Vigst.04G197600.01

Transcript Overview
NameVigst.04G197600.01
Unique NamedrVigStip.JP252948.2.0.Vigst.04G197600.01
TypemRNA
OrganismVigna stipulacea ()
Sequence length195
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr04chromosomeChr04:32270024..32272234 -Vigna stipulacea acc. JP252948 genome v2.a1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vstvvaR432Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvvaR467Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvvaR492Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstL0175Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvstL309Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvstL328Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvstL397Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL0631Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL0754Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL0758Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL0996Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL1164Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL1257Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL1333Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
pvvstL036Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
carvstL214Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
carvstL336Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
carvstL341Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
carvstL344Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
pvvstL672Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvstL677Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvstL682Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vstvstR252Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvstR258Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstL256Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vstvuR307Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvvstL640Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvstL662Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vstvuR359Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vasvstL365Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL609Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL615Vigna angularis cv. Shumari genome v1.a1Vigna angularis

Orthologs
Gene/TranscriptAssemblySpecies
evm.Ca_v2.0_07535Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
Vigan.04G310200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va03G070800.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_014639947.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun01g143900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.001G162100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigst.04G197600drVigStip.JP252948.2.0.Vigst.04G197600Vigna stipulaceagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
nbis-exon-60566drVigStip.JP252948.2.0.nbis-exon-60566Vigna stipulaceaexon
nbis-exon-60567drVigStip.JP252948.2.0.nbis-exon-60567Vigna stipulaceaexon
nbis-exon-60568drVigStip.JP252948.2.0.nbis-exon-60568Vigna stipulaceaexon
nbis-exon-60569drVigStip.JP252948.2.0.nbis-exon-60569Vigna stipulaceaexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
three_prime_utr-8844drVigStip.JP252948.2.0.three_prime_utr-8844Vigna stipulaceathree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-58494drVigStip.JP252948.2.0.cds-58494Vigna stipulaceaCDS
cds-58493drVigStip.JP252948.2.0.cds-58493Vigna stipulaceaCDS
cds-58492drVigStip.JP252948.2.0.cds-58492Vigna stipulaceaCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
five_prime_utr-9364drVigStip.JP252948.2.0.five_prime_utr-9364Vigna stipulaceafive_prime_UTR
five_prime_utr-9363drVigStip.JP252948.2.0.five_prime_utr-9363Vigna stipulaceafive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigStip.JP252948.2.0.Vigst.04G197600.01drVigStip.JP252948.2.0.Vigst.04G197600.01Vigna stipulaceapolypeptide
drVigStip.JP252948.2.0.Vigst.04G197600.01drVigStip.JP252948.2.0.Vigst.04G197600.01-proteinVigna stipulaceapolypeptide


Homology
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A7J7BYM8|A0A7J7BYM8_TRIWF (Nucleolar protein 10 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW22G00696 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.901e-37
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
            MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6J1B6K5|A0A6J1B6K5_9ROSI (Nucleolar protein 10 OS=Herrania umbratica OX=108875 GN=LOC110424568 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.336e-36
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
            MYLQFYINENGDKVYTTKKESP+G+PTQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct:    1 MYLQFYINENGDKVYTTKKESPVGMPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2G9GIP1|A0A2G9GIP1_9LAMI (Nucleolar protein 10 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22395 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.837e-36
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
            MYLQFYINENGDKVYTTKKESPLGL TQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct:    1 MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A7J7CYK9|A0A7J7CYK9_TRIWF (Nucleolar protein 10 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00152 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.837e-36
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
            MYLQFYINENGDKVYTTKKESPLGL TQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct:    1 MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8L9R1|A0A8B8L9R1_ABRPR (Nucleolar protein 10 OS=Abrus precatorius OX=3816 GN=LOC113863537 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.837e-36
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
            MYLQFYINENGDKVYTTKKESPLGL TQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct:    1 MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A061GKM2|A0A061GKM2_THECC (Nucleolar protein 10 OS=Theobroma cacao OX=3641 GN=TCM_029425 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.322e-36
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
            MYLQFYINENGDKVYTTKKESP+G+PTQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct:   76 MYLQFYINENGDKVYTTKKESPVGMPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 139
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445LCI7|A0A445LCI7_GLYSO (Nucleolar protein 10 OS=Glycine soja OX=3848 GN=D0Y65_007356 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.946e-36
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
            MYLQFYIN+NGDKVYTTKKESP+GLPTQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct:    1 MYLQFYINDNGDKVYTTKKESPVGLPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0R4J2W3|A0A0R4J2W3_SOYBN (Nucleolar protein 10 OS=Glycine max OX=3847 GN=100306376 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.946e-36
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
            MYLQFYIN+NGDKVYTTKKESP+GLPTQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct:    1 MYLQFYINDNGDKVYTTKKESPVGLPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A804HTT8|A0A804HTT8_MUSAM (Nucleolar protein 10 OS=Musa acuminata subsp. malaccensis OX=214687 GN=103992599 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.113e-36
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
            MYLQFYINENGDKVYTTKKESPLG+ TQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct:    1 MYLQFYINENGDKVYTTKKESPLGMATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6P6BJN5|A0A6P6BJN5_DURZI (Nucleolar protein 10 OS=Durio zibethinus OX=66656 GN=LOC111318660 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.288e-36
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
            MYLQFYINENGDKVYTTKKESPLG+PTQSAHPARFSPDD YS+QR +LKKRFGLLPTQQPPPKY
Sbjct:    1 MYLQFYINENGDKVYTTKKESPLGMPTQSAHPARFSPDDKYSRQRFLLKKRFGLLPTQQPPPKY 64
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q93XX8|NOP10_ARATH (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g20490 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.717e-33
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
            MYLQ YINE G+KVYTTKKESPLGL T+SAHPARFSPDD YSKQRV+LKKRFGLLPTQ  P +Y
Sbjct:    1 MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 64
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6DRH5|NOP10_DANRE (H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.729e-27
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPP 62
            M+LQFY+NENG++VYT KK  P G PT SAHPARFSPDD +S+ RV +KKRFGLL TQQP P
Sbjct:    1 MFLQFYLNENGERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQPRP 62
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9V5P6|NOP10_DROME (H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=CG7637 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.643e-25
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
            MYL + INENGD+VYT KK +  G PT SAHPARFSP+D YS+QR+ +KKRFGLL TQ+P P Y
Sbjct:    1 MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKPEPIY 64
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9CQS2|NOP10_MOUSE (H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus OX=10090 GN=Nop10 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.935e-24
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPP 62
            M+LQ+Y+NE GD+VYT KK  P+G  T SAHPARFSPDD YS+ R+ +KKRF +L TQQP P
Sbjct:    1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQPRP 62
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9NPE3|NOP10_HUMAN (H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.935e-24
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPP 62
            M+LQ+Y+NE GD+VYT KK  P+G  T SAHPARFSPDD YS+ R+ +KKRF +L TQQP P
Sbjct:    1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQPRP 62
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q54J26|NOP10_DICDI (H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum OX=44689 GN=nop10 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.412e-22
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
            M+L +Y +++G +VYT KKESP    T SAHPARFS DD YS++R+ LKKRFGLL TQQPP ++
Sbjct:    1 MHLMYYNDKDGQRVYTLKKESPNHEATYSAHPARFSVDDKYSRERIALKKRFGLLLTQQPPLEF 64
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9P7M5|NOP10_SCHPO (H/ACA ribonucleoprotein complex subunit nop10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nop10 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.055e-20
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
            M+L +Y+N+ G +VYT KK SP G  T+S+HPARFSPDD YS+QR  LKKRF +L TQ P   Y
Sbjct:    1 MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLPAKPY 64
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9XVR8|NOP10_CAEEL (Putative H/ACA ribonucleoprotein complex subunit 3 OS=Caenorhabditis elegans OX=6239 GN=nola-3 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.749e-20
Identity = 34/59 (57.63%), Postives = 48/59 (81.36%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQ 59
            M+L+++++EN  +VYT K+ +P G  T +AHPARFSP+D  SK R+I+KKRFGLLPTQ+
Sbjct:    1 MFLRYFLDENQQRVYTLKRTAPSGEQTLTAHPARFSPEDKNSKYRIIIKKRFGLLPTQK 59
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6BQP3|NOP10_DEBHA (H/ACA ribonucleoprotein complex subunit NOP10 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=NOP10 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-19
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQ 58
            M+L + +  +G +VYT  K +  G  T+SAHPARFSPDD YS+QRV LKKRFGLLPTQ
Sbjct:    1 MHLMYTLGPDGKRVYTLNKTTSDGEITKSAHPARFSPDDKYSRQRVTLKKRFGLLPTQ 58
[Close]
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6Q547|NOP10_YEAST (H/ACA ribonucleoprotein complex subunit NOP10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NOP10 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.552e-18
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQ 58
            M+L + +  +G ++YT KK +  G  T+SAHPARFSPDD YS+QRV LKKRFGL+P Q
Sbjct:    1 MHLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 58
[Close]
BLAST of Vigst.04G197600.01 vs. Araport11
Match: | (Symbols: NOP10, EDA27 | EMBRYO SAC DEVELOPMENT ARREST 27 | chr2:8831897-8832723 FORWARD LENGTH=64)

HSP 1 Score: 111.694 bits (278), Expect = 2.051e-34
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY* 65
            MYLQ YINE G+KVYTTKKESPLGL T+SAHPARFSPDD YSKQRV+LKKRFGLLPTQ  P +Y*
Sbjct:    1 MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY* 65
[Close]
BLAST of Vigst.04G197600.01 vs. Araport11
Match: | (Symbols: NOP10, EDA27 | EMBRYO SAC DEVELOPMENT ARREST 27 | chr2:8831897-8832723 FORWARD LENGTH=64)

HSP 1 Score: 111.694 bits (278), Expect = 2.051e-34
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY* 65
            MYLQ YINE G+KVYTTKKESPLGL T+SAHPARFSPDD YSKQRV+LKKRFGLLPTQ  P +Y*
Sbjct:    1 MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY* 65
[Close]
BLAST of Vigst.04G197600.01 vs. Araport11
Match: | (Symbols: NOP10, EDA27 | EMBRYO SAC DEVELOPMENT ARREST 27 | chr2:8831897-8832723 FORWARD LENGTH=63)

HSP 1 Score: 105.531 bits (262), Expect = 5.839e-32
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 0 
Query:    1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY* 65
            MYLQ YINE G+KVYTTK ESPLGL T+SAHPARFSPDD YSKQRV+LKKRFGLLPTQ  P +Y*
Sbjct:    1 MYLQCYINEKGEKVYTTK-ESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY* 64
The following BLAST results are available for this feature:
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A7J7BYM8|A0A7J7BYM8_TRIWF2.901e-3795.31Nucleolar protein 10 OS=Tripterygium wilfordii OX=... [more]
tr|A0A6J1B6K5|A0A6J1B6K5_9ROSI1.336e-3692.19Nucleolar protein 10 OS=Herrania umbratica OX=1088... [more]
tr|A0A2G9GIP1|A0A2G9GIP1_9LAMI1.837e-3693.75Nucleolar protein 10 OS=Handroanthus impetiginosus... [more]
tr|A0A7J7CYK9|A0A7J7CYK9_TRIWF1.837e-3693.75Nucleolar protein 10 OS=Tripterygium wilfordii OX=... [more]
tr|A0A8B8L9R1|A0A8B8L9R1_ABRPR1.837e-3693.75Nucleolar protein 10 OS=Abrus precatorius OX=3816 ... [more]
tr|A0A061GKM2|A0A061GKM2_THECC2.322e-3692.19Nucleolar protein 10 OS=Theobroma cacao OX=3641 GN... [more]
tr|A0A445LCI7|A0A445LCI7_GLYSO2.946e-3692.19Nucleolar protein 10 OS=Glycine soja OX=3848 GN=D0... [more]
tr|A0A0R4J2W3|A0A0R4J2W3_SOYBN2.946e-3692.19Nucleolar protein 10 OS=Glycine max OX=3847 GN=100... [more]
tr|A0A804HTT8|A0A804HTT8_MUSAM3.113e-3692.19Nucleolar protein 10 OS=Musa acuminata subsp. mala... [more]
tr|A0A6P6BJN5|A0A6P6BJN5_DURZI3.288e-3692.19Nucleolar protein 10 OS=Durio zibethinus OX=66656 ... [more]
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BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|Q93XX8|NOP10_ARATH2.717e-3382.81H/ACA ribonucleoprotein complex subunit 3-like pro... [more]
sp|Q6DRH5|NOP10_DANRE5.729e-2770.97H/ACA ribonucleoprotein complex subunit 3 OS=Danio... [more]
sp|Q9V5P6|NOP10_DROME2.643e-2567.19H/ACA ribonucleoprotein complex subunit 3 OS=Droso... [more]
sp|Q9CQS2|NOP10_MOUSE3.935e-2464.52H/ACA ribonucleoprotein complex subunit 3 OS=Mus m... [more]
sp|Q9NPE3|NOP10_HUMAN3.935e-2464.52H/ACA ribonucleoprotein complex subunit 3 OS=Homo ... [more]
sp|Q54J26|NOP10_DICDI9.412e-2260.94H/ACA ribonucleoprotein complex subunit 3 OS=Dicty... [more]
sp|Q9P7M5|NOP10_SCHPO5.055e-2059.38H/ACA ribonucleoprotein complex subunit nop10 OS=S... [more]
sp|Q9XVR8|NOP10_CAEEL8.749e-2057.63Putative H/ACA ribonucleoprotein complex subunit 3... [more]
sp|Q6BQP3|NOP10_DEBHA3.243e-1962.07H/ACA ribonucleoprotein complex subunit NOP10 OS=D... [more]
sp|Q6Q547|NOP10_YEAST2.552e-1858.62H/ACA ribonucleoprotein complex subunit NOP10 OS=S... [more]
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BLAST of Vigst.04G197600.01 vs. Araport11
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs arabidopsis Araport11)
Total hits: 3
Match NameE-valueIdentityDescription
|2.051e-3483.08Symbols: NOP10, EDA27 | EMBRYO SAC DEVELOPMENT ARR... [more]
|2.051e-3483.08Symbols: NOP10, EDA27 | EMBRYO SAC DEVELOPMENT ARR... [more]
|5.839e-3281.54Symbols: NOP10, EDA27 | EMBRYO SAC DEVELOPMENT ARR... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna stipulacea acc. JP252948 genome v1.0
Date Performed: 2024-08-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableFUNFAMG3DSA:2.20.28.40:FF:000001coord: 10..54
e-value: 2.7E-30
score: 106.1
NoneNo IPR availableGENE3D2.20.28.40H/ACA ribonucleoprotein complex, subunit Nop10coord: 10..54
e-value: 7.7E-14
score: 53.4
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PFAMPF04135Nop10pcoord: 3..52
e-value: 1.9E-16
score: 71.2
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PANTHERPTHR13305RIBOSOME BIOGENESIS PROTEIN NOP10coord: 1..64
IPR036756H/ACA ribonucleoprotein complex, subunit Nop10 superfamilySUPERFAMILY144210Nop10-like SnoRNPcoord: 3..58

Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigStip.JP252948.2.0.Vigst.04G197600.01 ID=drVigStip.JP252948.2.0.Vigst.04G197600.01; Name=Vigst.04G197600.01; organism=Vigna stipulacea; type=mRNA; length=195bp
ATGTATCTTCAGTTTTACATAAACGAGAATGGTGACAAAGTCTACACCAC
TAAGAAAGAGTCGCCGCTAGGGTTACCTACACAATCTGCGCATCCAGCCC
GGTTTTCACCCGATGATGTATATTCGAAGCAAAGAGTTATTCTGAAGAAG
CGTTTTGGATTGTTACCAACCCAGCAGCCACCTCCTAAGTACTGA
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protein sequence of drVigStip.JP252948.2.0.Vigst.04G197600.01

>drVigStip.JP252948.2.0.Vigst.04G197600.01 ID=drVigStip.JP252948.2.0.Vigst.04G197600.01; Name=drVigStip.JP252948.2.0.Vigst.04G197600.01; organism=Vigna stipulacea; type=polypeptide; length=65bp
MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKK
RFGLLPTQQPPPKY*
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mRNA from alignment at Chr04:32270024..32272234-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigStip.JP252948.2.0.Vigst.04G197600.01 ID=drVigStip.JP252948.2.0.Vigst.04G197600.01; Name=Vigst.04G197600.01; organism=Vigna stipulacea; type=mRNA; length=2211bp; location=Sequence derived from: Chr04:32270024..32272234- (Vigna stipulacea
CGGAGGGGTAAACGGTAAACAGACGGAGGGGGAGGGATCAACACTCCTTG
TCTAGACAGGAAAACCTTATAACCCTCACTCTCTTCACGTTCGGCTGAGT
CTATTCCCGTTGCTGTTTATTTTCGATCAGGTATGTTTCTGATAACCCTG
GATCCATAATTGTTTCCAAATTCTGGTATCAACACGTTATCTGTTTCTAG
CTTTATTGTTATCGTATTCGGTTTTCGCAGTGAGAAGTTATCAGTGATAA
TGTATCTTCAGTTTTACATAAACGAGAATGGTGACAAAGTCTACACCACT
AAGGTGAGTTTTGTATATGGTTCTGTAGTTTGCATCTATTAATGATTCAG
TAATGGAATGAGAAGATTTATTCTTGCGTTTCTTTTGCCCTCTTGACTCA
ATTTGAAATTACTTATTGAAAGGCTGTTTCAGCCCTAGCTCAATTTGACG
CACTGGTTCTTTTCCTACGTTTTAATTTCTTCGTATTAGGATTTCCTTTA
ATGTAATTGCATCTTCATGAATTTCCTTCGCACTAGTTCTGTAATTGCAT
CTTGGTGGTTATCACTGTGTTTTGAAGTGAGTTGTTTTTCTTCTTTGCAG
AAAGAGTCGCCGCTAGGGTTACCTACACAATCTGCGCATCCAGGTATTTT
GCTCTGTTTACTACAGTTTTTTACCTATACATGTGAGGTCTTTCAAATTA
TGTTATATTGTTCGTGAATTCTAAAGAAAACCTTTTGTCCCTCTGTGCAA
TTTCTGTGTTAACACTAAAATGCACCGTGGACCAAATTATAGTTACGGTT
TGAATTTTTTTATTTATTTCTCTTGTAGTTTCGTAGATAATTTTCTGAAA
CGGTCATCTCTTATTCTTGCATTGTTTGGTGGCTAGAATTCTTTGGATTA
ATGGCAGTTTGTGTTTTAATTTTTGGAGGATTTGCTTTGTCAATGACGAC
GGAAAAAGGGTTTTAGCATTGCATTCAATCTGTGGTTCTGTGCAATTTAT
GGTTGGAAATAAAATTCTTTTAGATTTTTTCTCTGGCAGGCAGTCTTCTT
TCGAGTTTATTTGTGAAATTGGGTTCAAGAATTTTCTTGGTTGTGTGGTA
ATAGCCACTGTCAGTGTCAAATTCTTTAGAGAGATTGGCATGCTTTGGTG
CTTGTTCTTGGTCTTTTTCTTTTTGTACCCTTTTCACCTTTTGGTCTTTT
TTCCCTCGAGGATTTTTGGTCTTTATTCCATCGAGGATTTCATTATTTGT
AAGTGAAAAAGTAACATCATCAGCCTCATCGTTTCTCCGTAAGTTCCGAG
TCAGTTTCATCTTGACGTGCATGTTATATGTAACATTGGATGAAAGTCAT
TGACTGAGAAACATCATCATTGTGGCTGTTTGGTTAAGAACTTCTATAGT
GTAGAACTTAGTTGCTTGGGGCTAATTTACTACAAGAAAATATTTTGTAT
TTTGATTTATCGTTTTTAAATTTAATTAAAAAGTCACAGTACTTTGTTTT
CTATTTTCAGCAGTTAAATAACTTATTATTTTCATGTTCCCTATATAATA
TTTTAAAGATCTGCTTGTTGCACAGTTTGGATTTTGTCATTGGCATAAGG
CAGAGTTGTCACTGCTAATTGACAAAAACTTTCCTCGTTTTCATATCTGC
CAAATACATGTCAAATGTTACTTTTAATCTGTTCCATTTTCTGTACTTGT
TATGATGTTAATGGTTTTCCCGAAATGCAGCCCGGTTTTCACCCGATGAT
GTATATTCGAAGCAAAGAGTTATTCTGAAGAAGCGTTTTGGATTGTTACC
AACCCAGCAGCCACCTCCTAAGTACTGAGTGATTTTGAAGTTCCAATTTT
TAAGTCTCTTTAGTATGATTAGCAGTATTTTTGTGAACTAGTGTAGTGCC
GATACATGGGGCCAAGTGATTGAGCCATATATATTGTGTTATGAACGAAT
TACGTAAAATCTGGCTCACGTATTAGAATGAAGTTATCTGATGTTGAAAT
GCATTTTGAGTTGTGTTGCAGTCAATATAATGTTGTAAAACAAATCATGT
CTCCATGCATGGGGTGATTGCCAACTCTCAAAACAAGATAAAAGTGCAAC
TAAACCAGCTACATGAATCTATTAAGAATGAGAGATATTTTTATCTGCTC
AAATATAACTTACACGTTTTTTCCTTTTCCAAACTAAGGAAACATACCAG
AAAGAAGCGAG
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Coding sequence (CDS) from alignment at Chr04:32270024..32272234-

>drVigStip.JP252948.2.0.Vigst.04G197600.01 ID=drVigStip.JP252948.2.0.Vigst.04G197600.01; Name=Vigst.04G197600.01; organism=Vigna stipulacea; type=CDS; length=195bp; location=Sequence derived from: Chr04:32270024..32272234- (Vigna stipulacea
ATGTATCTTCAGTTTTACATAAACGAGAATGGTGACAAAGTCTACACCAC
TAAGAAAGAGTCGCCGCTAGGGTTACCTACACAATCTGCGCATCCAGCCC
GGTTTTCACCCGATGATGTATATTCGAAGCAAAGAGTTATTCTGAAGAAG
CGTTTTGGATTGTTACCAACCCAGCAGCCACCTCCTAAGTACTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007264H/ACA_rnp_Nop10
IPR036756H/ACA_rnp_Nop10_sf
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO:0001522pseudouridine synthesis
Vocabulary: Molecular Function
TermDefinition
GO:0030515snoRNA binding