Vfaba.Tiffany.R1.5g133960.1

Transcript Overview
NameVfaba.Tiffany.R1.5g133960.1
Unique NameVfaba.Tiffany.R1.5g133960.1_tif_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length555
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr5chromosomechr5:1168620556..1168621110 +Vicia faba cv. Tiffany genome v1.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.5g133960Vfaba.Tiffany.R1.5g133960_tif_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.5g133960.1_tif_v1-exonVfaba.Tiffany.R1.5g133960.1_tif_v1-exon-chr5_tif_v1:1168620556..1168621110Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.5g133960.1_tif_v1-cdsVfaba.Tiffany.R1.5g133960.1_tif_v1-cds-chr5_tif_v1:1168620556..1168621110Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.5g133960.1_tif_v1Vfaba.Tiffany.R1.5g133960.1_tif_v1Vicia fabapolypeptide
Vfaba.Tiffany.R1.5g133960.1_tif_v1Vfaba.Tiffany.R1.5g133960.1_tif_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6P154|A0A2Z6P154_TRISU (BED-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_89510 PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.222e-47
Identity = 90/160 (56.25%), Postives = 111/160 (69.38%), Query Frame = 0
Query:    1 MTNVSYLPMYATSENTVSTPPPTVSNE-MPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCLVYKRQRTSSSMTSAEEHVGSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDV 159
            M+N  +L    TS++T+S   PTVSN  M P +TKK+KN S++WNHF I  E  +K  C YC+  IKYNNGTS M AHL+RC V KRQRT SSM S  +HV   ++ KFDQEAI+ A VKMFINMEIPFRKVEHESFHEFM+L+           L++D+
Sbjct:    1 MSNDGHLTRSTTSQHTIS---PTVSNSSMLPHNTKKQKNHSKSWNHFTIVDEIGKKVECNYCEKLIKYNNGTSYMCAHLTRCRVCKRQRTPSSMISTYDHV-EHVVPKFDQEAIQSAFVKMFINMEIPFRKVEHESFHEFMTLSKSLPHYIYADFLSKDI 156          
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6PC30|A0A2Z6PC30_TRISU (BED-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_91530 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 8.652e-47
Identity = 83/160 (51.88%), Postives = 106/160 (66.25%), Query Frame = 0
Query:   10 YATSENTVSTPPPTVSNEMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRTSSSMTSAEEHVGSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLW 163
            + TSE  V TP PTVSN   P   + RKNRSEAW+HF +   EE+KA C YC   IK +NGTS+M AH  RC         KRQ++  S T+  E  GS +I KFDQ  +RRA+VKMFI +E+PFR V+HE+ H F++L   +F+I SRTTL+RD+L LW
Sbjct:    7 FETSEQEVCTPMPTVSNTANPLPPRSRKNRSEAWDHFTVELGEEKKAKCYYCGNIIKCDNGTSAMIAHWRRCQNIPTEGANKRQKSGFSSTANME--GSSIISKFDQVELRRALVKMFIALELPFRNVDHEALHNFINLGISQFKIPSRTTLSRDILLLW 164          
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396IDJ9|A0A396IDJ9_MEDTR (Putative transcription factor/ chromatin remodeling BED-type(Zn) family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0052601 PE=4 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.952e-43
Identity = 81/179 (45.25%), Postives = 121/179 (67.60%), Query Frame = 0
Query:    3 NVSYLPMYATSENTVSTPPPTVSNEMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCLVYK-----RQRTSSSMTSAEEHVGSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTKNDFEKLSLSE 176
            ++   P   TSE+ VS+P P  +N +PPP ++ RKNRSEAW+HFI+ SEEE++A C YC  +IK+N GTSSM  H    L ++     +++ S S ++A+    S  I KFDQ  +R+A+ K+FI +E+PFRKV+HE+ H F++L  P+F+I SRTTL+RD+L++W  +    K  LS+
Sbjct:    2 DIRDFPTSETSEHEVSSPTPA-ANPLPPP-SRVRKNRSEAWDHFIVVSEEEKRAKCLYCPKEIKFNGGTSSMRNHW---LKHQEEDSNKKQKSGSCSTADMEGNSSAISKFDQMELRKALGKVFIGLELPFRKVDHEALHHFLNLGIPQFKIPSRTTLSRDILQMWGNEKVRLKTFLSQ 175          
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MF58|A0A2Z6MF58_TRISU (BED-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_176860 PE=4 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.125e-40
Identity = 85/181 (46.96%), Postives = 114/181 (62.98%), Query Frame = 0
Query:   12 TSENTVSTPPPTVSNEMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRT-SSSMTSAEEHV-GSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTKNDFEKLSLSELSKSLSHH 184
            T+E+ +S  P  VS    PP +K R+NRS+AWNHF I S+  +KA C YC + IKY+ GTS+M AH +RC       V KRQ++ S+S  + EE +  SP    FDQEAI+  +VKMFI ++IPF +VEH +F  FMS+  PRF++ S T LA DVL+LW T+        + L K LS H
Sbjct:   12 TAEHMLSAHPLAVS----PPPSKPRRNRSDAWNHFTIDSDITKKAKCNYCGSLIKYDKGTSAMRAHFTRCRDNPMKNVNKRQKSVSASTENVEEQICTSPSTPMFDQEAIQNVVVKMFIALDIPFERVEHAAFQNFMSVVLPRFKVPSSTELAHDVLRLWGTEK-------TRLKKFLSQH 181          
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3PQK2|A0A2K3PQK2_TRIPR (HAT family dimerization domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g014313 PE=4 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.026e-39
Identity = 84/181 (46.41%), Postives = 113/181 (62.43%), Query Frame = 0
Query:   12 TSENTVSTPPPTVSNEMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRT-SSSMTSAEEHV-GSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTKNDFEKLSLSELSKSLSHH 184
            T+E+  S  P  VS    PP +K R+NRS+AWNHF I S+  +KA C YC + I Y+ GTS+M AH +RC       V KRQ++ S+S  + EEH+  SP    FDQEAI+  +VKMF+ ++IPF +VEH +F  FMS+  PRF++ S T LA DVL+LW T+        + L K LS H
Sbjct:   12 TAEHMFSAHPLAVS----PPLSKPRRNRSDAWNHFTIDSDIAKKAKCNYCGSLIGYDKGTSAMRAHFTRCKDNPMKNVNKRQKSVSASTENVEEHICTSPSTPMFDQEAIQNVVVKMFVALDIPFERVEHAAFQNFMSVVLPRFKVPSSTELAHDVLRLWGTEK-------TRLKKFLSQH 181          
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7Y7J2|A0A3Q7Y7J2_CICAR (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 OS=Cicer arietinum OX=3827 GN=LOC105851417 PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.180e-39
Identity = 79/165 (47.88%), Postives = 105/165 (63.64%), Query Frame = 0
Query:   12 TSENTVSTPPPTVSN--EMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRT-SSSMTSAEEHV-GSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTK 166
            T+E+ VSTPPP +SN   + P  T+ R+NRS+AWNHF    +  +KA C YC + IKY+ GTS+M AH +RC       V KRQ++ SSS  + E H+  SP   KFD EAI   MVKMF+ +EIPF +V+H +FH FMS+    F++ S   L  DVL LW T+
Sbjct:   18 TAEHMVSTPPPAISNTTNVLPLRTRSRRNRSDAWNHFTAEPDSTKKAKCNYCGSLIKYDKGTSAMRAHYTRCKDNPKKDVNKRQKSVSSSTENLEGHICTSPTTPKFDSEAIHNEMVKMFVALEIPFERVDHAAFHNFMSVVQQGFKVPSSIALTHDVLSLWETE 182          
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3DWX0|A0A1S3DWX0_CICAR (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 OS=Cicer arietinum OX=3827 GN=LOC105851417 PE=4 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.655e-39
Identity = 79/165 (47.88%), Postives = 105/165 (63.64%), Query Frame = 0
Query:   12 TSENTVSTPPPTVSN--EMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRT-SSSMTSAEEHV-GSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTK 166
            T+E+ VSTPPP +SN   + P  T+ R+NRS+AWNHF    +  +KA C YC + IKY+ GTS+M AH +RC       V KRQ++ SSS  + E H+  SP   KFD EAI   MVKMF+ +EIPF +V+H +FH FMS+    F++ S   L  DVL LW T+
Sbjct:   10 TAEHMVSTPPPAISNTTNVLPLRTRSRRNRSDAWNHFTAEPDSTKKAKCNYCGSLIKYDKGTSAMRAHYTRCKDNPKKDVNKRQKSVSSSTENLEGHICTSPTTPKFDSEAIHNEMVKMFVALEIPFERVDHAAFHNFMSVVQQGFKVPSSIALTHDVLSLWETE 174          
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3K6Q8|A0A2K3K6Q8_TRIPR (AC transposase (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g052725 PE=4 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.178e-38
Identity = 73/159 (45.91%), Postives = 97/159 (61.01%), Query Frame = 0
Query:   15 NTVSTPPPTVSNEMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRTS-SSMTSAEEHVGSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTK 166
            +  S+PP  V N       K RKNRS  W+ F +  + E+ A C +C  K+KYN GTSSM AHL  C         KRQR + SSM    + + SPL+ +FDQE +R  +VKMF+ ME+PF KVEH  F EF++  +P+F + SRTTLARD L LW+ +
Sbjct:    9 DVFSSPPSNVQNRTTMRTPKNRKNRSAVWDDFTLDPDSEKIAICDHCGKKLKYN-GTSSMAAHLKVCKHNPNNESNKRQRNNPSSMNVEGQVISSPLMPRFDQEKLRYLLVKMFVGMELPFNKVEHPDFQEFVNGLNPKFNLISRTTLARDTLLLWDVE 166          
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3P5Y5|A0A2K3P5Y5_TRIPR (HAT family dimerization domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g007267 PE=4 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.080e-34
Identity = 73/156 (46.79%), Postives = 96/156 (61.54%), Query Frame = 0
Query:   18 STPPPTVSNEMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRTSSSMTSAEEHVGS-PLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTK 166
            S+PP  V N       K RKNRS  W+ F +  E E+ A C +C  K+KYN GTSSM +HL  C         KRQR++ S  + E  V S PL+ +FDQE +R  +VKMFI ME+PF KVE+  F EF++  +P+F + SRTTLARD L LW+ +
Sbjct:   12 SSPPTVVQNRTTMRTPKSRKNRSAVWDDFTLDPESEKIAICDHCGKKLKYN-GTSSMTSHLKTCKNNPNNESNKRQRSNPSSVNVEGQVSSSPLVPRFDQENLRYLLVKMFIGMELPFNKVENPYFQEFVNGLNPKFNLISRTTLARDTLLLWDVE 166          
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1B5Z7T9|A0A1B5Z7T9_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_416540 PE=4 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.779e-33
Identity = 74/162 (45.68%), Postives = 98/162 (60.49%), Query Frame = 0
Query:   18 STPPPTVSNEMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRTSSSMTSAEEHVGS-PLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTKNDFEKL 172
            S+PP  V N       K RKNRS  W+ F +  E E+ A C +C  K+KYN GTSSM +HL  C         KRQR++ S  + E  V S PL+ +FDQE +R  +VKMFI ME+PF KVE+  F E+++  +P+F + SRTTLARD L  W+   + EKL
Sbjct:   12 SSPPTVVQNRTTMRTPKSRKNRSAVWDDFTLDPESEKIAICDHCGKKLKYN-GTSSMTSHLKTCKNNPNNESNKRQRSNPSSVNVEGQVSSSPLVPRFDQENLRYLLVKMFIGMELPFNKVENPYFQEYVNGLNPKFNLISRTTLARDTLLFWDV--EMEKL 170          
The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2Z6P154|A0A2Z6P154_TRISU1.222e-4756.25BED-type domain-containing protein OS=Trifolium su... [more]
