Vfaba.Tiffany.R1.5g133960.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6P154|A0A2Z6P154_TRISU (BED-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_89510 PE=4 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.222e-47 Identity = 90/160 (56.25%), Postives = 111/160 (69.38%), Query Frame = 0 Query: 1 MTNVSYLPMYATSENTVSTPPPTVSNE-MPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCLVYKRQRTSSSMTSAEEHVGSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDV 159 M+N +L TS++T+S PTVSN M P +TKK+KN S++WNHF I E +K C YC+ IKYNNGTS M AHL+RC V KRQRT SSM S +HV ++ KFDQEAI+ A VKMFINMEIPFRKVEHESFHEFM+L+ L++D+ Sbjct: 1 MSNDGHLTRSTTSQHTIS---PTVSNSSMLPHNTKKQKNHSKSWNHFTIVDEIGKKVECNYCEKLIKYNNGTSYMCAHLTRCRVCKRQRTPSSMISTYDHV-EHVVPKFDQEAIQSAFVKMFINMEIPFRKVEHESFHEFMTLSKSLPHYIYADFLSKDI 156
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6PC30|A0A2Z6PC30_TRISU (BED-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_91530 PE=4 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 8.652e-47 Identity = 83/160 (51.88%), Postives = 106/160 (66.25%), Query Frame = 0 Query: 10 YATSENTVSTPPPTVSNEMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRTSSSMTSAEEHVGSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLW 163 + TSE V TP PTVSN P + RKNRSEAW+HF + EE+KA C YC IK +NGTS+M AH RC KRQ++ S T+ E GS +I KFDQ +RRA+VKMFI +E+PFR V+HE+ H F++L +F+I SRTTL+RD+L LW Sbjct: 7 FETSEQEVCTPMPTVSNTANPLPPRSRKNRSEAWDHFTVELGEEKKAKCYYCGNIIKCDNGTSAMIAHWRRCQNIPTEGANKRQKSGFSSTANME--GSSIISKFDQVELRRALVKMFIALELPFRNVDHEALHNFINLGISQFKIPSRTTLSRDILLLW 164
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396IDJ9|A0A396IDJ9_MEDTR (Putative transcription factor/ chromatin remodeling BED-type(Zn) family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0052601 PE=4 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.952e-43 Identity = 81/179 (45.25%), Postives = 121/179 (67.60%), Query Frame = 0 Query: 3 NVSYLPMYATSENTVSTPPPTVSNEMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCLVYK-----RQRTSSSMTSAEEHVGSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTKNDFEKLSLSE 176 ++ P TSE+ VS+P P +N +PPP ++ RKNRSEAW+HFI+ SEEE++A C YC +IK+N GTSSM H L ++ +++ S S ++A+ S I KFDQ +R+A+ K+FI +E+PFRKV+HE+ H F++L P+F+I SRTTL+RD+L++W + K LS+ Sbjct: 2 DIRDFPTSETSEHEVSSPTPA-ANPLPPP-SRVRKNRSEAWDHFIVVSEEEKRAKCLYCPKEIKFNGGTSSMRNHW---LKHQEEDSNKKQKSGSCSTADMEGNSSAISKFDQMELRKALGKVFIGLELPFRKVDHEALHHFLNLGIPQFKIPSRTTLSRDILQMWGNEKVRLKTFLSQ 175
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MF58|A0A2Z6MF58_TRISU (BED-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_176860 PE=4 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 7.125e-40 Identity = 85/181 (46.96%), Postives = 114/181 (62.98%), Query Frame = 0 Query: 12 TSENTVSTPPPTVSNEMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRT-SSSMTSAEEHV-GSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTKNDFEKLSLSELSKSLSHH 184 T+E+ +S P VS PP +K R+NRS+AWNHF I S+ +KA C YC + IKY+ GTS+M AH +RC V KRQ++ S+S + EE + SP FDQEAI+ +VKMFI ++IPF +VEH +F FMS+ PRF++ S T LA DVL+LW T+ + L K LS H Sbjct: 12 TAEHMLSAHPLAVS----PPPSKPRRNRSDAWNHFTIDSDITKKAKCNYCGSLIKYDKGTSAMRAHFTRCRDNPMKNVNKRQKSVSASTENVEEQICTSPSTPMFDQEAIQNVVVKMFIALDIPFERVEHAAFQNFMSVVLPRFKVPSSTELAHDVLRLWGTEK-------TRLKKFLSQH 181
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3PQK2|A0A2K3PQK2_TRIPR (HAT family dimerization domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g014313 PE=4 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.026e-39 Identity = 84/181 (46.41%), Postives = 113/181 (62.43%), Query Frame = 0 Query: 12 TSENTVSTPPPTVSNEMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRT-SSSMTSAEEHV-GSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTKNDFEKLSLSELSKSLSHH 184 T+E+ S P VS PP +K R+NRS+AWNHF I S+ +KA C YC + I Y+ GTS+M AH +RC V KRQ++ S+S + EEH+ SP FDQEAI+ +VKMF+ ++IPF +VEH +F FMS+ PRF++ S T LA DVL+LW T+ + L K LS H Sbjct: 12 TAEHMFSAHPLAVS----PPLSKPRRNRSDAWNHFTIDSDIAKKAKCNYCGSLIGYDKGTSAMRAHFTRCKDNPMKNVNKRQKSVSASTENVEEHICTSPSTPMFDQEAIQNVVVKMFVALDIPFERVEHAAFQNFMSVVLPRFKVPSSTELAHDVLRLWGTEK-------TRLKKFLSQH 181
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7Y7J2|A0A3Q7Y7J2_CICAR (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 OS=Cicer arietinum OX=3827 GN=LOC105851417 PE=4 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.180e-39 Identity = 79/165 (47.88%), Postives = 105/165 (63.64%), Query Frame = 0 Query: 12 TSENTVSTPPPTVSN--EMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRT-SSSMTSAEEHV-GSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTK 166 T+E+ VSTPPP +SN + P T+ R+NRS+AWNHF + +KA C YC + IKY+ GTS+M AH +RC V KRQ++ SSS + E H+ SP KFD EAI MVKMF+ +EIPF +V+H +FH FMS+ F++ S L DVL LW T+ Sbjct: 18 TAEHMVSTPPPAISNTTNVLPLRTRSRRNRSDAWNHFTAEPDSTKKAKCNYCGSLIKYDKGTSAMRAHYTRCKDNPKKDVNKRQKSVSSSTENLEGHICTSPTTPKFDSEAIHNEMVKMFVALEIPFERVDHAAFHNFMSVVQQGFKVPSSIALTHDVLSLWETE 182
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3DWX0|A0A1S3DWX0_CICAR (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 OS=Cicer arietinum OX=3827 GN=LOC105851417 PE=4 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 3.655e-39 Identity = 79/165 (47.88%), Postives = 105/165 (63.64%), Query Frame = 0 Query: 12 TSENTVSTPPPTVSN--EMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRT-SSSMTSAEEHV-GSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTK 166 T+E+ VSTPPP +SN + P T+ R+NRS+AWNHF + +KA C YC + IKY+ GTS+M AH +RC V KRQ++ SSS + E H+ SP KFD EAI MVKMF+ +EIPF +V+H +FH FMS+ F++ S L DVL LW T+ Sbjct: 10 TAEHMVSTPPPAISNTTNVLPLRTRSRRNRSDAWNHFTAEPDSTKKAKCNYCGSLIKYDKGTSAMRAHYTRCKDNPKKDVNKRQKSVSSSTENLEGHICTSPTTPKFDSEAIHNEMVKMFVALEIPFERVDHAAFHNFMSVVQQGFKVPSSIALTHDVLSLWETE 174
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3K6Q8|A0A2K3K6Q8_TRIPR (AC transposase (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g052725 PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 4.178e-38 Identity = 73/159 (45.91%), Postives = 97/159 (61.01%), Query Frame = 0 Query: 15 NTVSTPPPTVSNEMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRTS-SSMTSAEEHVGSPLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTK 166 + S+PP V N K RKNRS W+ F + + E+ A C +C K+KYN GTSSM AHL C KRQR + SSM + + SPL+ +FDQE +R +VKMF+ ME+PF KVEH F EF++ +P+F + SRTTLARD L LW+ + Sbjct: 9 DVFSSPPSNVQNRTTMRTPKNRKNRSAVWDDFTLDPDSEKIAICDHCGKKLKYN-GTSSMAAHLKVCKHNPNNESNKRQRNNPSSMNVEGQVISSPLMPRFDQEKLRYLLVKMFVGMELPFNKVEHPDFQEFVNGLNPKFNLISRTTLARDTLLLWDVE 166
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3P5Y5|A0A2K3P5Y5_TRIPR (HAT family dimerization domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g007267 PE=4 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 2.080e-34 Identity = 73/156 (46.79%), Postives = 96/156 (61.54%), Query Frame = 0 Query: 18 STPPPTVSNEMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRTSSSMTSAEEHVGS-PLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTK 166 S+PP V N K RKNRS W+ F + E E+ A C +C K+KYN GTSSM +HL C KRQR++ S + E V S PL+ +FDQE +R +VKMFI ME+PF KVE+ F EF++ +P+F + SRTTLARD L LW+ + Sbjct: 12 SSPPTVVQNRTTMRTPKSRKNRSAVWDDFTLDPESEKIAICDHCGKKLKYN-GTSSMTSHLKTCKNNPNNESNKRQRSNPSSVNVEGQVSSSPLVPRFDQENLRYLLVKMFIGMELPFNKVENPYFQEFVNGLNPKFNLISRTTLARDTLLLWDVE 166
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1B5Z7T9|A0A1B5Z7T9_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_416540 PE=4 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.779e-33 Identity = 74/162 (45.68%), Postives = 98/162 (60.49%), Query Frame = 0 Query: 18 STPPPTVSNEMPPPHTKKRKNRSEAWNHFIISSEEEQKASCKYCDTKIKYNNGTSSMHAHLSRCL------VYKRQRTSSSMTSAEEHVGS-PLIVKFDQEAIRRAMVKMFINMEIPFRKVEHESFHEFMSLASPRFQICSRTTLARDVLKLWNTKNDFEKL 172 S+PP V N K RKNRS W+ F + E E+ A C +C K+KYN GTSSM +HL C KRQR++ S + E V S PL+ +FDQE +R +VKMFI ME+PF KVE+ F E+++ +P+F + SRTTLARD L W+ + EKL Sbjct: 12 SSPPTVVQNRTTMRTPKSRKNRSAVWDDFTLDPESEKIAICDHCGKKLKYN-GTSSMTSHLKTCKNNPNNESNKRQRSNPSSVNVEGQVSSSPLVPRFDQENLRYLLVKMFIGMELPFNKVENPYFQEYVNGLNPKFNLISRTTLARDTLLFWDV--EMEKL 170 The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Tiffany.R1.5g133960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11) Total hits: 0
InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Tiffany.R1.5g133960.1_tif_v1 ID=Vfaba.Tiffany.R1.5g133960.1_tif_v1; Name=Vfaba.Tiffany.R1.5g133960.1; organism=Vicia faba; type=mRNA; length=555bpback to top protein sequence of Vfaba.Tiffany.R1.5g133960.1_tif_v1 >Vfaba.Tiffany.R1.5g133960.1_tif_v1 ID=Vfaba.Tiffany.R1.5g133960.1_tif_v1; Name=Vfaba.Tiffany.R1.5g133960.1_tif_v1; organism=Vicia faba; type=polypeptide; length=184bpback to top mRNA from alignment at chr5:1168620556..1168621110+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Tiffany.R1.5g133960.1_tif_v1 ID=Vfaba.Tiffany.R1.5g133960.1_tif_v1; Name=Vfaba.Tiffany.R1.5g133960.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1168620556..1168621110+ (Vicia fababack to top |