Vigst.07G088900.01

Transcript Overview
NameVigst.07G088900.01
Unique NamedrVigStip.JP252948.2.0.Vigst.07G088900.01
TypemRNA
OrganismVigna stipulacea ()
Sequence length345
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07chromosomeChr07:11135845..11136651 +Vigna stipulacea acc. JP252948 genome v2.a1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vstvvaR673Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvvaR714Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvstL126Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL0331Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvstL269Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL0663Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL0664Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvstL569Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL1187Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL1275Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carvstL080Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
carvstL087Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
psvstL107Pisum sativum Cameor genome v1aPisum sativum
pvvstL208Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvstL330Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvstL562Pisum sativum Cameor genome v1aPisum sativum
psvstL567Pisum sativum Cameor genome v1aPisum sativum
pvvstL551Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
carvstL629Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
pvvstL637Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
carvstL747Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
vrvvstL078Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vstvstL088Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstL117Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvstL196Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvstL230Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvstL234Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvstL131Vicia sativa cv. Studenica genome v1.0Vicia sativa
vstvstL283Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vssvstL652Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvstL821Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vstvuR502Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vstvuR523Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vstvuR527Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vstvumR503Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvumR527Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvumR533Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvumR539Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvumR541Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvumR549Vigna umbellata FF25 genome v1.0Vigna umbellata
vasvstL096Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL474Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL514Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL558Vigna angularis cv. Shumari genome v1.a1Vigna angularis

Orthologs
Gene/TranscriptAssemblySpecies
Vum_06G00211.1Vigna umbellata FF25 genome v1.0Vigna umbellata
XM_058917825.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun05g200400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vum_07G00943.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigst.07G088900drVigStip.JP252948.2.0.Vigst.07G088900Vigna stipulaceagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
nbis-exon-95889drVigStip.JP252948.2.0.nbis-exon-95889Vigna stipulaceaexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
five_prime_utr-14435drVigStip.JP252948.2.0.five_prime_utr-14435Vigna stipulaceafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-92608drVigStip.JP252948.2.0.cds-92608Vigna stipulaceaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
three_prime_utr-13584drVigStip.JP252948.2.0.three_prime_utr-13584Vigna stipulaceathree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigStip.JP252948.2.0.Vigst.07G088900.01drVigStip.JP252948.2.0.Vigst.07G088900.01Vigna stipulaceapolypeptide
drVigStip.JP252948.2.0.Vigst.07G088900.01drVigStip.JP252948.2.0.Vigst.07G088900.01-proteinVigna stipulaceapolypeptide


Homology
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3W1Q8|A0A1S3W1Q8_VIGRR (Calcium-binding protein PBP1-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106780433 PE=4 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.822e-74
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVGADPMLM 114
            MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLK+NCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVGADPMLM
Sbjct:    1 MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKINCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVGADPMLM 114
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy TrEMBL (2024)
Match: tr|V7BX75|V7BX75_PHAVU (EF-hand domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G087900g PE=4 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 4.844e-73
Identity = 111/114 (97.37%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVGADPMLM 114
            MELDYL+DFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLK+NCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVGADPML+
Sbjct:    1 MELDYLLDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKINCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVGADPMLI 114
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3SI30|A0A0S3SI30_PHAAN (EF-hand domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G121700 PE=4 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 4.844e-73
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0 
Query:    1 MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVGADPMLM 114
            MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLK+NCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVG DPMLM
Sbjct:    1 MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKINCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVGGDPMLM 114
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6NCH0|A0A4D6NCH0_VIGUN (Centrin-2 OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g1078 PE=4 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 9.566e-73
Identity = 110/114 (96.49%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVGADPMLM 114
            MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLK+NCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPK+C+TQVGADPML+
Sbjct:    1 MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKINCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKICTTQVGADPMLI 114
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9ULY0|A0A0L9ULY0_PHAAN (EF-hand domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g131100 PE=4 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.985e-72
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 0 
Query:    1 MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVGADPMLM 114
            MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLK+NCYLLGLDVRDD LVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVG DPMLM
Sbjct:    1 MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKINCYLLGLDVRDDVLVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVGGDPMLM 114
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86T9U3|A0AA86T9U3_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS17002 PE=4 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.936e-68
Identity = 106/114 (92.98%), Postives = 110/114 (96.49%), Query Frame = 0 
Query:    1 MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVGADPMLM 114
            M+LDYL+DFEDYFPSMIARMGAEGFIGELC+GFRLLMDVNKGLITFESLKMNCYLLGLDVRDDEL  MLMEGDLDGDGAL+QMEFCILMFRLSPCLMDSPKMCSTQV AD MLM
Sbjct:    1 MDLDYLLDFEDYFPSMIARMGAEGFIGELCSGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELACMLMEGDLDGDGALNQMEFCILMFRLSPCLMDSPKMCSTQVRADHMLM 114
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8KLA7|A0A8B8KLA7_ABRPR (Calcium-binding protein KRP1-like OS=Abrus precatorius OX=3816 GN=LOC113856122 PE=4 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.203e-63
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 0 
Query:    1 MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVGADPMLM 114
            MELDY +DFEDYFPSMIAR+GAEGFIGELC+GFRLLMDVNKGLITFESLKMNC+LLGLDVRDDELV MLMEGDLDGDGALSQMEFCILMFRLSPCLMD+PKM  TQ G+DPMLM
Sbjct:    1 MELDYFLDFEDYFPSMIARLGAEGFIGELCHGFRLLMDVNKGLITFESLKMNCHLLGLDVRDDELVCMLMEGDLDGDGALSQMEFCILMFRLSPCLMDAPKM-HTQ-GSDPMLM 112
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S2XGF5|A0A1S2XGF5_CICAR (Calcium-binding protein KRP1-like OS=Cicer arietinum OX=3827 GN=LOC101495375 PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.344e-62
Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = 0 
Query:    1 MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQVGADPMLM 114
            MELD+ MDFEDYFPSMI R+GAEGFIGELCNGFRLLMDVNKG+ITFESLKMNC++LGL+VRDDELV MLMEGDLDGDGAL+QMEFCILMFRLSPCLMD PKMC+ Q G DP+LM
Sbjct:    1 MELDFGMDFEDYFPSMITRLGAEGFIGELCNGFRLLMDVNKGVITFESLKMNCFMLGLEVRDDELVCMLMEGDLDGDGALNQMEFCILMFRLSPCLMDGPKMCTHQ-GVDPILM 113
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2Z6PD82|A0A2Z6PD82_TRISU (EF-hand domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_101200 PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.466e-62
Identity = 99/116 (85.34%), Postives = 105/116 (90.52%), Query Frame = 0 
Query:    1 MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCS--TQVGADPMLM 114
            MELD +MDFEDYFPSM+AR GAEGFI ELCNGFRLLMDVNKGLITFESLKMNC +LGL+VRDDELV MLMEGDLDGDGAL+QMEFCILMFRLSPCLMD PKMC+  T  G DPMLM
Sbjct:    1 MELDLVMDFEDYFPSMVARFGAEGFISELCNGFRLLMDVNKGLITFESLKMNCSMLGLEVRDDELVCMLMEGDLDGDGALNQMEFCILMFRLSPCLMDGPKMCNTITHQGVDPMLM 116
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A371GSD7|A0A371GSD7_MUCPR (Calcium-binding protein PBP1 (Fragment) OS=Mucuna pruriens OX=157652 GN=PBP1 PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.447e-61
Identity = 95/104 (91.35%), Postives = 101/104 (97.12%), Query Frame = 0 
Query:    1 MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCS 104
            MELDYL+DFEDYFPSMI+R+GAEGFIGELC+GFRLLMDVNKGLITFESLKMNCYLLGL+VRDDEL  MLMEGDLDGDGALSQMEFCILMFRLSPCLMD PKMC+
Sbjct:    1 MELDYLLDFEDYFPSMISRLGAEGFIGELCSGFRLLMDVNKGLITFESLKMNCYLLGLEVRDDELACMLMEGDLDGDGALSQMEFCILMFRLSPCLMDGPKMCT 104
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9LSQ6|PBP1_ARATH (Calcium-binding protein PBP1 OS=Arabidopsis thaliana OX=3702 GN=PBP1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.387e-32
Identity = 57/101 (56.44%), Postives = 77/101 (76.24%), Query Frame = 0 
Query:    9 FEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNC-YLLGL-DVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQV 107
            F+D+FP+M  ++G EG I E+C GF LLMD +KG+ITFESL+ N   +LGL D+ DD++  M+ EGD D DGAL+QMEFC+LMFRLSP LM++ +   T+V
Sbjct:   19 FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVRYMINEGDFDRDGALNQMEFCVLMFRLSPELMEASRCVVTEV 119
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|O81831|CARP1_ARATH (Calcium-binding protein KRP1 OS=Arabidopsis thaliana OX=3702 GN=KRP1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 6.534e-32
Identity = 58/102 (56.86%), Postives = 76/102 (74.51%), Query Frame = 0 
Query:    8 DFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMN-CYLLGL-DVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQV 107
            +F D+ P+M   +G EG IGELCNGF LLMD  KG+ITFESL+ N   +LGL D+ D+++  M+ EGD D DGAL+QMEFC+LMFRLSP LM++ +   T+V
Sbjct:   18 NFHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGLGDLTDEDVRCMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEASRCLVTEV 119
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9ZPX9|KIC_ARATH (Calcium-binding protein KIC OS=Arabidopsis thaliana OX=3702 GN=KIC PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 9.830e-26
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 0 
Query:    9 FEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLD-VRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMD 98
            +ED  P M  +M  E F+ ELC GF LL D  + LIT ESL+ N  +LG++ +  ++  GM+ EGDLDGDGAL+Q EFC+LM RLSP +M+
Sbjct:   22 YEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMME 112
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|P43645|CATR_SPESI (Caltractin (Fragment) OS=Spermatozopsis similis OX=3192 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.739e-12
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 0 
Query:    7 MDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLS 93
            +DFE++   M A+MG      E+   FRL  D   G ITF++LK     LG ++ D+E+  M+ E D DGDG +++ EF  +M + S
Sbjct:   60 IDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDQTGKITFKNLKRVAKELGENLTDEEIQEMIDEADRDGDGEINEEEFFRIMKKTS 146
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|P43646|CATR_TETST (Caltractin (Fragment) OS=Tetraselmis striata OX=3165 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 6.525e-12
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 0 
Query:    7 MDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLS 93
            +DFE++   M A+MG      E+   FRL  D   G I+F++LK     LG ++ D+EL  M+ E D DGDG +++ EF  +M + S
Sbjct:   60 IDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIMKKTS 146
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q06827|CATR_SCHDU (Caltractin OS=Scherffelia dubia OX=3190 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 6.960e-12
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 0 
Query:    7 MDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLS 93
            +DFE++   M A+MG      E+   FRL  D   G I+F++LK     LG ++ D+EL  M+ E D DGDG +++ EF  +M + S
Sbjct:   80 IDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIMKKTS 166
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q2TBN3|CETN2_BOVIN (Centrin-2 OS=Bos taurus OX=9913 GN=CETN2 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 9.080e-11
Identity = 30/87 (34.48%), Postives = 48/87 (55.17%), Query Frame = 0 
Query:    7 MDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLS 93
            M+F D+   M  +M  +    E+   F+L  D   G I+F++LK     LG ++ D+EL  M+ E D DGDG +++ EF  +M + S
Sbjct:   84 MNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLSDEELQEMIDEADRDGDGEVNEQEFLRIMKKTS 170
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9R1K9|CETN2_MOUSE (Centrin-2 OS=Mus musculus OX=10090 GN=Cetn2 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.041e-10
Identity = 30/87 (34.48%), Postives = 48/87 (55.17%), Query Frame = 0 
Query:    7 MDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLS 93
            M+F D+   M  +M  +    E+   F+L  D   G I+F++LK     LG ++ D+EL  M+ E D DGDG +++ EF  +M + S
Sbjct:   84 MNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVNEQEFLRIMKKTS 170
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|P41208|CETN2_HUMAN (Centrin-2 OS=Homo sapiens OX=9606 GN=CETN2 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.132e-10
Identity = 31/87 (35.63%), Postives = 48/87 (55.17%), Query Frame = 0 
Query:    7 MDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLS 93
            M+F D+   M  +M  +    E+   F+L  D   G I+F++LK     LG ++ D+EL  M+ E D DGDG +S+ EF  +M + S
Sbjct:   84 MNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMKKTS 170
[Close]
BLAST of Vigst.07G088900.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|P54213|CATR_DUNSA (Caltractin OS=Dunaliella salina OX=3046 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.679e-10
Identity = 31/87 (35.63%), Postives = 48/87 (55.17%), Query Frame = 0 
Query:    7 MDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLS 93
            +DFE++   M ++MG      E+   F+L  D N G IT ++LK     LG ++ D+EL  M  E D +GDG + + EF  +M + S
Sbjct:   81 IDFEEFLQMMTSKMGERDSREEIIKAFKLFDDDNTGFITLKNLKRVAKELGENLTDEELQEMTDEADRNGDGQIDEDEFYRIMKKTS 167
[Close]
BLAST of Vigst.07G088900.01 vs. Araport11
Match: | (Symbols: PBP1 | pinoid-binding protein 1 | chr5:22121458-22121841 FORWARD LENGTH=127)

HSP 1 Score: 113.62 bits (283), Expect = 1.443e-33
Identity = 57/101 (56.44%), Postives = 77/101 (76.24%), Query Frame = 0 
Query:    9 FEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNC-YLLGL-DVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQV 107
            F+D+FP+M  ++G EG I E+C GF LLMD +KG+ITFESL+ N   +LGL D+ DD++  M+ EGD D DGAL+QMEFC+LMFRLSP LM++ +   T+V
Sbjct:   19 FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVRYMINEGDFDRDGALNQMEFCVLMFRLSPELMEASRCVVTEV 119
[Close]
BLAST of Vigst.07G088900.01 vs. Araport11
Match: | (Symbols: CMI1 | Ca2+-dependent modulator of ICR1 | chr4:13663770-13664162 REVERSE LENGTH=130)

HSP 1 Score: 112.079 bits (279), Expect = 6.797e-33
Identity = 58/102 (56.86%), Postives = 76/102 (74.51%), Query Frame = 0 
Query:    8 DFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMN-CYLLGL-DVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSPKMCSTQV 107
            +F D+ P+M   +G EG IGELCNGF LLMD  KG+ITFESL+ N   +LGL D+ D+++  M+ EGD D DGAL+QMEFC+LMFRLSP LM++ +   T+V
Sbjct:   18 NFHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGLGDLTDEDVRCMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEASRCLVTEV 119
[Close]
BLAST of Vigst.07G088900.01 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:19136070-19136477 FORWARD LENGTH=135)

HSP 1 Score: 96.6709 bits (239), Expect = 1.021e-26
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 0 
Query:    9 FEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLD-VRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMD 98
            +ED  P M  +M  E F+ ELC GF LL D  + LIT ESL+ N  +LG++ +  ++  GM+ EGDLDGDGAL+Q EFC+LM RLSP +M+
Sbjct:   22 YEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMME 112
[Close]
BLAST of Vigst.07G088900.01 vs. Araport11
Match: | (Symbols: CEN2, CML19 | centrin 2, Calmodulin-like 19 | chr4:17444421-17445380 FORWARD LENGTH=167)

HSP 1 Score: 48.9062 bits (115), Expect = 4.299e-8
Identity = 27/87 (31.03%), Postives = 45/87 (51.72%), Query Frame = 0 
Query:    7 MDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLS 93
            +DF+++   M  + G    I EL   F+++   N G I+   +KM    LG +  D+++  M+ E D D DG ++  EF  +M R S
Sbjct:   79 IDFDEFVHMMTTKFGERDSIDELSKAFKIIDHDNNGKISPRDIKMIAKELGENFTDNDIEEMIEEADRDKDGEVNLEEFMKMMKRTS 165
[Close]
BLAST of Vigst.07G088900.01 vs. Araport11
Match: | (Symbols: CEN2, CML19 | centrin 2, Calmodulin-like 19 | chr4:17444315-17445380 FORWARD LENGTH=171)

HSP 1 Score: 48.9062 bits (115), Expect = 4.704e-8
Identity = 27/87 (31.03%), Postives = 45/87 (51.72%), Query Frame = 0 
Query:    7 MDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLS 93
            +DF+++   M  + G    I EL   F+++   N G I+   +KM    LG +  D+++  M+ E D D DG ++  EF  +M R S
Sbjct:   83 IDFDEFVHMMTTKFGERDSIDELSKAFKIIDHDNNGKISPRDIKMIAKELGENFTDNDIEEMIEEADRDKDGEVNLEEFMKMMKRTS 169
The following BLAST results are available for this feature:
BLAST of Vigst.07G088900.01 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S3W1Q8|A0A1S3W1Q8_VIGRR5.822e-7499.12Calcium-binding protein PBP1-like OS=Vigna radiata... [more]
tr|V7BX75|V7BX75_PHAVU4.844e-7397.37EF-hand domain-containing protein OS=Phaseolus vul... [more]
tr|A0A0S3SI30|A0A0S3SI30_PHAAN4.844e-7398.25EF-hand domain-containing protein OS=Vigna angular... [more]
tr|A0A4D6NCH0|A0A4D6NCH0_VIGUN9.566e-7396.49Centrin-2 OS=Vigna unguiculata OX=3917 GN=DEO72_LG... [more]
tr|A0A0L9ULY0|A0A0L9ULY0_PHAAN3.985e-7297.37EF-hand domain-containing protein OS=Phaseolus ang... [more]
tr|A0AA86T9U3|A0AA86T9U3_9FABA3.936e-6892.98Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|A0A8B8KLA7|A0A8B8KLA7_ABRPR1.203e-6390.35Calcium-binding protein KRP1-like OS=Abrus precato... [more]
tr|A0A1S2XGF5|A0A1S2XGF5_CICAR3.344e-6285.96Calcium-binding protein KRP1-like OS=Cicer arietin... [more]
tr|A0A2Z6PD82|A0A2Z6PD82_TRISU4.466e-6285.34EF-hand domain-containing protein OS=Trifolium sub... [more]
tr|A0A371GSD7|A0A371GSD7_MUCPR3.447e-6191.35Calcium-binding protein PBP1 (Fragment) OS=Mucuna ... [more]
back to top
BLAST of Vigst.07G088900.01 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|Q9LSQ6|PBP1_ARATH1.387e-3256.44Calcium-binding protein PBP1 OS=Arabidopsis thalia... [more]
sp|O81831|CARP1_ARATH6.534e-3256.86Calcium-binding protein KRP1 OS=Arabidopsis thalia... [more]
sp|Q9ZPX9|KIC_ARATH9.830e-2651.65Calcium-binding protein KIC OS=Arabidopsis thalian... [more]
sp|P43645|CATR_SPESI1.739e-1237.93Caltractin (Fragment) OS=Spermatozopsis similis OX... [more]
sp|P43646|CATR_TETST6.525e-1237.93Caltractin (Fragment) OS=Tetraselmis striata OX=31... [more]
sp|Q06827|CATR_SCHDU6.960e-1237.93Caltractin OS=Scherffelia dubia OX=3190 PE=1 SV=1[more]
sp|Q2TBN3|CETN2_BOVIN9.080e-1134.48Centrin-2 OS=Bos taurus OX=9913 GN=CETN2 PE=2 SV=1[more]
sp|Q9R1K9|CETN2_MOUSE1.041e-1034.48Centrin-2 OS=Mus musculus OX=10090 GN=Cetn2 PE=1 S... [more]
sp|P41208|CETN2_HUMAN1.132e-1035.63Centrin-2 OS=Homo sapiens OX=9606 GN=CETN2 PE=1 SV... [more]
sp|P54213|CATR_DUNSA1.679e-1035.63Caltractin OS=Dunaliella salina OX=3046 PE=2 SV=1[more]
back to top
BLAST of Vigst.07G088900.01 vs. Araport11
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs arabidopsis Araport11)
Total hits: 5
Match NameE-valueIdentityDescription
|1.443e-3356.44Symbols: PBP1 | pinoid-binding protein 1 | chr5:22... [more]
|6.797e-3356.86Symbols: CMI1 | Ca2+-dependent modulator of ICR1 |... [more]
|1.021e-2651.65Symbols: no symbol available | no full name availa... [more]
|4.299e-831.03Symbols: CEN2, CML19 | centrin 2, Calmodulin-like ... [more]
|4.704e-831.03Symbols: CEN2, CML19 | centrin 2, Calmodulin-like ... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vigna stipulacea acc. JP252948 genome v1.0
Date Performed: 2024-08-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13833EF-hand_8coord: 41..91
e-value: 3.7E-9
score: 47.5
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 60..95
score: 8.320626
NoneNo IPR availableGENE3D1.10.238.10coord: 7..109
e-value: 5.7E-15
score: 57.2
IPR044205Calcium-binding protein KIC/PBP1/KRP1PANTHERPTHR47319CALCIUM-BINDING PROTEIN KICcoord: 7..105
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 6..89

Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigStip.JP252948.2.0.Vigst.07G088900.01 ID=drVigStip.JP252948.2.0.Vigst.07G088900.01; Name=Vigst.07G088900.01; organism=Vigna stipulacea; type=mRNA; length=345bp
ATGGAACTGGACTACCTTATGGACTTCGAGGACTACTTCCCGTCGATGAT
TGCGCGCATGGGGGCAGAAGGGTTCATTGGAGAACTCTGCAACGGGTTTC
GCTTGCTGATGGACGTGAACAAGGGTCTGATCACCTTTGAGAGCTTGAAG
ATGAACTGTTACTTGCTAGGTTTGGATGTGAGAGACGATGAACTGGTGGG
CATGCTAATGGAAGGTGATTTGGACGGAGATGGTGCTCTTAGTCAAATGG
AGTTCTGCATTCTCATGTTTAGGCTCAGTCCTTGTTTGATGGATTCACCT
AAAATGTGCAGCACTCAGGTTGGTGCAGATCCCATGCTCATGTAG
back to top

protein sequence of drVigStip.JP252948.2.0.Vigst.07G088900.01

>drVigStip.JP252948.2.0.Vigst.07G088900.01 ID=drVigStip.JP252948.2.0.Vigst.07G088900.01; Name=drVigStip.JP252948.2.0.Vigst.07G088900.01; organism=Vigna stipulacea; type=polypeptide; length=115bp
MELDYLMDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLK
MNCYLLGLDVRDDELVGMLMEGDLDGDGALSQMEFCILMFRLSPCLMDSP
KMCSTQVGADPMLM*
back to top

mRNA from alignment at Chr07:11135845..11136651+

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigStip.JP252948.2.0.Vigst.07G088900.01 ID=drVigStip.JP252948.2.0.Vigst.07G088900.01; Name=Vigst.07G088900.01; organism=Vigna stipulacea; type=mRNA; length=807bp; location=Sequence derived from: Chr07:11135845..11136651+ (Vigna stipulacea
AAAACACATAAAAAGGGAAATATTCAGAATCAGAAATGTGTGTTGGCTGT
TTGTGATTATTTCAGTATATAAACAAATAGATGAGTCTTCTATGAGAAGC
TACCATTATCCTCTGCACACAGTGACTAACAGAAGGAAGAAGGTGTTCTT
GAGATTGTAGCCGACAGATTCCTGGGAAGATGGAACTGGACTACCTTATG
GACTTCGAGGACTACTTCCCGTCGATGATTGCGCGCATGGGGGCAGAAGG
GTTCATTGGAGAACTCTGCAACGGGTTTCGCTTGCTGATGGACGTGAACA
AGGGTCTGATCACCTTTGAGAGCTTGAAGATGAACTGTTACTTGCTAGGT
TTGGATGTGAGAGACGATGAACTGGTGGGCATGCTAATGGAAGGTGATTT
GGACGGAGATGGTGCTCTTAGTCAAATGGAGTTCTGCATTCTCATGTTTA
GGCTCAGTCCTTGTTTGATGGATTCACCTAAAATGTGCAGCACTCAGGTT
GGTGCAGATCCCATGCTCATGTAGAATGTAAAAAAACTGTTACTTTTACT
CTGTTACTATTACTCTTGACACTCCTTCTTTTTACCTACTTCTCTCCTTC
TTCCGTTTTTCTCTTTCTCAGTTACATAGTTAACCTAAGAGAACTCAGAG
AAGAAGAATTCATGTTGTTGTTGTGACTTTCATAAATCTTAATTAAGTAT
GTTATTCAATGTTCTCTCCACAACATAACAATGTCCATCCATCCATCTGT
AATTTCTCTCTTTCTCTCTCTCTCTATATAAAGTAACGTTAACGAATGAT
TGCCACA
back to top

Coding sequence (CDS) from alignment at Chr07:11135845..11136651+

>drVigStip.JP252948.2.0.Vigst.07G088900.01 ID=drVigStip.JP252948.2.0.Vigst.07G088900.01; Name=Vigst.07G088900.01; organism=Vigna stipulacea; type=CDS; length=345bp; location=Sequence derived from: Chr07:11135845..11136651+ (Vigna stipulacea
ATGGAACTGGACTACCTTATGGACTTCGAGGACTACTTCCCGTCGATGAT
TGCGCGCATGGGGGCAGAAGGGTTCATTGGAGAACTCTGCAACGGGTTTC
GCTTGCTGATGGACGTGAACAAGGGTCTGATCACCTTTGAGAGCTTGAAG
ATGAACTGTTACTTGCTAGGTTTGGATGTGAGAGACGATGAACTGGTGGG
CATGCTAATGGAAGGTGATTTGGACGGAGATGGTGCTCTTAGTCAAATGG
AGTTCTGCATTCTCATGTTTAGGCTCAGTCCTTGTTTGATGGATTCACCT
AAAATGTGCAGCACTCAGGTTGGTGCAGATCCCATGCTCATGTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR044205KIC/PBP1/KRP1
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding