Vigst.10G132000.01

Transcript Overview
NameVigst.10G132000.01
Unique NamedrVigStip.JP252948.2.0.Vigst.10G132000.01
TypemRNA
OrganismVigna stipulacea ()
Sequence length495
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeChr10:21598043..21600400 -Vigna stipulacea acc. JP252948 genome v2.a1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vstvvaR131Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvvaR138Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvvaR165Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvstL189Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL0536Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL0596Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvstL487Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL0814Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL0815Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvstL597Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvstL633Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL1069Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL1215Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
pvvstL009Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvstL128Pisum sativum Cameor genome v1aPisum sativum
carvstL304Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
psvstL345Pisum sativum Cameor genome v1aPisum sativum
pvvstL273Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
carvstL420Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
pvvstL396Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
carvstL684Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
pvvstL654Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
carvstL778Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
pvvstL859Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vstvstL002Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstL031Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vstvstR106Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstL100Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vstvstR126Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstL233Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vstvuR099Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vstvuR111Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vstvumR110Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvuR129Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvvstL368Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vstvuR137Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vstvumR131Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvumR140Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvstL447Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvstL345Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvstL540Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvstL532Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvstL631Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvstL726Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvstL857Vicia sativa cv. Studenica genome v1.0Vicia sativa
vasvstL017Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL125Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL221Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL283Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL585Vigna angularis cv. Shumari genome v1.a1Vigna angularis

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014664016.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigst.10G132000drVigStip.JP252948.2.0.Vigst.10G132000Vigna stipulaceagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
nbis-exon-131566drVigStip.JP252948.2.0.nbis-exon-131566Vigna stipulaceaexon
nbis-exon-131567drVigStip.JP252948.2.0.nbis-exon-131567Vigna stipulaceaexon
nbis-exon-131568drVigStip.JP252948.2.0.nbis-exon-131568Vigna stipulaceaexon
nbis-exon-131569drVigStip.JP252948.2.0.nbis-exon-131569Vigna stipulaceaexon
nbis-exon-131570drVigStip.JP252948.2.0.nbis-exon-131570Vigna stipulaceaexon
nbis-exon-131571drVigStip.JP252948.2.0.nbis-exon-131571Vigna stipulaceaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-127045drVigStip.JP252948.2.0.cds-127045Vigna stipulaceaCDS
cds-127044drVigStip.JP252948.2.0.cds-127044Vigna stipulaceaCDS
cds-127043drVigStip.JP252948.2.0.cds-127043Vigna stipulaceaCDS
cds-127042drVigStip.JP252948.2.0.cds-127042Vigna stipulaceaCDS
cds-127041drVigStip.JP252948.2.0.cds-127041Vigna stipulaceaCDS
cds-127040drVigStip.JP252948.2.0.cds-127040Vigna stipulaceaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigStip.JP252948.2.0.Vigst.10G132000.01drVigStip.JP252948.2.0.Vigst.10G132000.01Vigna stipulaceapolypeptide
drVigStip.JP252948.2.0.Vigst.10G132000.01drVigStip.JP252948.2.0.Vigst.10G132000.01-proteinVigna stipulaceapolypeptide


Homology
BLAST of Vigst.10G132000.01 vs. ExPASy TrEMBL (2024)
Match: tr|V7BX21|V7BX21_PHAVU (Transcription factor TFIIIC triple barrel domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G083100g PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.363e-66
Identity = 108/131 (82.44%), Postives = 115/131 (87.79%), Query Frame = 0
Query:   21 RNMEANSNSASYEHQDQDEYVLLDLESVYNLINLPANAKYVLSDLDTLNPILIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHED----EETRFRR-RLIDSSQTPPTKQVKPFCQVHKILKFKLSPDSEI 146
            RNMEANS  ASYEH+DQDEYVLLDL+SV NLINLPANAKYVL+ LDTLNP+LIIDDKFKLIG+YEESIGTCLAFTEQD PVVHE+    E   F R RLIDSSQ PPTKQVKP CQ+HKILKFKLSPDSEI
Sbjct:    3 RNMEANS--ASYEHEDQDEYVLLDLDSVSNLINLPANAKYVLTGLDTLNPVLIIDDKFKLIGEYEESIGTCLAFTEQDTPVVHEETGSSEVNLFSRTRLIDSSQ-PPTKQVKPLCQLHKILKFKLSPDSEI 130          
BLAST of Vigst.10G132000.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3SIB0|A0A0S3SIB0_PHAAN (Transcription factor TFIIIC triple barrel domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G128700 PE=4 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 4.170e-65
Identity = 109/131 (83.21%), Postives = 115/131 (87.79%), Query Frame = 0
Query:   23 MEANSNSASYEHQDQDEYVLLDLESVYNLINLPANAKYVLSDLDTLNPILIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHED----EETRFRR-RLIDSSQTPPTKQVKPFCQVHKILKFKLSPDSEIAT 148
