Vigst.07G039700.01

Transcript Overview
NameVigst.07G039700.01
Unique NamedrVigStip.JP252948.2.0.Vigst.07G039700.01
TypemRNA
OrganismVigna stipulacea ()
Sequence length249
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07chromosomeChr07:3074754..3077584 -Vigna stipulacea acc. JP252948 genome v2.a1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vstvvaR675Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvvaR676Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvvaR710Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvvaR717Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvstL068Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL0124Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL0329Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvstL416Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL0870Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvstL569Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL1137Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL1187Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL1275Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carvstL085Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
pvvstL060Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
carvstL248Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
carvstL252Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
pvvstL200Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvstL229Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvstL556Pisum sativum Cameor genome v1aPisum sativum
psvstL560Pisum sativum Cameor genome v1aPisum sativum
psvstL642Pisum sativum Cameor genome v1aPisum sativum
carvstL631Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
psvstL840Pisum sativum Cameor genome v1aPisum sativum
pvvstL816Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vstvstL235Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvstL237Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstL195Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvstL225Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvstL132Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvstL265Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vstvstL336Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstL330Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvstL331Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvstL286Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvstL301Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvstL677Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvstL822Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vstvuR487Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vstvuR502Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vstvuR521Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vstvuR523Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vstvumR522Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvumR523Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvumR534Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvumR541Vigna umbellata FF25 genome v1.0Vigna umbellata
vasvstL385Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL515Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL558Vigna angularis cv. Shumari genome v1.a1Vigna angularis

Orthologs
Gene/TranscriptAssemblySpecies
Vigan.07G053200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Phvul.L003243.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat5g283320.1Pisum sativum Cameor genome v1aPisum sativum
rna-XM_014641803.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg43485.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
XM_058918021.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vum_07G00426.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun01g152200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun05g256000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vum_04G02299.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigst.04G204700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigst.07G039700drVigStip.JP252948.2.0.Vigst.07G039700Vigna stipulaceagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
nbis-exon-93193drVigStip.JP252948.2.0.nbis-exon-93193Vigna stipulaceaexon
nbis-exon-93194drVigStip.JP252948.2.0.nbis-exon-93194Vigna stipulaceaexon
nbis-exon-93195drVigStip.JP252948.2.0.nbis-exon-93195Vigna stipulaceaexon
nbis-exon-93196drVigStip.JP252948.2.0.nbis-exon-93196Vigna stipulaceaexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
three_prime_utr-13168drVigStip.JP252948.2.0.three_prime_utr-13168Vigna stipulaceathree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-90020drVigStip.JP252948.2.0.cds-90020Vigna stipulaceaCDS
cds-90019drVigStip.JP252948.2.0.cds-90019Vigna stipulaceaCDS
cds-90018drVigStip.JP252948.2.0.cds-90018Vigna stipulaceaCDS
cds-90017drVigStip.JP252948.2.0.cds-90017Vigna stipulaceaCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
five_prime_utr-13989drVigStip.JP252948.2.0.five_prime_utr-13989Vigna stipulaceafive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigStip.JP252948.2.0.Vigst.07G039700.01drVigStip.JP252948.2.0.Vigst.07G039700.01Vigna stipulaceapolypeptide
drVigStip.JP252948.2.0.Vigst.07G039700.01drVigStip.JP252948.2.0.Vigst.07G039700.01-proteinVigna stipulaceapolypeptide


