CICAR3.114e-4682.18uncharacterized protein LOC101504376 isoform X2 OS... [more]
tr|V7CTZ3|V7CTZ3_PHAVU2.149e-3775.96Remorin_C domain-containing protein OS=Phaseolus v... [more]
tr|A0A4D6MET2|A0A4D6MET2_VIGUN5.509e-3775.00Remorin OS=Vigna unguiculata OX=3917 GN=DEO72_LG7g... [more]
tr|A0A371GSV3|A0A371GSV3_MUCPR5.974e-3775.96Remorin 4.1 (Fragment) OS=Mucuna pruriens OX=15765... [more]
tr|A0A1J7IAP4|A0A1J7IAP4_LUPAN6.803e-3669.23Remorin_C domain-containing protein OS=Lupinus ang... [more]
tr|A0A6A5NGF7|A0A6A5NGF7_LUPAL7.592e-3670.19Remorin_C domain-containing protein OS=Lupinus alb... [more]
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BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Tiffany.R1.2g157920.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G45207.32.722e-1952.17| Remorin family protein | Chr1:17130703-17133548 ... [more]
AT1G45207.22.893e-1952.17| Remorin family protein | Chr1:17130703-17133548 ... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..113

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Tiffany.R1.2g157920.1_tif_v1 ID=Vfaba.Tiffany.R1.2g157920.1_tif_v1; Name=Vfaba.Tiffany.R1.2g157920.1; organism=Vicia faba; type=mRNA; length=342bp
ATGCAGATGGAATCGATGAAAGCGAGGTTGAGAGGTCATTATTTTGATGG
AGGGGGTTTTATGTCAGCTTCACCTTTTTCTGCTGCTGTTAATGCTTCAT
CTGTTGGGTTTACAAATAGTTCTGGGGGCAATGGTGGAGTGCTTCCTGCA
CGGACGGATCCTTGTATGGCTCGCTCAGTTAGTGTACATGGCTGCTCTCA
GATGCAGGGCCAGTCGTCAGTTCCTGCCCGAGAGGAAAAGTTCGATAGTT
TCAAGGATGCAGGCACCAATGTATCTCCTGCTGTTTCAAGGAGGGACATG
GCTACCCAGATGAGCCCAGAGGGAAGTTCATGCTCCCAATAG
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protein sequence of Vfaba.Tiffany.R1.2g157920.1_tif_v1

>Vfaba.Tiffany.R1.2g157920.1_tif_v1 ID=Vfaba.Tiffany.R1.2g157920.1_tif_v1; Name=Vfaba.Tiffany.R1.2g157920.1_tif_v1; organism=Vicia faba; type=polypeptide; length=113bp
MQMESMKARLRGHYFDGGGFMSASPFSAAVNASSVGFTNSSGGNGGVLPA
RTDPCMARSVSVHGCSQMQGQSSVPAREEKFDSFKDAGTNVSPAVSRRDM
ATQMSPEGSSCSQ
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mRNA from alignment at chr2:1248834684..1248835992-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Tiffany.R1.2g157920.1_tif_v1 ID=Vfaba.Tiffany.R1.2g157920.1_tif_v1; Name=Vfaba.Tiffany.R1.2g157920.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1248834684..1248835992- (Vicia faba
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