            MEANS  ASYEH+DQDEYVLLDL+SV +LINLPANAKYVL+ LDTLNP LIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHE+    E   F R RLIDSSQT PTKQVKPFCQ+HKILKFKLSPDSEI T
Sbjct:    1 MEANS--ASYEHEDQDEYVLLDLDSVSDLINLPANAKYVLTGLDTLNPELIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHEETGSSEVNLFSRTRLIDSSQT-PTKQVKPFCQLHKILKFKLSPDSEIHT 128          
BLAST of Vigst.10G132000.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9ULQ1|A0A0L9ULQ1_PHAAN (Transcription factor TFIIIC triple barrel domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0240480 PE=4 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 4.170e-65
Identity = 109/131 (83.21%), Postives = 115/131 (87.79%), Query Frame = 0
Query:   23 MEANSNSASYEHQDQDEYVLLDLESVYNLINLPANAKYVLSDLDTLNPILIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHED----EETRFRR-RLIDSSQTPPTKQVKPFCQVHKILKFKLSPDSEIAT 148
            MEANS  ASYEH+DQDEYVLLDL+SV +LINLPANAKYVL+ LDTLNP LIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHE+    E   F R RLIDSSQT PTKQVKPFCQ+HKILKFKLSPDSEI T
Sbjct:    1 MEANS--ASYEHEDQDEYVLLDLDSVSDLINLPANAKYVLTGLDTLNPELIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHEETGSSEVNLFSRTRLIDSSQT-PTKQVKPFCQLHKILKFKLSPDSEIHT 128          
BLAST of Vigst.10G132000.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3UDM1|A0A1S3UDM1_VIGRR (Uncharacterized protein LOC106764293 isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106764293 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.117e-64
Identity = 105/131 (80.15%), Postives = 113/131 (86.26%), Query Frame = 0
Query:   23 MEANSNSASYEHQDQDEYVLLDLESVYNLINLPANAKYVLSDLDTLNPILIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHED----EETRFRR-RLIDSSQTPPTKQVKPFCQVHKILKFKLSPDSEIAT 148
            MEANS  ASYEH+DQDEYVLLDL+SV N IN PANAKYVL+ LDTLNP+LIIDDKFKLIGQYEESIGTCLAFTEQDAP+VHE+    E   F R RLIDSSQT PTKQVKP CQ+HKILKFKLSPDSEI +
Sbjct:    1 MEANS--ASYEHEDQDEYVLLDLDSVSNFINFPANAKYVLTGLDTLNPVLIIDDKFKLIGQYEESIGTCLAFTEQDAPLVHEETGSSEVNLFSRTRLIDSSQT-PTKQVKPLCQLHKILKFKLSPDSEIQS 128          
BLAST of Vigst.10G132000.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3UDE5|A0A1S3UDE5_VIGRR (Uncharacterized protein LOC106764293 isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106764293 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.064e-63
Identity = 105/131 (80.15%), Postives = 113/131 (86.26%), Query Frame = 0
Query:   23 MEANSNSASYEHQDQDEYVLLDLESVYNLINLPANAKYVLSDLDTLNPILIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHED----EETRFRR-RLIDSSQTPPTKQVKPFCQVHKILKFKLSPDSEIAT 148
            MEANS  ASYEH+DQDEYVLLDL+SV N IN PANAKYVL+ LDTLNP+LIIDDKFKLIGQYEESIGTCLAFTEQDAP+VHE+    E   F R RLIDSSQT PTKQVKP CQ+HKILKFKLSPDSEI +
Sbjct:    1 MEANS--ASYEHEDQDEYVLLDLDSVSNFINFPANAKYVLTGLDTLNPVLIIDDKFKLIGQYEESIGTCLAFTEQDAPLVHEETGSSEVNLFSRTRLIDSSQT-PTKQVKPLCQLHKILKFKLSPDSEIQS 128          
BLAST of Vigst.10G132000.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3VMA5|A0A1S3VMA5_VIGRR (Uncharacterized protein LOC106776533 OS=Vigna radiata var. radiata OX=3916 GN=LOC106776533 PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 6.794e-63
Identity = 106/129 (82.17%), Postives = 113/129 (87.60%), Query Frame = 0
Query:   23 MEANSNSASYEHQDQDEYVLLDLESVYNLINLPANAKYVLSDLDTLNPILIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHED----EETRFRR-RLIDSSQTPPTKQVKPFCQVHKILKFKLSPDSEI 146
            MEANS  ASYEH+DQDEYVLLDL+SV NLINLPANAKYVL+ LDTLNP+LIIDDKFKLIGQYEESIGTCLAFTEQDAPV +E+    E   F R RL DSSQT PTKQVKPFCQ+HKILKFKLSPDSEI
Sbjct:    1 MEANS--ASYEHEDQDEYVLLDLDSVSNLINLPANAKYVLTGLDTLNPLLIIDDKFKLIGQYEESIGTCLAFTEQDAPVDNEETGSSEVNLFSRTRLSDSSQT-PTKQVKPFCQLHKILKFKLSPDSEI 126          
BLAST of Vigst.10G132000.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6NCN2|A0A4D6NCN2_VIGUN (Transcription factor TFIIIC OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g1138 PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.082e-61
Identity = 102/132 (77.27%), Postives = 112/132 (84.85%), Query Frame = 0
Query:   23 MEANSNSASYEHQDQDEYVLLDLESVYNLINLPANAKYVLSDLDTLNPILIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHED-----EETRFRR-RLIDSSQTPPTKQVKPFCQVHKILKFKLSPDSEIAT 148
            MEANS  ASYEH+DQDEYVLLDL+ V +LINLPANAKYVL+ LDTLNP LIIDDKFKLIG+YEESIGTCLAFTEQ+ PVVHE+     E   F R RLIDS+Q PPTKQVKP CQ+HKILKFKLSPDSEI +
Sbjct:    1 MEANS--ASYEHEDQDEYVLLDLDGVSDLINLPANAKYVLTGLDTLNPELIIDDKFKLIGEYEESIGTCLAFTEQETPVVHEETGSSSEMILFSRTRLIDSNQ-PPTKQVKPLCQLHKILKFKLSPDSEIQS 129          
BLAST of Vigst.10G132000.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86SNK4|A0AA86SNK4_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS17376 PE=4 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 5.644e-61
Identity = 100/133 (75.19%), Postives = 112/133 (84.21%), Query Frame = 0
Query:   21 RNMEANSNSASYEHQDQDEYVLLDLESVYNLINLPANAKYVLSDLDTLNPILIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHED----EETRFR-RRLIDSSQTPPTKQVKPFCQVHKILKFKLSPDSEIAT 148
            RNMEAN+  AS+E +DQDEYVLLDL+ V NLINLP NAKYVL+ LDTLNP+LIIDDKFKLIG+YEE+IGTCLAFTEQD PVVHE+    E   F   RLIDSSQ PPTKQVKP CQ+HK+LKFKLSPDSEI +
Sbjct:   11 RNMEANA--ASHEQEDQDEYVLLDLDGVSNLINLPPNAKYVLTGLDTLNPVLIIDDKFKLIGEYEETIGTCLAFTEQDTPVVHEETGSSEVNLFSGTRLIDSSQ-PPTKQVKPLCQLHKVLKFKLSPDSEIQS 140          
BLAST of Vigst.10G132000.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86VEM8|A0AA86VEM8_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS17475 PE=4 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.532e-56
Identity = 97/133 (72.93%), Postives = 109/133 (81.95%), Query Frame = 0
Query:   21 RNMEANSNSASYEHQDQDEYVLLDLESVYNLINLPANAKYVLSDLDTLNPILIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHED----EETRFR-RRLIDSSQTPPTKQVKPFCQVHKILKFKLSPDSEIAT 148
            RNMEAN+  AS+E +DQDEYVLLDL+ V NLINLP NA YVL+ LDTLNP+LIIDDKFKLIG+YEE+IGTCLAFTEQD  VVHE+    E   F   RLIDSSQ PPTKQVK  CQ+HK+LKFKLSPDSEI +
Sbjct:   40 RNMEANA--ASHEQEDQDEYVLLDLDGVSNLINLPPNANYVLTGLDTLNPVLIIDDKFKLIGEYEETIGTCLAFTEQDTLVVHEETGSSEVNLFSGTRLIDSSQ-PPTKQVKLLCQLHKVLKFKLSPDSEIQS 169          
BLAST of Vigst.10G132000.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2Z6N7P6|A0A2Z6N7P6_TRISU (Transcription factor TFIIIC triple barrel domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_53570 PE=4 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.783e-55
Identity = 90/134 (67.16%), Postives = 109/134 (81.34%), Query Frame = 0
Query:   23 MEANSNSASYEHQDQDEYVLLDLESVYNLINLPANAKYVLSDLDTLNPILIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHED----EETRFRR-RLIDSSQTPPTKQVKPFCQVHKILKFKLSPDSEIATSSQ 151
            ME N+     +H+DQDEYVLLDL+ VY LI++PANA YVL+ LDTLNP+LIIDD+FKL+G+YEE+IGTC+AF+EQD PVVHE+    E  RF   +LIDSSQ P TKQVKP CQ+HKILKFKLSPDSEI T+ +
Sbjct:    1 MEENAT----QHEDQDEYVLLDLDGVYGLIDIPANANYVLTGLDTLNPVLIIDDRFKLVGEYEETIGTCIAFSEQDTPVVHEETGPSETNRFSGTKLIDSSQ-PSTKQVKPVCQLHKILKFKLSPDSEIRTAEE 129          
BLAST of Vigst.10G132000.01 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:30347714-30348321 FORWARD LENGTH=102)

HSP 1 Score: 98.9821 bits (245), Expect = 2.458e-27
Identity = 48/106 (45.28%), Postives = 69/106 (65.09%), Query Frame = 0
Query:   37 QDEYVLLDLESVYNLINLPANAKYVLSDLDTLNPILIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHEDEETRFRRRLIDSSQTPPTKQVKPFCQVHKILKFKLSP 142
            +DE+V++DL+ V   I++PA+A Y LS LDTLNP+L ID K KL+G+Y  +IGTCLAF+++                    +QTP  K V+P  ++HKILKF+L+P
Sbjct:    2 EDEHVMIDLDDVSRHIDIPADAPYTLSGLDTLNPVLTIDGKMKLVGEYIATIGTCLAFSDK------------------GDNQTPQKKTVEPVAKLHKILKFRLAP 89          
BLAST of Vigst.10G132000.01 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:5207704-5208289 REVERSE LENGTH=107)

HSP 1 Score: 94.7449 bits (234), Expect = 1.435e-25
Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 0
Query:   37 QDEYVLLDLESVYNLINLPANAKYVLSDLDTLNPILIIDDKFKLIGQYEESIGTCLAFTEQDAPVVHEDEETRFRRRLIDSSQTPPTKQVKPFCQVHKILKFKLS 141
            ++E+V++DL+ V   I +P++A Y LS LDTLNP+L ID K KL+G+Y E+IGTCLAF+E++     E+             Q P  K ++P  ++HKILKF+L+
Sbjct:    2 EEEFVMIDLDEVSRHIEIPSDAPYTLSGLDTLNPVLTIDGKIKLVGEYIETIGTCLAFSEKEEVSASEN-------------QMPHKKIIEPVAKLHKILKFRLA 93          
The following BLAST results are available for this feature:
BLAST of Vigst.10G132000.01 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|V7BX21|V7BX21_PHAVU2.363e-6682.44Transcription factor TFIIIC triple barrel domain-c... [more]
tr|A0A0S3SIB0|A0A0S3SIB0_PHAAN4.170e-6583.21Transcription factor TFIIIC triple barrel domain-c... [more]
tr|A0A0L9ULQ1|A0A0L9ULQ1_PHAAN4.170e-6583.21Transcription factor TFIIIC triple barrel domain-c... [more]
tr|A0A1S3UDM1|A0A1S3UDM1_VIGRR8.117e-6480.15Uncharacterized protein LOC106764293 isoform X2 OS... [more]
tr|A0A1S3UDE5|A0A1S3UDE5_VIGRR1.064e-6380.15Uncharacterized protein LOC106764293 isoform X1 OS... [more]
tr|A0A1S3VMA5|A0A1S3VMA5_VIGRR6.794e-6382.17Uncharacterized protein LOC106776533 OS=Vigna radi... [more]
tr|A0A4D6NCN2|A0A4D6NCN2_VIGUN5.082e-6177.27Transcription factor TFIIIC OS=Vigna unguiculata O... [more]
tr|A0AA86SNK4|A0AA86SNK4_9FABA5.644e-6175.19Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|A0AA86VEM8|A0AA86VEM8_9FABA1.532e-5672.93Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|A0A2Z6N7P6|A0A2Z6N7P6_TRISU1.783e-5567.16Transcription factor TFIIIC triple barrel domain-c... [more]
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BLAST of Vigst.10G132000.01 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vigst.10G132000.01 vs. Araport11
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
|2.458e-2745.28Symbols: no symbol available | no full name availa... [more]
|1.435e-2543.81Symbols: no symbol available | no full name availa... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna stipulacea acc. JP252948 genome v1.0
Date Performed: 2024-08-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.40.4370coord: 25..139
e-value: 6.2E-11
score: 44.0
IPR019481Transcription factor TFIIIC, triple barrel domainPFAMPF10419TFIIIC_sub6coord: 37..139
e-value: 6.2E-12
score: 56.7
IPR042771TFIIIC subunit GTF3C6-likePANTHERPTHR21860TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 6-RELATEDcoord: 24..158

Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigStip.JP252948.2.0.Vigst.10G132000.01 ID=drVigStip.JP252948.2.0.Vigst.10G132000.01; Name=Vigst.10G132000.01; organism=Vigna stipulacea; type=mRNA; length=495bp
ATGTGCTCTGTAGCAGGGATCGTTCTTCTTCTCATACATTTCAGATCAAA
CTTGGCGTCCAGGAATATGGAGGCAAATTCAAATTCAGCTTCATATGAAC
ATCAAGATCAAGATGAATATGTTCTACTTGACCTGGAAAGTGTTTATAAC
TTAATTAACCTTCCGGCAAATGCCAAGTATGTTCTTAGTGACCTTGATAC
GTTAAATCCAATATTGATCATTGATGACAAATTTAAGTTGATTGGGCAAT
ACGAGGAGTCAATTGGCACATGTCTTGCTTTTACCGAACAAGATGCCCCT
GTGGTTCATGAAGATGAAGAGACAAGATTTAGAAGAAGATTAATTGATTC
CAGTCAAACTCCTCCAACAAAGCAAGTGAAACCTTTTTGTCAGGTTCACA
AGATTCTCAAATTTAAACTATCACCCGATTCTGAAATCGCAACATCATCG
CAGATGAAGAGGTGCAGTGAATTTAAAACTTACGAGAGAACATGA
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protein sequence of drVigStip.JP252948.2.0.Vigst.10G132000.01

>drVigStip.JP252948.2.0.Vigst.10G132000.01 ID=drVigStip.JP252948.2.0.Vigst.10G132000.01; Name=drVigStip.JP252948.2.0.Vigst.10G132000.01; organism=Vigna stipulacea; type=polypeptide; length=165bp
MCSVAGIVLLLIHFRSNLASRNMEANSNSASYEHQDQDEYVLLDLESVYN
LINLPANAKYVLSDLDTLNPILIIDDKFKLIGQYEESIGTCLAFTEQDAP
VVHEDEETRFRRRLIDSSQTPPTKQVKPFCQVHKILKFKLSPDSEIATSS
QMKRCSEFKTYERT*
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mRNA from alignment at Chr10:21598043..21600400-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigStip.JP252948.2.0.Vigst.10G132000.01 ID=drVigStip.JP252948.2.0.Vigst.10G132000.01; Name=Vigst.10G132000.01; organism=Vigna stipulacea; type=mRNA; length=2358bp; location=Sequence derived from: Chr10:21598043..21600400- (Vigna stipulacea
ATGGTATCTGCAGATTTGGACGCGGCTTCCGCTACGGAAACCAACCCACC CACAAGCTTCGAAAGCCTCTTTCTCTTACGAACCACAGTTCTCCCTGGAA CTCTTTTTTTTTATTTCCTACTTTACCCCTCGTGCTTCTCCCTGCACCCT TTTTTGTATTTCCTACTTTACCACTTTTTTTGATTTAAAAAAAGAGAGTT GAACATTGAATAATAAAAATCAAAGACCAGATCTTCCTTTTCTGCCCATC TGATATTTGCAAACCCTAATTCCCTTTGTTTTCATGTTTCTTTTTTTCCT CTCTCGCGGCGCTCCTCCTCCCTCCCGTCCTCCATCATTTTTCATCATTT CATTCTAAGGTATTTTTGTTGCTGAGTGCTCTGTAGCAGGGATCGTTCTT CTTCTCATACATTTCAGATCAAACTTGGCGTCCAGGTTGGTTCTTATGAT TTTCTTAAAGCTCATTATGCATGATCTGTTGTAGCGTGAAAAAAATGCTT GATCTGTTGTTATTATTGCATTTGCGTTTCATTTGTAGTAGAATACAAGG ATGCTTGAACCCAGAAAAGAAAATGCATACATTAAATAGTACTACAAAAC ACTTAAATATTGGTTCAACACATTTTTAATGGAAATCCCATTTTATCCTC CCAAAGAGTATTATATAATCTTGAAACTCAGAAGCTACTGTGTATATAAG TTACCAAAACAAAACAGTCACATATTATAGTTAATGTAACGTACAGCAGT CAAAATTACATTAAAGTATAGTTGTTTCATTTGCTTACTTGATGTTAGAA CAATATCTTTGGTAACTTTTGCTTTTTGTTGCTTTGAGACAAAAATAATA GGCATAAACTTTTTTGTTTTCATTCATTTCAGAGTGGTTATCGTGTGTTA GTATTTATTTGCAATTTATGCACAGGAATATGGAGGCAAATTCAAATTCA GCTTCATATGAACATCAAGATCAAGATGAATATGTTCTACTTGACCTGGA AAGTGTTTATAACTTAATTAACCTTCCGGCAAATGCCAAGTATGTTCTTA GTGTAAGTTTTCCAACATGTTTCCTTTTCTTCATATATTTCACTATATGT ATTTCAACTTTATCTGCTAAATAGATTTTCAATCTCGATACTATAATTTG TTTTCATTTTATGATAAACAGGATCATTTATCTTGATTGAAATGACATGA CACTGCTTAGCTGATGTTTCTATTTTGCATTTTGACTCTTTTATGTTGAT TAATATACTTTCTAAATAAAAAAATTAAAATTCAATAAATTTTAATTTTG TTATCTAAATAAAACATTTAAAAATAATTTTAATTTAAAAATCCAACTTC ATACATGTTAATGTCTTTAGAATTGTGAAATTTAAAAATCCAATTCCATA CATGGTTAATTTCTCCATGAATTCTCTCCTTTATTTTTTTTTTCTTTCAC GTATTTTTCTGGTGATCTTTATTGTTTTGTTATATCATACATAAGTATAC TTATATTAATTTTTTTTAATGATAGGACCTTGATACGTTAAATCCAATAT TGATCATTGATGACAAATTTAAGTTGGTAAGTTGCCTGTTTTAAAATTCC TTGACTTTTTGCCTTTAACGTTTTATTATTGAGAATTTTTTGGGTTAAGT TATATGTTGCTATTTTGGTACTTTTGTAGTCTTGTGTAATATGTTGAAGT CATATATAAATTAATGAAACCTATCCATTTGATTAGTTGTATCTTTCTTC AATGCTTACCTATAGAATTAGGAAAATAATTTTGAATGATTTATTTCAGC TATAATTTTCAATCGGTCAAAGTTACTTCCATCAATTTTTGTTATTTTTG TTTGATAAATTGGCTGAATGGATAATATGATTATCTAAGGATTGTTATTT CTTATGATTTTTTGTCTATAGATTGGGCAATACGAGGAGTCAATTGGCAC ATGTCTTGCTTTTACCGAACAAGGTGAGTTATAGTTAATGTATGTAGAAT TAGTCTGAAAAAGCTTATTGAAAATTATTATGTTTCAATAACGATGTCTT TCAAATTTTTAAGACGCTCATGTTTTATGGAAGACATGCTTTTATGAAAC TAAGTTTTAATTTGATTTGCTTCCCCTTTAATTTAAGTTATTTGATAACC TGCAGATGCCCCTGTGGTTCATGAAGATGAAGAGACAAGATTTAGAAGAA GATTAATTGATTCCAGTCAAACTCCTCCAACAAAGCAAGTGAAACCTTTT TGTCAGGTTCACAAGATTCTCAAATTTAAACTATCACCCGATTCTGAAAT CGCAACATCATCGCAGATGAAGAGGTGCAGTGAATTTAAAACTTACGAGA GAACATGA
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Coding sequence (CDS) from alignment at Chr10:21598043..21600400-

>drVigStip.JP252948.2.0.Vigst.10G132000.01 ID=drVigStip.JP252948.2.0.Vigst.10G132000.01; Name=Vigst.10G132000.01; organism=Vigna stipulacea; type=CDS; length=495bp; location=Sequence derived from: Chr10:21598043..21600400- (Vigna stipulacea
ATGTGCTCTGTAGCAGGGATCGTTCTTCTTCTCATACATTTCAGATCAAA
CTTGGCGTCCAGGAATATGGAGGCAAATTCAAATTCAGCTTCATATGAAC
ATCAAGATCAAGATGAATATGTTCTACTTGACCTGGAAAGTGTTTATAAC
TTAATTAACCTTCCGGCAAATGCCAAGTATGTTCTTAGTGACCTTGATAC
GTTAAATCCAATATTGATCATTGATGACAAATTTAAGTTGATTGGGCAAT
ACGAGGAGTCAATTGGCACATGTCTTGCTTTTACCGAACAAGATGCCCCT
GTGGTTCATGAAGATGAAGAGACAAGATTTAGAAGAAGATTAATTGATTC
CAGTCAAACTCCTCCAACAAAGCAAGTGAAACCTTTTTGTCAGGTTCACA
AGATTCTCAAATTTAAACTATCACCCGATTCTGAAATCGCAACATCATCG
CAGATGAAGAGGTGCAGTGAATTTAAAACTTACGAGAGAACATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR019481TFIIIC_triple_barrel
IPR042771GTF3C6-like
Vocabulary: Biological Process
TermDefinition
GO:0006383transcription by RNA polymerase III