Vigst.08G202400.01

Transcript Overview
NameVigst.08G202400.01
Unique NamedrVigStip.JP252948.2.0.Vigst.08G202400.01
TypemRNA
OrganismVigna stipulacea ()
Sequence length495
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:30294542..30296904 -Vigna stipulacea acc. JP252948 genome v2.a1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vstvvaR747Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvvaR802Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvstL076Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvstL346Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvstL351Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvstL434Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL0796Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL1024Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL1357Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carvstL098Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
pvvstL081Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
carvstL270Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
psvstL262Pisum sativum Cameor genome v1aPisum sativum
pvvstL219Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
carvstL383Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
psvstL659Pisum sativum Cameor genome v1aPisum sativum
psvstL691Pisum sativum Cameor genome v1aPisum sativum
psvstL708Pisum sativum Cameor genome v1aPisum sativum
pvvstL692Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vstvstL256Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstL241Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvstL163Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvstL283Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vstvstL344Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vssvstL308Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvstL492Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvstL675Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvstL694Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vssvstL656Vicia sativa cv. Studenica genome v1.0Vicia sativa
vstvuR549Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vstvuR595Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vssvstL903Vicia sativa cv. Studenica genome v1.0Vicia sativa
vstvumR566Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvumR619Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvumR635Vigna umbellata FF25 genome v1.0Vigna umbellata
vasvstL404Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL524Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL635Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL653Vigna angularis cv. Shumari genome v1.a1Vigna angularis

Orthologs
Gene/TranscriptAssemblySpecies
jg1214.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_02599Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.001G184700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vum_04G02453.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun07g065000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va03G074030.4Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun01g167800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
XM_058915223.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vfaba.Hedin2.R1.3g045080.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Va02G018500.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Hedin2.R1.5g144400.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.007G224900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg31887.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
XM_058884825.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigan.04G338300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigan.08G289800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
evm.Ca_v2.0_10364Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
rna-XM_014639697.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_014656700.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.Ca_v2.0_07759Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigst.04G218500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigst.08G202400drVigStip.JP252948.2.0.Vigst.08G202400Vigna stipulaceagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
nbis-exon-112805drVigStip.JP252948.2.0.nbis-exon-112805Vigna stipulaceaexon
nbis-exon-112806drVigStip.JP252948.2.0.nbis-exon-112806Vigna stipulaceaexon
nbis-exon-112807drVigStip.JP252948.2.0.nbis-exon-112807Vigna stipulaceaexon
nbis-exon-112808drVigStip.JP252948.2.0.nbis-exon-112808Vigna stipulaceaexon
nbis-exon-112809drVigStip.JP252948.2.0.nbis-exon-112809Vigna stipulaceaexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
three_prime_utr-16014drVigStip.JP252948.2.0.three_prime_utr-16014Vigna stipulaceathree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-108925drVigStip.JP252948.2.0.cds-108925Vigna stipulaceaCDS
cds-108924drVigStip.JP252948.2.0.cds-108924Vigna stipulaceaCDS
cds-108923drVigStip.JP252948.2.0.cds-108923Vigna stipulaceaCDS
cds-108922drVigStip.JP252948.2.0.cds-108922Vigna stipulaceaCDS
cds-108921drVigStip.JP252948.2.0.cds-108921Vigna stipulaceaCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
five_prime_utr-16982drVigStip.JP252948.2.0.five_prime_utr-16982Vigna stipulaceafive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigStip.JP252948.2.0.Vigst.08G202400.01drVigStip.JP252948.2.0.Vigst.08G202400.01Vigna stipulaceapolypeptide
drVigStip.JP252948.2.0.Vigst.08G202400.01drVigStip.JP252948.2.0.Vigst.08G202400.01-proteinVigna stipulaceapolypeptide


Homology
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86SWH0|A0AA86SWH0_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS21898 PE=4 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.905e-113
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
            MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3ST61|A0A0S3ST61_PHAAN (TRASH domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G289800 PE=3 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.905e-113
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
            MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9TWP3|A0A0L9TWP3_PHAAN (TRASH domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g074900 PE=3 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.905e-113
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
            MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3V1G5|A0A1S3V1G5_VIGRR (60S ribosomal protein L24 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770867 PE=3 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.905e-113
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
            MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy TrEMBL (2024)
Match: tr|V7BJP7|V7BJP7_PHAVU (TRASH domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G224900g PE=3 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 3.903e-112
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
            MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A371GUM6|A0A371GUM6_MUCPR (60S ribosomal protein L24 (Fragment) OS=Mucuna pruriens OX=157652 GN=RPL24 PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 3.329e-107
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 0 
Query:    5 TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
            TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAK+QKSQGK  VSKGAAPKGPKLGGGGGKR
Sbjct:   27 TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKVQKSQGKSNVSKGAAPKGPKLGGGGGKR 186
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6N2KDD5|A0A6N2KDD5_SALVM (60S RIBOSOMAL PROTEIN L24-LIKE OS=Salix viminalis OX=40686 GN=OIU85_013408 PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 1.860e-101
Identity = 149/164 (90.85%), Postives = 155/164 (94.51%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
            MVLKTELCRFSGAKIYPGKGIRF+R DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIA E +KKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEK+AKKAEV AK+QK   KG++ KGAAPK PKLGGGGGKR
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAETIKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKRAKKAEVMAKVQKGS-KGSLPKGAAPKAPKLGGGGGKR 163
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9Q0ZV99|A0A9Q0ZV99_SALPP (60S RIBOSOMAL PROTEIN L24 OS=Salix purpurea OX=77065 GN=OIU79_029183 PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 4.623e-101
Identity = 149/164 (90.85%), Postives = 154/164 (93.90%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
            MVLKTELCRFSGAKIYPGKGIRF+R DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIA E +KKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEK+AKKAEV AK+QK   KG + KGAAPK PKLGGGGGKR
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAETIKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKRAKKAEVMAKVQKGS-KGGLPKGAAPKAPKLGGGGGKR 163
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8MEZ3|A0A8B8MEZ3_ABRPR (60S ribosomal protein L24-like OS=Abrus precatorius OX=3816 GN=LOC113872740 PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 4.158e-99
Identity = 144/151 (95.36%), Postives = 147/151 (97.35%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAA 151
            MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRR TK+PYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREIKERVKKTKDEK+AKKAEVQAKLQKSQGK  VSK AA
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKRPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERVKKTKDEKRAKKAEVQAKLQKSQGKSNVSKAAA 151
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A5N5KQH1|A0A5N5KQH1_9ROSI (TRASH domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_019116 PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 1.590e-98
Identity = 145/161 (90.06%), Postives = 152/161 (94.41%), Query Frame = 0 
Query:    4 KTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
            +TELCRFSGAKIYPGKGIRF+R DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIA E +KKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEK+AKKAEV AK+QK   KG++ KGAAPK PKLGGGGGKR
Sbjct:    7 RTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAETIKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKRAKKAEVMAKVQKGS-KGSLPKGAAPKAPKLGGGGGKR 166
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9FUL4|RL24_PRUAV (Large ribosomal subunit protein eL24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 2.874e-91
Identity = 147/160 (91.88%), Postives = 153/160 (95.62%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAA-PKGPKLGG 159
            MVLKTELCRFSGAKIYPGKGIRF+R DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREIKER+KKTKDEKKAKKAEV  K QKSQGKG+++KG A PKGPKLGG
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEV-TKSQKSQGKGSIAKGGAQPKGPKLGG 159
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|O65743|RL24_CICAR (Large ribosomal subunit protein eL24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 6.446e-88
Identity = 139/150 (92.67%), Postives = 144/150 (96.00%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGA 150
            MVLKTELCRFSGAKIYPG+GIRF+RGDSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQHKKD AQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKER+KKTKDEKKAKKAEV +K QKSQGKG V KGA
Sbjct:    1 MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVASKAQKSQGKGNVQKGA 150
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q42347|RL241_ARATH (Large ribosomal subunit protein eL24z OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 5.112e-85
Identity = 133/157 (84.71%), Postives = 141/157 (89.81%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKL 157
            MVLKTELCRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKER+KKTKDEKKAKK E  +K QKSQ KG + K AAPK  K+
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKM 157
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|P50888|RL24_HORVU (Large ribosomal subunit protein eL24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.741e-78
Identity = 132/147 (89.80%), Postives = 135/147 (91.84%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQ-GKGAV 146
            MVLKTELCRFSG KIYPGKGIRF+R DSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQHKKDI  EA KKRRR TKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKER+KKTKDEKKAKKAEV  K QKSQ GKGAV
Sbjct:    1 MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEV-TKSQKSQGGKGAV 146
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|P38666|RL242_ARATH (Large ribosomal subunit protein eL24y OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 4.490e-78
Identity = 123/139 (88.49%), Postives = 129/139 (92.81%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQK 139
            MVLKTELCRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKER+KKTKDEKKAKK E  +K QK
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKVEFASKQQK 139
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|P38665|RL24_KLULA (Large ribosomal subunit protein eL24 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=RPL24 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.330e-35
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 0 
Query:    3 LKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQA----KLQKSQGKGAVSKGAA 151
            +K E+  FSGAKIYPG+G  FVRGDS++F F +SK    FH R  P ++ WT +YR+ HKK I +E  +KR R + K   R++VGA+LE+I+++R+ KPEVR A R+   +  KE+ K  K  +K++KA++ A    K+ K Q KGA  K AA
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVARKRTRKSVKA-QRAVVGASLELIKERRSLKPEVRKAQRDEKKKADKEKKKADKAARKSEKAKLAAAQGSKVSKQQAKGAFQKVAA 152
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6BNC2|RL24_DEBHA (Large ribosomal subunit protein eL24 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=RPL24 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.039e-33
Identity = 56/108 (51.85%), Postives = 79/108 (73.15%), Query Frame = 0 
Query:    3 LKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREA 110
            +K EL  FSG KIYPG+G  FVRGDS++F F +SK    FH R  P +++WT +YR+QHKK I++E+ K+R R T K   R+IVGA+LE+I+++R++KP  R AAR+ 
Sbjct:    1 MKVELDSFSGTKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRISWTVLYRRQHKKGISEESAKRRTRKTVKN-QRAIVGASLELIKERRSQKPSDRKAARDV 107
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q5A6A1|RL24A_CANAL (Large ribosomal subunit protein eL24 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RPL24A PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.318e-33
Identity = 55/108 (50.93%), Postives = 80/108 (74.07%), Query Frame = 0 
Query:    3 LKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREA 110
            +K E+  FSG+KIYPG+G  FVRGDS++F F +SK    F  R  P +++WT +YR+ HKK I++EA KKR R T K + R+IVGA+LE+I+++R++KP  R AAR++
Sbjct:    1 MKIEVDSFSGSKIYPGRGTLFVRGDSKIFRFQSSKSASLFQQRKNPRRISWTVLYRRHHKKGISEEAAKKRTRKTVK-HQRAIVGASLELIKERRSQKPSDRKAARDS 107
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q752U6|RL24_EREGS (Large ribosomal subunit protein eL24 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=RPL24 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.129e-33
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 0 
Query:    3 LKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAR 108
            +K E+  FSGAKIYPG+G  FVRGDS+VF F +SK    FH R  P ++ WT +YR+ HKK I +E  KKR R T K   R++VGA+LE+I+++R+ KPE+R A R
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKVFRFHSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAVVGASLELIKERRSLKPEIRKAKR 105
[Close]
BLAST of Vigst.08G202400.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|P24000|RL24B_YEAST (Large ribosomal subunit protein eL24B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL24B PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.352e-32
Identity = 75/153 (49.02%), Postives = 97/153 (63.40%), Query Frame = 0 
Query:    3 LKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALR---EIKERVKKTKDEKKAKKAEVQ-AKLQKSQGKGAVSKGAA 151
            +K E+  FSGAKIYPG+G  FVRGDS++F F NSK    F  R  P ++ WT ++RK HKK I +E  KKR R T K   R I GA+L++I+++R+ KPEVR A RE  L+   E K   K  +  +KAK A VQ +K+ K Q KGA  K AA
Sbjct:    1 MKVEVDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKRAEKAARKAEKAKSAGVQGSKVSKQQAKGAFQKVAA 152
[Close]
BLAST of Vigst.08G202400.01 vs. Araport11
Match: | (Symbols: RPL24A | ribosomal protein L24 | chr2:15350548-15351819 REVERSE LENGTH=164)

HSP 1 Score: 249.98 bits (637), Expect = 5.344e-86
Identity = 133/157 (84.71%), Postives = 141/157 (89.81%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKL 157
            MVLKTELCRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKER+KKTKDEKKAKK E  +K QKSQ KG + K AAPK  K+
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKM 157
[Close]
BLAST of Vigst.08G202400.01 vs. Araport11
Match: | (Symbols: RPL24B, RPL24, STV1 | RIBOSOMAL PROTEIN L24, SHORT VALVE1 | chr3:19660749-19661912 REVERSE LENGTH=163)

HSP 1 Score: 232.261 bits (591), Expect = 4.692e-79
Identity = 123/139 (88.49%), Postives = 129/139 (92.81%), Query Frame = 0 
Query:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQK 139
            MVLKTELCRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKER+KKTKDEKKAKK E  +K QK
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKVEFASKQQK 139
[Close]
BLAST of Vigst.08G202400.01 vs. Araport11
Match: | (Symbols: RPL24C | Ribosomal protein L24C | chr2:18501034-18502128 REVERSE LENGTH=159)

HSP 1 Score: 76.2554 bits (186), Expect = 7.219e-18
Identity = 51/148 (34.46%), Postives = 77/148 (52.03%), Query Frame = 0 
Query:    3 LKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEK-KAKKAEVQAKLQKSQGKGA 145
            ++ E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H KD+ ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R+K  K +K      E+   +   Q  GA
Sbjct:    1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENRLKPNKQKKLNDDMKELDQNIHMVQAPGA 139
[Close]
BLAST of Vigst.08G202400.01 vs. Araport11
Match: | (Symbols: RPL24C | Ribosomal protein L24C | chr2:18501034-18502128 REVERSE LENGTH=159)

HSP 1 Score: 76.2554 bits (186), Expect = 7.219e-18
Identity = 51/148 (34.46%), Postives = 77/148 (52.03%), Query Frame = 0 
Query:    3 LKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEK-KAKKAEVQAKLQKSQGKGA 145
            ++ E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H KD+ ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R+K  K +K      E+   +   Q  GA
Sbjct:    1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENRLKPNKQKKLNDDMKELDQNIHMVQAPGA 139
The following BLAST results are available for this feature:
BLAST of Vigst.08G202400.01 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0AA86SWH0|A0AA86SWH0_9FABA4.905e-113100.00Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|A0A0S3ST61|A0A0S3ST61_PHAAN4.905e-113100.00TRASH domain-containing protein OS=Vigna angularis... [more]
tr|A0A0L9TWP3|A0A0L9TWP3_PHAAN4.905e-113100.00TRASH domain-containing protein OS=Phaseolus angul... [more]
tr|A0A1S3V1G5|A0A1S3V1G5_VIGRR4.905e-113100.0060S ribosomal protein L24 OS=Vigna radiata var. ra... [more]
tr|V7BJP7|V7BJP7_PHAVU3.903e-11299.39TRASH domain-containing protein OS=Phaseolus vulga... [more]
tr|A0A371GUM6|A0A371GUM6_MUCPR3.329e-10798.1360S ribosomal protein L24 (Fragment) OS=Mucuna pru... [more]
tr|A0A6N2KDD5|A0A6N2KDD5_SALVM1.860e-10190.8560S RIBOSOMAL PROTEIN L24-LIKE OS=Salix viminalis ... [more]
tr|A0A9Q0ZV99|A0A9Q0ZV99_SALPP4.623e-10190.8560S RIBOSOMAL PROTEIN L24 OS=Salix purpurea OX=770... [more]
tr|A0A8B8MEZ3|A0A8B8MEZ3_ABRPR4.158e-9995.3660S ribosomal protein L24-like OS=Abrus precatoriu... [more]
tr|A0A5N5KQH1|A0A5N5KQH1_9ROSI1.590e-9890.06TRASH domain-containing protein OS=Salix brachista... [more]
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BLAST of Vigst.08G202400.01 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|Q9FUL4|RL24_PRUAV2.874e-9191.88Large ribosomal subunit protein eL24 OS=Prunus avi... [more]
sp|O65743|RL24_CICAR6.446e-8892.67Large ribosomal subunit protein eL24 OS=Cicer arie... [more]
sp|Q42347|RL241_ARATH5.112e-8584.71Large ribosomal subunit protein eL24z OS=Arabidops... [more]
sp|P50888|RL24_HORVU2.741e-7889.80Large ribosomal subunit protein eL24 OS=Hordeum vu... [more]
sp|P38666|RL242_ARATH4.490e-7888.49Large ribosomal subunit protein eL24y OS=Arabidops... [more]
sp|P38665|RL24_KLULA6.330e-3546.41Large ribosomal subunit protein eL24 OS=Kluyveromy... [more]
sp|Q6BNC2|RL24_DEBHA1.039e-3351.85Large ribosomal subunit protein eL24 OS=Debaryomyc... [more]
sp|Q5A6A1|RL24A_CANAL5.318e-3350.93Large ribosomal subunit protein eL24 OS=Candida al... [more]
sp|Q752U6|RL24_EREGS7.129e-3352.83Large ribosomal subunit protein eL24 OS=Eremotheci... [more]
sp|P24000|RL24B_YEAST1.352e-3249.02Large ribosomal subunit protein eL24B OS=Saccharom... [more]
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BLAST of Vigst.08G202400.01 vs. Araport11
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs arabidopsis Araport11)
Total hits: 4
Match NameE-valueIdentityDescription
|5.344e-8684.71Symbols: RPL24A | ribosomal protein L24 | chr2:153... [more]
|4.692e-7988.49Symbols: RPL24B, RPL24, STV1 | RIBOSOMAL PROTEIN L... [more]
|7.219e-1834.46Symbols: RPL24C | Ribosomal protein L24C | chr2:18... [more]
|7.219e-1834.46Symbols: RPL24C | Ribosomal protein L24C | chr2:18... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna stipulacea acc. JP252948 genome v1.0
Date Performed: 2024-08-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableFUNFAMG3DSA:2.30.170.20:FF:000003coord: 3..64
e-value: 8.3E-39
score: 133.4
NoneNo IPR availableGENE3D6.10.250.1270coord: 69..138
e-value: 8.0E-22
score: 79.2
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 6..58
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3D2.30.170.20Ribosomal protein L24ecoord: 3..64
e-value: 2.6E-33
score: 116.1
IPR000988Large ribosomal subunit protein eL24-relatedPFAMPF01246Ribosomal_L24ecoord: 3..67
e-value: 2.0E-25
score: 100.1
IPR000988Large ribosomal subunit protein eL24-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 4..158
IPR000988Large ribosomal subunit protein eL24-relatedCDDcd00472Ribosomal_L24e_L24coord: 3..56
e-value: 1.35258E-20
score: 77.9978

Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigStip.JP252948.2.0.Vigst.08G202400.01 ID=drVigStip.JP252948.2.0.Vigst.08G202400.01; Name=Vigst.08G202400.01; organism=Vigna stipulacea; type=mRNA; length=495bp
ATGGTTCTCAAGACCGAACTTTGCCGTTTCAGTGGTGCAAAGATCTACCC
TGGGAAAGGCATAAGATTTGTGCGTGGTGATTCTCAGGTCTTCCTCTTTG
CGAACTCCAAATGCAAGAGGTATTTCCACAACCGATTGAAGCCTTCAAAG
CTCACCTGGACTGCCATGTACAGGAAACAGCATAAGAAGGATATTGCCCA
AGAAGCTGTGAAAAAGAGGCGTAGGGCAACAAAGAAACCTTACTCAAGGT
CCATTGTTGGTGCTACACTGGAAGTTATTCAGAAAAAAAGAACAGAGAAA
CCAGAAGTACGCGATGCTGCTAGAGAAGCTGCTCTGCGTGAAATCAAAGA
AAGGGTAAAGAAAACAAAGGATGAGAAGAAGGCAAAGAAGGCTGAAGTTC
AGGCTAAGTTACAAAAGTCCCAAGGCAAAGGTGCTGTCAGCAAGGGTGCT
GCACCCAAAGGACCCAAGCTTGGTGGTGGGGGTGGCAAGCGCTGA
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protein sequence of drVigStip.JP252948.2.0.Vigst.08G202400.01

>drVigStip.JP252948.2.0.Vigst.08G202400.01 ID=drVigStip.JP252948.2.0.Vigst.08G202400.01; Name=drVigStip.JP252948.2.0.Vigst.08G202400.01; organism=Vigna stipulacea; type=polypeptide; length=165bp
MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSK
LTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEK
PEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGA
APKGPKLGGGGGKR*
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mRNA from alignment at Chr08:30294542..30296904-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigStip.JP252948.2.0.Vigst.08G202400.01 ID=drVigStip.JP252948.2.0.Vigst.08G202400.01; Name=Vigst.08G202400.01; organism=Vigna stipulacea; type=mRNA; length=2363bp; location=Sequence derived from: Chr08:30294542..30296904- (Vigna stipulacea
AAAACAAGGCTATTTACTGAGATTGGGGTATACATACATATAAGCAACCA
TTGCATCCTAGGGTTTCTCTACGGGAAAGGAGATTCAGGAGGAGGAACAA
CAGCGACAATGGTTCTCAAGTAGGTTTTTTTCCAAAATCAAGCTCTCTGC
TTTCGTTCATTAATCTTATTCCTTAATTTCATGCACTCTAGATCTCTATT
GAAACGTCTCTCTCTGTTTTCGTTTTTCTTATTCGTGAGAGCACGCGACT
TTTCCTTCTGTCATTGTCGTAGTTGGTAGCTACACCACCTTTTTGGGATG
GGCAAATTGTTAGTGTTGAACAATCGATTTAGGCTGGCTTAAGCGGGATT
GTTTTTTCTATTAGAGATTATTGTTGTTTTGTTATGTATTTGTTAGAAAT
TGACATTGTTGATCGAATAATTTATAATAGAAGAGAGATTTTCAATGTTG
TCATGTTTTGGTTTTTTATGTTTGGCAAATAAAACCTCTAATTTTCTGAA
ATACCGAAGTGTATTTTTTTTGTGATTGTTGATCTGGTGATATGTTTGAA
TGATAAAGGTCATCATTATCATCGTCATGCTCATCATCCCAATGGAATAT
TGAATCGTTTCCGAACTATTTTAGATCGTTTCAGAATTACTGTTTTCTGT
TTGAAACTTTTTCTGCCTGAGATTGTCCTGTTGAGTTAATTGGATGTATT
TATCGGAAATTTGTTATTGTTAGACTAGGTAACAAAACATGGAAAAAAAC
ACATTGCAGTTACTTTTGGTGTTATCTAAGTTTTTGAGGCGCAATATACG
TTGGAGTTTAAAATTTTTCGAACTTCTTATGGAGTTTAAAATTTTTCGAA
CTTTTTATGTATCAGTGCTAGTATAAAGTAATTTGTTTTTTCAAAAAAAT
AAATAAATTGTGTCCACACACACACACAAAATATATATATATATATATAA
ATATATATAAATATATATATATATATAAATATATAAATATATATAAATAT
ATATATATATATATATATATATATATATATTAATCCAAAGTTGTCCTTTA
TGGGACATTGTATTAGTATGCAATGAAGGAATGGTGGTATTTCAAACTAT
AAAACTCTTGTTCACTAATAAAGGGTAGTCTTTTACGGATCATTGTTTTA
GTATGAATTAAATGGTTGGTGATATTTCAAATTATAATCTCTGCACCTAA
ACACTAACTGGTAGCTGATGTTTGTACGTTAGGACCGAACTTTGCCGTTT
CAGTGGTGCAAAGATCTACCCTGGGAAAGGCATAAGATTTGTGCGTGGTG
ATTCTCAGGTAACATAATTGTGCCATTTACTGAATTTTGGGGATGGTATG
GTACCATGTAATGCTGCCTTGATAATTGGTTACTTATGCGAGAGTATTGA
TTTTTAAATGAGTAGGTCTTCCTCTTTGCGAACTCCAAATGCAAGAGGTA
TTTCCACAACCGATTGAAGCCTTCAAAGCTCACCTGGACTGCCATGTACA
GGAAACAGCATAAGAAGGTAATTATGTAAATGAAATTATTTGTATCATAA
CAATCTTGTTATATCTTATTTTAAATTATTACACACTCAAACAGCTTACT
GTATCACTATATTGATGATGATGTTACCTGAGATCTCTATGCACCTGTGT
GTGTTGATTAAAATTTACATTGATTTTCTATCTGTATAATGTAATGTGTA
GGATATTGCCCAAGAAGCTGTGAAAAAGAGGCGTAGGGCAACAAAGAAAC
CTTACTCAAGGTCCATTGTTGGTGCTACACTGGAAGTTATTCAGAAAAAA
AGAACAGAGAAACCAGAAGTACGCGATGCTGCTAGAGAAGCTGCTCTGCG
GTGTGTTTTCTTTTATTTTTAGTTTTCTCATGCTAAAATGCAATGTTGTC
GTTGAGTGATTATATAACAACATCTGTATCTCATCGCATAAAAGTATAGA
ACAGTATCTCATTATCTGAATTTGATATGTTCTGCAGTGAAATCAAAGAA
AGGGTAAAGAAAACAAAGGATGAGAAGAAGGCAAAGAAGGCTGAAGTTCA
GGCTAAGTTACAAAAGTCCCAAGGCAAAGGTGCTGTCAGCAAGGGTGCTG
CACCCAAAGGACCCAAGCTTGGTGGTGGGGGTGGCAAGCGCTGAGTCTAA
AGTTTTGTTCCATTTTGGCCTTGTACTCAAATAGAGTTGTTTTGTTCCTT
TTGTGCTGATATTTTATTTGCTTCATTATTCAAAACCTGTGCTTGGGCTT
ATAGTACCTAGTATTGAATGGAATTTTTTCCTAGAGCTAATTTTAATTTT
ATAAAAATACCTTGTGTTTTTCAAATCTTAGGATGGAATATCACTCTTTA
CCTTTACAACGAA
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Coding sequence (CDS) from alignment at Chr08:30294542..30296904-

>drVigStip.JP252948.2.0.Vigst.08G202400.01 ID=drVigStip.JP252948.2.0.Vigst.08G202400.01; Name=Vigst.08G202400.01; organism=Vigna stipulacea; type=CDS; length=495bp; location=Sequence derived from: Chr08:30294542..30296904- (Vigna stipulacea
ATGGTTCTCAAGACCGAACTTTGCCGTTTCAGTGGTGCAAAGATCTACCC
TGGGAAAGGCATAAGATTTGTGCGTGGTGATTCTCAGGTCTTCCTCTTTG
CGAACTCCAAATGCAAGAGGTATTTCCACAACCGATTGAAGCCTTCAAAG
CTCACCTGGACTGCCATGTACAGGAAACAGCATAAGAAGGATATTGCCCA
AGAAGCTGTGAAAAAGAGGCGTAGGGCAACAAAGAAACCTTACTCAAGGT
CCATTGTTGGTGCTACACTGGAAGTTATTCAGAAAAAAAGAACAGAGAAA
CCAGAAGTACGCGATGCTGCTAGAGAAGCTGCTCTGCGTGAAATCAAAGA
AAGGGTAAAGAAAACAAAGGATGAGAAGAAGGCAAAGAAGGCTGAAGTTC
AGGCTAAGTTACAAAAGTCCCAAGGCAAAGGTGCTGTCAGCAAGGGTGCT
GCACCCAAAGGACCCAAGCTTGGTGGTGGGGGTGGCAAGCGCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR038630L24e/L24_sf
IPR000988Ribosomal_eL24-rel