Homology
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3TU64|A0A1S3TU64_VIGRR (Organelle RRM domain-containing protein 6, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106758815 PE=4 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.638e-48
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0 
Query:    1 MGKKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPATGK 82
            MG+KLIVTRLSFYITQDKLQKLFAPFGQ+ASVNLVLD +TKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA  K
Sbjct:    5 MGRKLIVTRLSFYITQDKLQKLFAPFGQVASVNLVLDPRTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPARDK 86
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3SGB9|A0A0S3SGB9_PHAAN (RRM domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G053200 PE=4 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.786e-47
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0 
Query:    1 MGKKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPATGK 82
            MG+KLIVTRLSFYITQDKLQKLFAPFGQLASVNLV D +TKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA  K
Sbjct:    1 MGRKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVFDPRTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPAGDK 82
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T0JF55|A0A8T0JF55_PHAAN (Organelle RRM domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0215120 PE=4 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.786e-47
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0 
Query:    1 MGKKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPATGK 82
            MG+KLIVTRLSFYITQDKLQKLFAPFGQLASVNLV D +TKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA  K
Sbjct:    1 MGRKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVFDPRTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPAGDK 82
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6N8T8|A0A4D6N8T8_VIGUN (Cold-inducible RNA-binding protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g470 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.782e-41
Identity = 66/79 (83.54%), Postives = 75/79 (94.94%), Query Frame = 0 
Query:    1 MGKKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA 79
            MG+KL V+RLSFY TQ++L+KLFAPFG++ASVNLV+D KTKR KGYGFVSYNT+IEAEKALKAMNGRIVDGRLLLVEPA
Sbjct:    1 MGRKLFVSRLSFYATQEQLKKLFAPFGEVASVNLVVDPKTKRTKGYGFVSYNTQIEAEKALKAMNGRIVDGRLLLVEPA 79
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy TrEMBL (2024)
Match: tr|V7BYY1|V7BYY1_PHAVU (RRM domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G141700g PE=4 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.333e-37
Identity = 58/82 (70.73%), Postives = 71/82 (86.59%), Query Frame = 0 
Query:    1 MGKKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPATGK 82
            MG+ L V+RLSFY TQD+L+KLFAPFG + SVNLV+D +TKRPKG+ FVSY ++IEAEKA++AMNGRIVDGRL+ VEPA  K
Sbjct:    1 MGRNLFVSRLSFYTTQDQLKKLFAPFGLVTSVNLVVDPRTKRPKGFAFVSYESQIEAEKAMRAMNGRIVDGRLIFVEPANEK 82
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6A4PGJ7|A0A6A4PGJ7_LUPAL (Putative RNA recognition motif domain-containing protein OS=Lupinus albus OX=3870 GN=Lalb_Chr14g0375031 PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.426e-33
Identity = 52/79 (65.82%), Postives = 67/79 (84.81%), Query Frame = 0 
Query:    1 MGKKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA 79
            MG KL ++RLSF+ T ++L+ LF+PFG +   NLVLD +T+RPKG+GFVSY +EI+AEKA+KAMNGRIVDGRL+ VEPA
Sbjct:    5 MGTKLFISRLSFFTTTEQLKVLFSPFGVITEANLVLDSRTRRPKGFGFVSYESEIQAEKAVKAMNGRIVDGRLIFVEPA 83
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SUX1|A0A151SUX1_CAJCA (Cold-inducible RNA-binding protein OS=Cajanus cajan OX=3821 GN=KK1_013976 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.339e-33
Identity = 54/82 (65.85%), Postives = 69/82 (84.15%), Query Frame = 0 
Query:    1 MGKKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPATGK 82
            +G KL V RLSFY TQ++L+ LF+PFG +  V+LV+D +TKRPKG+GFVSY +EIEAE A+KAMNGRIV+G+L+LVEPA  K
Sbjct:    5 IGTKLFVCRLSFYTTQEQLKTLFSPFGVVTKVDLVMDPRTKRPKGFGFVSYKSEIEAENAMKAMNGRIVNGKLILVEPANEK 86
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9UNZ8|A0A0L9UNZ8_PHAAN (RRM domain-containing protein (Fragment) OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g187400 PE=4 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 8.265e-33
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 0 
Query:   10 LSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRL 73
            LSFYITQDKLQKLFAPFGQLASVNLV D +TKRPKGYGFVSYNTEIEAEKALKAMNGR++   L
Sbjct:    1 LSFYITQDKLQKLFAPFGQLASVNLVFDPRTKRPKGYGFVSYNTEIEAEKALKAMNGRVILSHL 64
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445IDQ6|A0A445IDQ6_GLYSO (Small RNA-binding protein 11, chloroplastic isoform A OS=Glycine soja OX=3848 GN=D0Y65_032533 PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.375e-32
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 0 
Query:    1 MGKKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPATGK 82
            +G KL V RLSFY TQ++L+KLF+PFG +   +L LD  TKRPKG+GFVS+ +EIEAEKA KAMNGRIV+GRL+LVEPA  K
Sbjct:    5 IGTKLFVHRLSFYTTQEQLKKLFSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKACKAMNGRIVNGRLILVEPANEK 86
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy TrEMBL (2024)
Match: tr|I1M4U1|I1M4U1_SOYBN (RRM domain-containing protein OS=Glycine max OX=3847 GN=100781760 PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.375e-32
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 0 
Query:    1 MGKKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPATGK 82
            +G KL V RLSFY TQ++L+KLF+PFG +   +L LD  TKRPKG+GFVS+ +EIEAEKA KAMNGRIV+GRL+LVEPA  K
Sbjct:    5 IGTKLFVHRLSFYTTQEQLKKLFSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKACKAMNGRIVNGRLILVEPANEK 86
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|C0HFE5|ORRM1_MAIZE (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.423e-19
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 0 
Query:    3 KKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA 79
            K+L VT LSFY ++  L+  F PFG+L  V +++D  +KR KGY FV Y TE     ALKAMNG+I++G +++V+ A
Sbjct:  299 KRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKAMNGQIINGWMIVVDVA 375
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6YWP9|ORRM1_ORYSJ (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.154e-18
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 0 
Query:    3 KKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA 79
            K+L VT LSFY ++  L+  F PFG+L  V +++D  +KR KGY F+ Y TE     ALKAMNG+I++G +++V+ A
Sbjct:  295 KRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAMNGQIINGWMIVVDVA 371
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9FX45|ORRM6_ARATH (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.941e-18
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0 
Query:    4 KLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA 79
            KL V+ LSF  T+D L+  F  FG L  +N+V+D    RPKG+ F+ Y TE EA KA++ M+G+ +DGR++ VE A
Sbjct:   78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEA 153
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8L440|ORRM1_ARATH (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.494e-17
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 0 
Query:    3 KKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPATGK 82
            KKL +T LSFY ++  L+  F  FG+L  V +++D  +KR KGY F+ Y TE  A  ALK MNG+I++G +++V+ A  K
Sbjct:  282 KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTK 361
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q28IQ9|CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.418e-16
Identity = 32/76 (42.11%), Postives = 54/76 (71.05%), Query Frame = 0 
Query:    4 KLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA 79
            KL V  L+F  T++ L+++F+ +GQ+A V +V D ++KR +G+GFV++    +A+ A+ AMNG+ VDGR + V+ A
Sbjct:    7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9DED4|CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.335e-15
Identity = 30/76 (39.47%), Postives = 53/76 (69.74%), Query Frame = 0 
Query:    4 KLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA 79
            KL +  L+F   ++ L+++F+ +GQ++ V +V D +TKR +G+GFV++    +A+ A+ AMNG+ VDGR + V+ A
Sbjct:    6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q5RF83|CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii OX=9601 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.151e-15
Identity = 31/76 (40.79%), Postives = 52/76 (68.42%), Query Frame = 0 
Query:    4 KLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA 79
            KL V  LSF   +  L+++F+ +GQ++ V +V D +T+R +G+GFV++    +A+ A+ AMNG+ VDGR + V+ A
Sbjct:    7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q14011|CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.151e-15
Identity = 31/76 (40.79%), Postives = 52/76 (68.42%), Query Frame = 0 
Query:    4 KLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA 79
            KL V  LSF   +  L+++F+ +GQ++ V +V D +T+R +G+GFV++    +A+ A+ AMNG+ VDGR + V+ A
Sbjct:    7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|P60825|CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus OX=10116 GN=Cirbp PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.101e-15
Identity = 31/76 (40.79%), Postives = 52/76 (68.42%), Query Frame = 0 
Query:    4 KLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA 79
            KL V  LSF   +  L+++F+ +GQ++ V +V D +T+R +G+GFV++    +A+ A+ AMNG+ VDGR + V+ A
Sbjct:    7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
[Close]
BLAST of Vigst.07G039700.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|P60824|CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus OX=10090 GN=Cirbp PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.101e-15
Identity = 31/76 (40.79%), Postives = 52/76 (68.42%), Query Frame = 0 
Query:    4 KLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA 79
            KL V  LSF   +  L+++F+ +GQ++ V +V D +T+R +G+GFV++    +A+ A+ AMNG+ VDGR + V+ A
Sbjct:    7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
[Close]
BLAST of Vigst.07G039700.01 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:16912511-16913250 REVERSE LENGTH=102)

HSP 1 Score: 93.5893 bits (231), Expect = 1.593e-26
Identity = 39/79 (49.37%), Postives = 61/79 (77.22%), Query Frame = 0 
Query:    1 MGKKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA 79
            +  +L V+RLS Y T   L++LF+PFGQ+    L+ D +T+RPKG+GF+++++E +A KALK+++G+IVDGRL+ VE A
Sbjct:    5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVA 83
[Close]
BLAST of Vigst.07G039700.01 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:24113462-24114449 FORWARD LENGTH=157)

HSP 1 Score: 79.7221 bits (195), Expect = 2.174e-20
Identity = 36/70 (51.43%), Postives = 53/70 (75.71%), Query Frame = 0 
Query:   10 LSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA 79
            LS Y T   L++LFAPF +L     + D +T+RPKG+GF+++ +E +A+KALKA+NG+IV+GRL+ VE A
Sbjct:   78 LSAYTTDQSLRQLFAPFARL-----IKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETA 142
[Close]
BLAST of Vigst.07G039700.01 vs. Araport11
Match: | (Symbols: ORRM6 | Organelle RNA Recognition Motif Protein 6 | chr1:27643801-27645386 REVERSE LENGTH=181)

HSP 1 Score: 77.7962 bits (190), Expect = 2.003e-19
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0 
Query:    4 KLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPA 79
            KL V+ LSF  T+D L+  F  FG L  +N+V+D    RPKG+ F+ Y TE EA KA++ M+G+ +DGR++ VE A
Sbjct:   78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEA 153
[Close]
BLAST of Vigst.07G039700.01 vs. Araport11
Match: | (Symbols: ORRM1 | Organelle RRM protein 1 | chr3:7331739-7333749 FORWARD LENGTH=374)

HSP 1 Score: 78.1814 bits (191), Expect = 1.518e-18
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 0 
Query:    3 KKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPATGK 82
            KKL +T LSFY ++  L+  F  FG+L  V +++D  +KR KGY F+ Y TE  A  ALK MNG+I++G +++V+ A  K
Sbjct:  282 KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTK 361
[Close]
BLAST of Vigst.07G039700.01 vs. Araport11
Match: | (Symbols: ORRM1 | Organelle RRM protein 1 | chr3:7331739-7333749 FORWARD LENGTH=379)

HSP 1 Score: 73.1738 bits (178), Expect = 1.049e-16
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 0 
Query:    3 KKLIVTRLSFYITQDKLQKLFAPFGQL-----ASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPATGK 82
            KKL +T LSFY ++  L+  F  FG+L     ++V +++D  +KR KGY F+ Y TE  A  ALK MNG+I++G +++V+ A  K
Sbjct:  282 KKLFITGLSFYTSEKTLRAAFEGFGELVEEHSSAVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTK 366
[Close]
BLAST of Vigst.07G039700.01 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:15743112-15744504 REVERSE LENGTH=142)

HSP 1 Score: 67.781 bits (164), Expect = 7.799e-16
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 0 
Query:    4 KLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVE 77
            +L V+ LS   T +KLQ  FA FGQL    ++ D  + R KG+GFV+Y T  +AEKA   MN + +DG ++ V+
Sbjct:   35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVD 108
[Close]
BLAST of Vigst.07G039700.01 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:11695350-11696563 REVERSE LENGTH=116)

HSP 1 Score: 64.6994 bits (156), Expect = 6.988e-15
Identity = 27/73 (36.99%), Postives = 53/73 (72.60%), Query Frame = 0 
Query:    5 LIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVE 77
            L V  +SF  T++ L + F+ +GQ+  V++++D    RPKG+ +V+++++ EAEKAL  +N ++VDGR+++++
Sbjct:   23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVILD 95
[Close]
BLAST of Vigst.07G039700.01 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:6357503-6359081 REVERSE LENGTH=172)

HSP 1 Score: 65.4698 bits (158), Expect = 9.018e-15
Identity = 24/64 (37.50%), Postives = 50/64 (78.12%), Query Frame = 0 
Query:   14 ITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVE 77
            +++ +L+K+F+ FGQ+ +V ++ + +T++  GYG+V +N++ +A+ A++AMNG+  DGR +LV+
Sbjct:   88 VSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVK 151
[Close]
BLAST of Vigst.07G039700.01 vs. Araport11
Match: | (Symbols: S-RBP11 | small RNA-binding protein 11 | chr5:1878497-1879515 FORWARD LENGTH=146)

HSP 1 Score: 63.929 bits (154), Expect = 2.552e-14
Identity = 30/82 (36.59%), Postives = 49/82 (59.76%), Query Frame = 0 
Query:    1 MGKKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPATGK 82
            +  KL +  LSF  T+  L + F+  GQ+    +V+D  + R KG+GFV++ +  EA+KAL   NG+ ++GR + V+ A  K
Sbjct:   32 VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAK 113
[Close]
BLAST of Vigst.07G039700.01 vs. Araport11
Match: | (Symbols: RBGA4, GRP4, AtGRP4, GR-RBP4 | RNA-binding glycine-rich protein A4, glycine-rich RNA-binding protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136)

HSP 1 Score: 63.5438 bits (153), Expect = 2.597e-14
Identity = 29/80 (36.25%), Postives = 47/80 (58.75%), Query Frame = 0 
Query:    1 MGKKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPAT 80
            M  KL V  LS+      L++ F  FG++    ++ D +T R +G+GFVS++ E  A  A+K M+G+ ++GR + V  AT
Sbjct:   33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLAT 112
The following BLAST results are available for this feature:
BLAST of Vigst.07G039700.01 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S3TU64|A0A1S3TU64_VIGRR6.638e-4892.68Organelle RRM domain-containing protein 6, chlorop... [more]
tr|A0A0S3SGB9|A0A0S3SGB9_PHAAN1.786e-4792.68RRM domain-containing protein OS=Vigna angularis v... [more]
tr|A0A8T0JF55|A0A8T0JF55_PHAAN1.786e-4792.68Organelle RRM domain-containing protein OS=Phaseol... [more]
tr|A0A4D6N8T8|A0A4D6N8T8_VIGUN4.782e-4183.54Cold-inducible RNA-binding protein OS=Vigna unguic... [more]
tr|V7BYY1|V7BYY1_PHAVU5.333e-3770.73RRM domain-containing protein OS=Phaseolus vulgari... [more]
tr|A0A6A4PGJ7|A0A6A4PGJ7_LUPAL2.426e-3365.82Putative RNA recognition motif domain-containing p... [more]
tr|A0A151SUX1|A0A151SUX1_CAJCA4.339e-3365.85Cold-inducible RNA-binding protein OS=Cajanus caja... [more]
tr|A0A0L9UNZ8|A0A0L9UNZ8_PHAAN8.265e-3387.50RRM domain-containing protein (Fragment) OS=Phaseo... [more]
tr|A0A445IDQ6|A0A445IDQ6_GLYSO3.375e-3267.07Small RNA-binding protein 11, chloroplastic isofor... [more]
tr|I1M4U1|I1M4U1_SOYBN3.375e-3267.07RRM domain-containing protein OS=Glycine max OX=38... [more]
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BLAST of Vigst.07G039700.01 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|C0HFE5|ORRM1_MAIZE8.423e-1948.05Organelle RRM domain-containing protein 1, chlorop... [more]
sp|Q6YWP9|ORRM1_ORYSJ1.154e-1846.75Organelle RRM domain-containing protein 1, chlorop... [more]
sp|Q9FX45|ORRM6_ARATH1.941e-1847.37Organelle RRM domain-containing protein 6, chlorop... [more]
sp|Q8L440|ORRM1_ARATH1.494e-1745.00Organelle RRM domain-containing protein 1, chlorop... [more]
sp|Q28IQ9|CIRBP_XENTR2.418e-1642.11Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
sp|Q9DED4|CIRBB_XENLA1.335e-1539.47Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
sp|Q5RF83|CIRBP_PONAB3.151e-1540.79Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
sp|Q14011|CIRBP_HUMAN3.151e-1540.79Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
sp|P60825|CIRBP_RAT5.101e-1540.79Cold-inducible RNA-binding protein OS=Rattus norve... [more]
sp|P60824|CIRBP_MOUSE5.101e-1540.79Cold-inducible RNA-binding protein OS=Mus musculus... [more]
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BLAST of Vigst.07G039700.01 vs. Araport11
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs arabidopsis Araport11)
Total hits: 10
Match NameE-valueIdentityDescription
|1.593e-2649.37Symbols: no symbol available | no full name availa... [more]
|2.174e-2051.43Symbols: no symbol available | no full name availa... [more]
|2.003e-1947.37Symbols: ORRM6 | Organelle RNA Recognition Motif P... [more]
|1.518e-1845.00Symbols: ORRM1 | Organelle RRM protein 1 | chr3:73... [more]
|1.049e-1642.35Symbols: ORRM1 | Organelle RRM protein 1 | chr3:73... [more]
|7.799e-1643.24Symbols: no symbol available | no full name availa... [more]
|6.988e-1536.99Symbols: no symbol available | no full name availa... [more]
|9.018e-1537.50Symbols: no symbol available | no full name availa... [more]
|2.552e-1436.59Symbols: S-RBP11 | small RNA-binding protein 11 | ... [more]
|2.597e-1436.25Symbols: RBGA4, GRP4, AtGRP4, GR-RBP4 | RNA-bindin... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna stipulacea acc. JP252948 genome v1.0
Date Performed: 2024-08-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..82
e-value: 8.2E-26
score: 92.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 5..74
e-value: 1.3E-17
score: 74.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 3..81
score: 18.069229
IPR050441RNA-binding motifPANTHERPTHR48034TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATEDcoord: 3..82
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..82

Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigStip.JP252948.2.0.Vigst.07G039700.01 ID=drVigStip.JP252948.2.0.Vigst.07G039700.01; Name=Vigst.07G039700.01; organism=Vigna stipulacea; type=mRNA; length=249bp
ATGGGGAAAAAACTCATAGTCACGAGATTATCTTTTTACATTACACAGGA
CAAGCTGCAGAAGTTGTTCGCTCCGTTCGGACAACTTGCTAGTGTTAATC
TCGTGTTGGATCATAAAACTAAAAGACCCAAAGGGTATGGGTTTGTCTCC
TACAACACTGAAATTGAAGCGGAAAAGGCTCTGAAAGCCATGAATGGCAG
GATTGTTGATGGAAGGCTGCTTTTGGTTGAACCTGCCACCGGTAAATGA
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protein sequence of drVigStip.JP252948.2.0.Vigst.07G039700.01

>drVigStip.JP252948.2.0.Vigst.07G039700.01 ID=drVigStip.JP252948.2.0.Vigst.07G039700.01; Name=drVigStip.JP252948.2.0.Vigst.07G039700.01; organism=Vigna stipulacea; type=polypeptide; length=83bp
MGKKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVLDHKTKRPKGYGFVS
YNTEIEAEKALKAMNGRIVDGRLLLVEPATGK*
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mRNA from alignment at Chr07:3074754..3077584-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigStip.JP252948.2.0.Vigst.07G039700.01 ID=drVigStip.JP252948.2.0.Vigst.07G039700.01; Name=Vigst.07G039700.01; organism=Vigna stipulacea; type=mRNA; length=2831bp; location=Sequence derived from: Chr07:3074754..3077584- (Vigna stipulacea
GAAAGACCCAATTCGTGATTTGAAATCCAATTATTTTTCTTTTATAAATC
AATGAAGAAGTAAATATAAAATGAAGATGCTTAGAACAAGAAAGGATAAA
TCTTGCAGAGAATGGGGAAAAAACTCATAGTCACGAGTTAGGGTTCTTCT
TTCTTTCCTCTCTTTGATCAAATCAAGGCCCAAATCCTCACCATTGCTGC
ATTTTGTTTTTCAGGATTATCTTTTTACATTACACAGGACAAGCTGCAGA
AGTTGTTCGCTCCGTTCGGACAACTTGCTAGTGGTGTGTTTTGCTTTGTT
TGTGTTTGTGTTAGGCCTTTTCTCTGTTTCAATTTTGCTCTCTTTCCCAT
TTAGCTCACCCTCTTGTTCAATTGTGTTATTCAGTTAATCTCGTGTTGGA
TCATAAAACTAAAAGACCCAAAGGGTATGGGTTTGTCTCCTACAACACTG
AAATTGAAGCGGAAAAGGCTCTGAAAGCCATGAATGGCAGGGTAATTTTA
TCTCATCTGTATCCACTGTTGTTTCCTTTTACCAACATCATACCAGGCAC
CCTATCTGTACACTTGGATGATTATATTCTGGTGCAAGTGACTACGCATT
GAAGGTGTTTGTTTAAATGCCTGAATGATTGCTGATTGGAAATATTAAAG
TATTTCCATGAAAGTGGTCTAGCTGTCTCAGTGTCCTTGTTGACTTTTGT
TGGCCAACGTAAACATTACTGTACTTCACATAAAGTTGTATTGGATGCCT
TTTCACTACATTTATCTGTTAGCGGCTTGATGATTTTTTTTTTCTTGCAA
GAAAAGAAAAAACTCAAGGCGGCTCTTTCATTTGTTTCGCTAACTACTCT
CATCCTTGTTATGACTTCCATTGAACTCCCTTGATTGATTGAAAAATTAT
TAATTTCTGCTTTGAGTGTTTTTTGATACATAAGGAAAACATTTAATGTT
GTCTTCTACTTAATCATATGCCTCAAGCGGTGGTAGAGTGAAACCACTAA
GGGTAAGGGAAATGGAAGGAATTATGTTTTCTTTTCTGAGAATAAATATA
ATGTATTTCAACTCATGTTAAATCATCGGGGTTAGGCAAGTGTTTCCATG
CAGAAAATAATAATACAAATGCACTAGAGTATATGCATCGTGTATCTTTC
TTCTTCTGATCTATAGTCTGATCATTATTATTATTATTTTTTAAAATTTG
GGAGAAAGTTCTATAGTTATAATTCTCCTTGTCTGTTATTCATTAAGTAA
CATGAATTTTGCCAGTTATTGTTAGAGAACATTTCTCTTTCTCCCACAAC
GAGGATCAAAGGATTATGGACACACATAATAATATCATCACATTGAGCTG
AATCAGTTTTAATTGTCCAATCTCTTGATTGATTCCTTTGATGATGCTTA
AGTTTTCCTAGAATTAAGATACATCAACCAAGTTTTGGAATGCACCTAAA
AAGTTCCTCCTCTCGTGATGTTGATTTCGGTTTTTTATTTGTTCTTTTCA
ACAGTTACGTACTAATATTGCTCTCTTTAAGCATTAATGAGATTAAAATA
CTGATAGTTGTATTTGTCATGTTTATGATTCTAACTTGTATGTTGTGTTT
ATAGTTACACAGTCTACTACTATGCATGGAAAACTATGTTGTGACTTATT
GTTGGAAATTTCCCTGGCATGTCAAATTCTTATTATAAATCCAAATGCTC
CTGCATACATCCGTGGCTTACTCGAATTTGATAATTAATTGTCATGTTTG
CACATATGCACATCAAGATTGTATAATTTTCTTTTATCTAGCCTTGGTGA
TGGGTGAGAATTTCATGGGTAAGACATGGGACTTCTTAAGCATGAACAAA
TTTAGCCGTCTAGTTATATCTTTGATTTCTTTTTAGTCATCCCGCTTTCT
TGATTTCATCACTGCACCCACTAATAAAAAGAATCTGTCATAGGAATGGA
TCTGACAATAAATTCATACTGCAAGATGGATTTTTTTTTTGTTTACTTCA
ATATGTTATTCTCGTTTCCTGCGTGGTGCAGATTGTTGATGGAAGGCTGC
TTTTGGTTGAACCTGCCACCGGTAAATGATCTGGGAAGACCCTGCCTCAT
ACTCATCCATGAACTAATCTTTTCTGTTTTCATCGTACCTAGAGTAAAAC
TTGATCAATGATCAAGGTCCTCGTGTTTTTTTTTTTTCTTTTTATGTTCA
TGGCTCCTCGGTTTCTTATGCTTTGTCTTCAAACAATGAACAATATTACA
TCGTGAGAAACGCTTATAAATCTCAATAGTTTGACCCTTTAGTTATTTTC
AGGTAAGTACTATTTTAATATAAAATAGGTTTATGATGTATGACTAATCC
TATAAATATAATTAGCATTTTTTCGAGGGATACGGAATTCACAATCCTAA
ATATACTTGCTTACACATTTGATTTCACTCTCTTATTGATTTCAGCGTTG
TTGAAGAGTCTTTGCAGGCAGATTTCTCCTCTTTTGGAACAAGAGAAAGT
CGACAAAAAGCCCTGAGAAACGATCGCCGCTTGCCCAAAGAAGATTCACA
TTAATCCCCGTTAAGATCAATTTCTAATTAAAAAATATAAATAAACTCAC
TTGTAGTTTAATGTGTCTCGTCTCAAGCATAATGATCATTAATAACAAAC
TTTTACATAATTTATTTTCCTTCGATCATTATCTTGAGAGAACTGAAAAA
GAAAAGAATATTGGCAAAATCACTTTGTTCTCAAATGTAAATACAGTATT
TGAAAGCACGGTTGTCGTTCCCTGATGGCGAAGCAAAGTAGCCAACCCCA
TAAGTAGGATAGTGATTAGGGAGATGACTGC
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Coding sequence (CDS) from alignment at Chr07:3074754..3077584-

>drVigStip.JP252948.2.0.Vigst.07G039700.01 ID=drVigStip.JP252948.2.0.Vigst.07G039700.01; Name=Vigst.07G039700.01; organism=Vigna stipulacea; type=CDS; length=249bp; location=Sequence derived from: Chr07:3074754..3077584- (Vigna stipulacea
ATGGGGAAAAAACTCATAGTCACGAGATTATCTTTTTACATTACACAGGA
CAAGCTGCAGAAGTTGTTCGCTCCGTTCGGACAACTTGCTAGTGTTAATC
TCGTGTTGGATCATAAAACTAAAAGACCCAAAGGGTATGGGTTTGTCTCC
TACAACACTGAAATTGAAGCGGAAAAGGCTCTGAAAGCCATGAATGGCAG
GATTGTTGATGGAAGGCTGCTTTTGGTTGAACCTGCCACCGGTAAATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR050441RBM
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding