Vigst.02G037400.01
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vigst.02G037400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3RAS0|A0A0S3RAS0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G044800 PE=4 SV=1) HSP 1 Score: 425.246 bits (1092), Expect = 2.406e-150 Identity = 207/209 (99.04%), Postives = 208/209 (99.52%), Query Frame = 0 Query: 1 MALPSLLPKTAPHLLSLTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAASSAGDSLRSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL 209 MALPSLLPKTAPHLL LTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAASSAGDSLRSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQ+VDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL Sbjct: 1 MALPSLLPKTAPHLLPLTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAASSAGDSLRSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQVVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL 209
BLAST of Vigst.02G037400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T0KMZ2|A0A8T0KMZ2_PHAAN (Protein DCL-like protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0095880 PE=4 SV=1) HSP 1 Score: 425.246 bits (1092), Expect = 2.406e-150 Identity = 207/209 (99.04%), Postives = 208/209 (99.52%), Query Frame = 0 Query: 1 MALPSLLPKTAPHLLSLTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAASSAGDSLRSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL 209 MALPSLLPKTAPHLL LTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAASSAGDSLRSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQ+VDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL Sbjct: 1 MALPSLLPKTAPHLLPLTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAASSAGDSLRSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQVVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL 209
BLAST of Vigst.02G037400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3U8Z7|A0A1S3U8Z7_VIGRR (Protein DCL homolog, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106762865 PE=4 SV=1) HSP 1 Score: 422.55 bits (1085), Expect = 3.171e-149 Identity = 205/209 (98.09%), Postives = 206/209 (98.56%), Query Frame = 0 Query: 1 MALPSLLPKTAPHLLSLTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAASSAGDSLRSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL 209 MALPSLLPKTAPHLL TNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAASSAGDS RSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQ+VDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL Sbjct: 1 MALPSLLPKTAPHLLPFTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAASSAGDSFRSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQVVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL 209
BLAST of Vigst.02G037400.01 vs. ExPASy TrEMBL (2024)
Match: tr|V7AWU9|V7AWU9_PHAVU (Protein DCL OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G065400g PE=4 SV=1) HSP 1 Score: 380.563 bits (976), Expect = 1.870e-132 Identity = 194/211 (91.94%), Postives = 198/211 (93.84%), Query Frame = 0 Query: 1 MALPSLLPKTAPHLLSLTNPFSSSSSPST--LILPFRFHFFSHLPPLSLLKAASSAGDSLRSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL 209 MALPSLLPKTAPHLLSLTNP+SSSSS S LILPFRFH HLPPLS LKAASS GDSLRSKPL+S RRGILEEHGS A EEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPE E+KIGCGVDYITIGYHPDFERSRCLFIVRQDGQ+VDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL Sbjct: 7 MALPSLLPKTAPHLLSLTNPYSSSSSSSPSLLILPFRFHVSPHLPPLSPLKAASSDGDSLRSKPLVSHRRGILEEHGSHASEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPESEKKIGCGVDYITIGYHPDFERSRCLFIVRQDGQVVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL 217
BLAST of Vigst.02G037400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86SV51|A0AA86SV51_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS25452 PE=4 SV=1) HSP 1 Score: 362.844 bits (930), Expect = 1.433e-125 Identity = 189/209 (90.43%), Postives = 198/209 (94.74%), Query Frame = 0 Query: 1 MALPSLLPKTAPHLLSLTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAASSAGDSLRSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL 209 MA+PSLLPKTAPHLLSLTNP+SS SSPS ILPFRFHF HLPPLS LKAASSAGD+LRSKPL+SQ RGIL+EHGS FEE+DDDK IDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEK IIEKLLPFHPEFE+KIGCG+DYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYAD+FILRHFRKKSRNL Sbjct: 7 MAMPSLLPKTAPHLLSLTNPYSSFSSPSISILPFRFHFLPHLPPLSPLKAASSAGDNLRSKPLVSQGRGILQEHGSHTFEEEDDDKSIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKIIIEKLLPFHPEFEKKIGCGIDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADSFILRHFRKKSRNL 215
BLAST of Vigst.02G037400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151TDE6|A0A151TDE6_CAJCA (Protein DCL OS=Cajanus cajan OX=3821 GN=KK1_019698 PE=4 SV=1) HSP 1 Score: 311.227 bits (796), Expect = 2.581e-105 Identity = 156/206 (75.73%), Postives = 172/206 (83.50%), Query Frame = 0 Query: 6 LLPKTAPHLLSLTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAASSAGDSLRSKPLMSQRRGILEEHGSQAFEE--DDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL 209 LLPKTAPHLL NP+S LILPFRFH F PPLS L+A SS D+LR+KPL+S AFE+ DDDDKW+DWEDQILEDTVPLVGFVRM+LHSGQYE+GDRLS EHEKTI+EKLLPFHPE ++KIGCGVDYITIGYHPDFERSRCLFIVRQDG++VDFSYWKCIKGLIRKNYPLYAD+FILRHFRKKSRN+ Sbjct: 12 LLPKTAPHLLPFANPYSP------LILPFRFHSFPR-PPLSALRAISSDADNLRAKPLVSH-----------AFEDNNDDDDKWVDWEDQILEDTVPLVGFVRMLLHSGQYENGDRLSPEHEKTILEKLLPFHPESQKKIGCGVDYITIGYHPDFERSRCLFIVRQDGEMVDFSYWKCIKGLIRKNYPLYADSFILRHFRKKSRNM 199
BLAST of Vigst.02G037400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445KVP9|A0A445KVP9_GLYSO (Protein DCL, chloroplastic isoform A OS=Glycine soja OX=3848 GN=D0Y65_008704 PE=4 SV=1) HSP 1 Score: 311.227 bits (796), Expect = 3.475e-105 Identity = 173/211 (81.99%), Postives = 187/211 (88.63%), Query Frame = 0 Query: 1 MALPSLLPKTAPHLLSLTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAASSAGDSLRSKPLMSQR--RGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL 209 MAL SLLPKTAPH+LSLTNP S+S+P ILPF FH H P LS LKA+SS GD LR KPL+SQ +GILEEH AFE+DDDDKW+DWEDQILEDTVPLVGFVRMILHSGQY++GDRLS EHEKTIIEKLLPFHPEFE+KIG GVDYITIGYHPDFERSRCLFIVR+DG+LVDFSYWKCIKGLIRKNYPLYAD+FILRHFRKKSRNL Sbjct: 9 MALASLLPKTAPHVLSLTNP--SASTP--FILPFSFHCLPHPPLLSALKASSSGGDDLRGKPLLSQGIGKGILEEH---AFEDDDDDKWVDWEDQILEDTVPLVGFVRMILHSGQYDNGDRLSAEHEKTIIEKLLPFHPEFEKKIGSGVDYITIGYHPDFERSRCLFIVREDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRKKSRNL 212
BLAST of Vigst.02G037400.01 vs. ExPASy TrEMBL (2024)
Match: tr|C6T0K2|C6T0K2_SOYBN (Protein DCL, chloroplastic OS=Glycine max OX=3847 GN=100306718 PE=2 SV=1) HSP 1 Score: 311.227 bits (796), Expect = 3.475e-105 Identity = 173/211 (81.99%), Postives = 187/211 (88.63%), Query Frame = 0 Query: 1 MALPSLLPKTAPHLLSLTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAASSAGDSLRSKPLMSQR--RGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL 209 MAL SLLPKTAPH+LSLTNP S+S+P ILPF FH H P LS LKA+SS GD LR KPL+SQ +GILEEH AFE+DDDDKW+DWEDQILEDTVPLVGFVRMILHSGQY++GDRLS EHEKTIIEKLLPFHPEFE+KIG GVDYITIGYHPDFERSRCLFIVR+DG+LVDFSYWKCIKGLIRKNYPLYAD+FILRHFRKKSRNL Sbjct: 9 MALASLLPKTAPHVLSLTNP--SASTP--FILPFSFHCLPHPPLLSALKASSSGGDDLRGKPLLSQGIGKGILEEH---AFEDDDDDKWVDWEDQILEDTVPLVGFVRMILHSGQYDNGDRLSAEHEKTIIEKLLPFHPEFEKKIGSGVDYITIGYHPDFERSRCLFIVREDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRKKSRNL 212
BLAST of Vigst.02G037400.01 vs. ExPASy TrEMBL (2024)
Match: tr|Q00M77|Q00M77_SOYBN (Defective chloroplast and leaves protein OS=Glycine max OX=3847 PE=4 SV=1) HSP 1 Score: 310.071 bits (793), Expect = 8.506e-105 Identity = 173/211 (81.99%), Postives = 187/211 (88.63%), Query Frame = 0 Query: 1 MALPSLLPKTAPHLLSLTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAASSAGDSLRSKPLMSQR--RGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL 209 MAL SLLPKTAPH+LSLTNP S+S+P ILPF FH H P LS LKA+SS GD LR KPL+SQ +GILEEH AFE+DDDDKW+DWEDQILEDTVPLVGFVRMILHSGQY++GDRLS EHEKTIIEKLLPFHPEFE+KIG GVDYITIGYHPDFERSRCLFIVR+DG+LVDFSYWKCIKGLIRKNYPLYAD+FILRHFRKKSRNL Sbjct: 1 MALASLLPKTAPHVLSLTNP--SASTP--FILPFSFHCLPHPPLLSALKASSSGGDDLRGKPLLSQGIGKGILEEH---AFEDDDDDKWVDWEDQILEDTVPLVGFVRMILHSGQYDNGDRLSAEHEKTIIEKLLPFHPEFEKKIGSGVDYITIGYHPDFERSRCLFIVREDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRKKSRNL 204
BLAST of Vigst.02G037400.01 vs. ExPASy TrEMBL (2024)
Match: tr|C6T490|C6T490_SOYBN (Protein DCL, chloroplastic OS=Glycine max OX=3847 GN=100527410 PE=2 SV=1) HSP 1 Score: 299.286 bits (765), Expect = 1.764e-100 Identity = 163/212 (76.89%), Postives = 177/212 (83.49%), Query Frame = 0 Query: 1 MALPSLLPKTAPHLLSLTNPFSSSSSPSTLILPFRFHFFSH-LP-PLSLLKAA-SSAGDSLRSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRNL 209 MAL SLLPKTAPH LSLTNP SSS+P LILPF F H LP PLS LKA S GD+LR KPL+ Q + ++DDD+KW+DWED ILEDTVPLVGFVRMILHSGQY++GD+LS EHEKTIIEKLLPFHPEFE+KIG GVDYITIGYHPDFERSRCLFIVRQDG+LVDFSYWKCIKGLIRKNYPLYAD+FILRHFRKKSRNL Sbjct: 7 MALLSLLPKTAPHALSLTNP--SSSTP--LILPFSFQCLPHPLPSPLSSLKATFSDGGDNLRGKPLVPQ--------AFEEEDDDDDNKWVDWEDLILEDTVPLVGFVRMILHSGQYDNGDKLSPEHEKTIIEKLLPFHPEFEKKIGSGVDYITIGYHPDFERSRCLFIVRQDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRKKSRNL 206
BLAST of Vigst.02G037400.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q42463|DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 2.207e-73 Identity = 99/126 (78.57%), Postives = 116/126 (92.06%), Query Frame = 0 Query: 83 DDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRN 208 D + W+DWEDQILEDTVPLVGFVRMILHSG+Y GDRLS +H++TI+++LLP+HPE ++KIG GVDYIT+GYHPDFE SRCLFIVR+DG+ VDFSYWKCIKGLIRKNYPLYAD+FILRHFRK+ RN Sbjct: 98 DGEGWVDWEDQILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRKRRRN 223
BLAST of Vigst.02G037400.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9C642|DCL_ARATH (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 1.077e-72 Identity = 118/216 (54.63%), Postives = 149/216 (68.98%), Query Frame = 0 Query: 2 ALPSLLPKTAPHLLSLTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAAS---------SAGDSLRSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRN 208 ++PS P +P+ T FS SSSP L P R S P + L+ S S G L +P ++ EE + + D+ ++DWED+ILE TVPLVGFVRMILHSG+Y + DRLS EHE+TIIE LLP+HPE E+KIGCG+DYI +G+HPDFE SRC+FIVR+DG++VDFSYWKCIKGLI+K YPLYAD+FILRHFRK+ +N Sbjct: 5 SIPSSSPVASPYFRCRTYIFSFSSSPLCLYFP-RGDSTSLRPRVRALRTESDGAKIGNSESYGSELLRRPRIASEESSEEEEEEEEENSEGDE-FVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRRQN 218
BLAST of Vigst.02G037400.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q5D869|NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.553e-23 Identity = 48/120 (40.00%), Postives = 72/120 (60.00%), Query Frame = 0 Query: 85 DKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRK 204 D + E ++L D P++ +R I+H Y GD +S++ + ++EK+L FHP+ E K+G GVD+IT+ H F SRC F+V DG DFSY K + + K YP A+ FI ++F K Sbjct: 1730 DSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849
BLAST of Vigst.02G037400.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|P85936|DCL_PSEMZ (Protein DCL, chloroplastic (Fragment) OS=Pseudotsuga menziesii OX=3357 PE=1 SV=1) HSP 1 Score: 49.6766 bits (117), Expect = 9.231e-8 Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 0 Query: 87 WIDWEDQILEDTVPLVGFVRMI 108 W+DWEDQIL+DTVPLV FVRMI Sbjct: 2 WVDWEDQILQDTVPLVNFVRMI 23
BLAST of Vigst.02G037400.01 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:17169874-17171381 REVERSE LENGTH=219) HSP 1 Score: 222.631 bits (566), Expect = 1.124e-73 Identity = 118/216 (54.63%), Postives = 149/216 (68.98%), Query Frame = 0 Query: 2 ALPSLLPKTAPHLLSLTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAAS---------SAGDSLRSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRN 208 ++PS P +P+ T FS SSSP L P R S P + L+ S S G L +P ++ EE + + D+ ++DWED+ILE TVPLVGFVRMILHSG+Y + DRLS EHE+TIIE LLP+HPE E+KIGCG+DYI +G+HPDFE SRC+FIVR+DG++VDFSYWKCIKGLI+K YPLYAD+FILRHFRK+ +N Sbjct: 5 SIPSSSPVASPYFRCRTYIFSFSSSPLCLYFP-RGDSTSLRPRVRALRTESDGAKIGNSESYGSELLRRPRIASEESSEEEEEEEEENSEGDE-FVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRRQN 218
BLAST of Vigst.02G037400.01 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:17169874-17171381 REVERSE LENGTH=219) HSP 1 Score: 218.779 bits (556), Expect = 3.656e-72 Identity = 117/216 (54.17%), Postives = 148/216 (68.52%), Query Frame = 0 Query: 2 ALPSLLPKTAPHLLSLTNPFSSSSSPSTLILPFRFHFFSHLPPLSLLKAAS---------SAGDSLRSKPLMSQRRGILEEHGSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKSRN 208 ++PS P +P+ T FS SSSP L P R S P + L+ S S G L +P ++ EE + + D+ ++DWED+ILE TVPLVGFVRMILHSG+Y + DRLS EHE+TIIE LLP+HPE E+KIGCG+DYI + +HPDFE SRC+FIVR+DG++VDFSYWKCIKGLI+K YPLYAD+FILRHFRK+ +N Sbjct: 5 SIPSSSPVASPYFRCRTYIFSFSSSPLCLYFP-RGDSTSLRPRVRALRTESDGAKIGNSESYGSELLRRPRIASEESSEEEEEEEEENSEGDE-FVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRRQN 218
BLAST of Vigst.02G037400.01 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:17181138-17182346 REVERSE LENGTH=207) HSP 1 Score: 134.806 bits (338), Expect = 2.142e-39 Identity = 62/132 (46.97%), Postives = 86/132 (65.15%), Query Frame = 0 Query: 75 GSQAFEEDDDDKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRKKS 206 S +E+ D KW + E +IL D P+ + ILHS +Y G+RL E EK ++EKLLP+HP + KIGCG+D+I + HP F SRCLF+VR DG +DFSY KC++ +R YP +A+ FI HF++ S Sbjct: 75 NSWRYEDPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERFIREHFKRAS 206
BLAST of Vigst.02G037400.01 vs. Araport11
Match: | (Symbols: DMS5, NRPD1B, NRPE1, DRD3, ATNRPD1B | DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B | chr2:16715089-16723406 FORWARD LENGTH=1976) HSP 1 Score: 101.293 bits (251), Expect = 1.570e-24 Identity = 48/120 (40.00%), Postives = 72/120 (60.00%), Query Frame = 0 Query: 85 DKWIDWEDQILEDTVPLVGFVRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGYHPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIRKNYPLYADTFILRHFRK 204 D + E ++L D P++ +R I+H Y GD +S++ + ++EK+L FHP+ E K+G GVD+IT+ H F SRC F+V DG DFSY K + + K YP A+ FI ++F K Sbjct: 1730 DSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849
BLAST of Vigst.02G037400.01 vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23359611 REVERSE LENGTH=1145) HSP 1 Score: 49.6766 bits (117), Expect = 6.062e-7 Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 0 Query: 105 VRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGY--HPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIR 187 ++ ILHS YE + L+E E +++ +L HP +KIG GV I + H D S C +VR DG DFSY KC+ G + Sbjct: 1038 LKRILHS--YEINELLNERDEG-LVKMVLQLHPNSVEKIGPGVKGIRVAKSKHGD---SCCFEVVRIDGTFEDFSYHKCVLGATK 1116
BLAST of Vigst.02G037400.01 vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1439) HSP 1 Score: 49.6766 bits (117), Expect = 7.476e-7 Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 0 Query: 105 VRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGY--HPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIR 187 ++ ILHS YE + L+E E +++ +L HP +KIG GV I + H D S C +VR DG DFSY KC+ G + Sbjct: 1332 LKRILHS--YEINELLNERDEG-LVKMVLQLHPNSVEKIGPGVKGIRVAKSKHGD---SCCFEVVRIDGTFEDFSYHKCVLGATK 1410
BLAST of Vigst.02G037400.01 vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1453) HSP 1 Score: 49.6766 bits (117), Expect = 7.694e-7 Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 0 Query: 105 VRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGY--HPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIR 187 ++ ILHS YE + L+E E +++ +L HP +KIG GV I + H D S C +VR DG DFSY KC+ G + Sbjct: 1346 LKRILHS--YEINELLNERDEG-LVKMVLQLHPNSVEKIGPGVKGIRVAKSKHGD---SCCFEVVRIDGTFEDFSYHKCVLGATK 1424
BLAST of Vigst.02G037400.01 vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1453) HSP 1 Score: 49.6766 bits (117), Expect = 7.694e-7 Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 0 Query: 105 VRMILHSGQYESGDRLSEEHEKTIIEKLLPFHPEFEQKIGCGVDYITIGY--HPDFERSRCLFIVRQDGQLVDFSYWKCIKGLIR 187 ++ ILHS YE + L+E E +++ +L HP +KIG GV I + H D S C +VR DG DFSY KC+ G + Sbjct: 1346 LKRILHS--YEINELLNERDEG-LVKMVLQLHPNSVEKIGPGVKGIRVAKSKHGD---SCCFEVVRIDGTFEDFSYHKCVLGATK 1424 The following BLAST results are available for this feature:
BLAST of Vigst.02G037400.01 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vigst.02G037400.01 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt Swissprot) Total hits: 4
BLAST of Vigst.02G037400.01 vs. Araport11
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs arabidopsis Araport11) Total hits: 8
InterPro
Analysis Name: InterProScan Analysis for Vigna stipulacea acc. JP252948 genome v1.0
Date Performed: 2024-08-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >drVigStip.JP252948.2.0.Vigst.02G037400.01 ID=drVigStip.JP252948.2.0.Vigst.02G037400.01; Name=Vigst.02G037400.01; organism=Vigna stipulacea; type=mRNA; length=630bpback to top protein sequence of drVigStip.JP252948.2.0.Vigst.02G037400.01 >drVigStip.JP252948.2.0.Vigst.02G037400.01 ID=drVigStip.JP252948.2.0.Vigst.02G037400.01; Name=drVigStip.JP252948.2.0.Vigst.02G037400.01; organism=Vigna stipulacea; type=polypeptide; length=210bpback to top mRNA from alignment at Chr02:2877864..2882380+ Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>drVigStip.JP252948.2.0.Vigst.02G037400.01 ID=drVigStip.JP252948.2.0.Vigst.02G037400.01; Name=Vigst.02G037400.01; organism=Vigna stipulacea; type=mRNA; length=4517bp; location=Sequence derived from: Chr02:2877864..2882380+ (Vigna stipulaceaback to top Coding sequence (CDS) from alignment at Chr02:2877864..2882380+ >drVigStip.JP252948.2.0.Vigst.02G037400.01 ID=drVigStip.JP252948.2.0.Vigst.02G037400.01; Name=Vigst.02G037400.01; organism=Vigna stipulacea; type=CDS; length=630bp; location=Sequence derived from: Chr02:2877864..2882380+ (Vigna stipulaceaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|