tr|A0A2Z6PC30|A0A2Z6PC30_TRISU8.652e-4751.88BED-type domain-containing protein OS=Trifolium su... [more]
tr|A0A396IDJ9|A0A396IDJ9_MEDTR4.952e-4345.25Putative transcription factor/ chromatin remodelin... [more]
tr|A0A2Z6MF58|A0A2Z6MF58_TRISU7.125e-4046.96BED-type domain-containing protein OS=Trifolium su... [more]
tr|A0A2K3PQK2|A0A2K3PQK2_TRIPR1.026e-3946.41HAT family dimerization domain-containing protein ... [more]
tr|A0A3Q7Y7J2|A0A3Q7Y7J2_CICAR3.180e-3947.88zinc finger BED domain-containing protein RICESLEE... [more]
tr|A0A1S3DWX0|A0A1S3DWX0_CICAR3.655e-3947.88zinc finger BED domain-containing protein RICESLEE... [more]
tr|A0A2K3K6Q8|A0A2K3K6Q8_TRIPR4.178e-3845.91AC transposase (Fragment) OS=Trifolium pratense OX... [more]
tr|A0A2K3P5Y5|A0A2K3P5Y5_TRIPR2.080e-3446.79HAT family dimerization domain-containing protein ... [more]
tr|A0A1B5Z7T9|A0A1B5Z7T9_TRISU1.779e-3345.68Uncharacterized protein OS=Trifolium subterraneum ... [more]
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BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003656Zinc finger, BED-typePFAMPF02892zf-BEDcoord: 40..81
e-value: 7.6E-11
score: 41.9
IPR003656Zinc finger, BED-typePROSITEPS50808ZF_BEDcoord: 37..91
score: 10.314263
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..41
NoneNo IPR availablePANTHERPTHR34396OS03G0264950 PROTEIN-RELATEDcoord: 25..162
NoneNo IPR availableSUPERFAMILY140996Hermes dimerisation domaincoord: 106..166
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 40..85

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Tiffany.R1.5g133960.1_tif_v1 ID=Vfaba.Tiffany.R1.5g133960.1_tif_v1; Name=Vfaba.Tiffany.R1.5g133960.1; organism=Vicia faba; type=mRNA; length=555bp
ATGACTAATGTTAGTTACTTGCCAATGTATGCAACGTCCGAGAATACGGT
TTCAACCCCTCCACCTACCGTCTCTAATGAAATGCCACCTCCTCACACTA
AGAAGCGAAAGAACCGTTCAGAGGCTTGGAATCATTTCATTATATCGTCA
GAAGAAGAACAAAAAGCTTCGTGCAAGTACTGTGACACAAAAATTAAGTA
TAATAATGGAACTAGTTCTATGCATGCTCATTTATCAAGATGCCTTGTTT
ACAAGAGACAAAGGACATCATCTTCTATGACAAGTGCTGAAGAACATGTT
GGCTCTCCTTTAATTGTCAAGTTTGACCAAGAAGCTATTCGAAGAGCAAT
GGTTAAGATGTTCATTAACATGGAGATTCCTTTTCGGAAGGTTGAACATG
AGTCTTTTCATGAATTTATGAGTCTCGCTTCACCAAGATTTCAGATTTGT
TCGCGCACAACATTGGCACGCGATGTCTTGAAACTATGGAACACAAAAAA
TGATTTTGAAAAACTTTCTCTCTCTGAATTGTCAAAGAGTTTGTCTCACC
ACTGA
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protein sequence of Vfaba.Tiffany.R1.5g133960.1_tif_v1

>Vfaba.Tiffany.R1.5g133960.1_tif_v1 ID=Vfaba.Tiffany.R1.5g133960.1_tif_v1; Name=Vfaba.Tiffany.R1.5g133960.1_tif_v1; organism=Vicia faba; type=polypeptide; length=184bp
MTNVSYLPMYATSENTVSTPPPTVSNEMPPPHTKKRKNRSEAWNHFIISS
EEEQKASCKYCDTKIKYNNGTSSMHAHLSRCLVYKRQRTSSSMTSAEEHV
GSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQIC
SRTTLARDVLKLWNTKNDFEKLSLSELSKSLSHH
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mRNA from alignment at chr5:1168620556..1168621110+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Tiffany.R1.5g133960.1_tif_v1 ID=Vfaba.Tiffany.R1.5g133960.1_tif_v1; Name=Vfaba.Tiffany.R1.5g133960.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1168620556..1168621110+ (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003656Znf_BED
IPR036236Znf_C2H2_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding