Vum_01G01881.1

Transcript Overview
NameVum_01G01881.1
Unique NamedrVigUmbe.FF25.1.0.Vum_01G01881.1
TypemRNA
OrganismVigna umbellata ()
Sequence length393
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr1chromosomeChr1:32989230..32989622 -Vigna umbellata FF25 genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna umbellata FF25 genome v1.02024-06-26
InterProScan Analysis for Vigna umbellata FF25 genome v1.0 2024-08-05
Blastp of Vigna umbellata FF25 v1.0 proteins vs UniProt TrEMBL2024-08-05
Blastp of Vigna umbellata FF25 v1.0 proteins vs UniProt Swissprot 2024-08-05
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vum_01G01881drVigUmbe.FF25.1.0.Vum_01G01881Vigna umbellatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUmbe.FF25.1.0.Vum_01G01881.1.exon1drVigUmbe.FF25.1.0.Vum_01G01881.1.exon1Vigna umbellataexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUmbe.FF25.1.0.cds.Vum_01G01881.1drVigUmbe.FF25.1.0.cds.Vum_01G01881.1Vigna umbellataCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigUmbe.FF25.1.0.Vum_01G01881.1drVigUmbe.FF25.1.0.Vum_01G01881.1Vigna umbellatapolypeptide
drVigUmbe.FF25.1.0.Vum_01G01881.1drVigUmbe.FF25.1.0.Vum_01G01881.1-proteinVigna umbellatapolypeptide


Homology
[Close]
BLAST of Vum_01G01881.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9UDA3|A0A0L9UDA3_PHAAN (Reverse transcriptase domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g088900 PE=4 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.284e-88
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 0 
Query:    1 MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVSNVYPYGGVEIQGPSTAKSFKVNGHRLKPFLSNPSLVDVVVEETSLVHPTYPPI 130
            MDQAGEERKLQLN+LDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVV+NVYPYG VEIQGPSTAKSFKVNGHRLKPFLSNPSL+DVVVEETSLVHPTYPPI
Sbjct:    1 MDQAGEERKLQLNKLDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVTNVYPYGAVEIQGPSTAKSFKVNGHRLKPFLSNPSLLDVVVEETSLVHPTYPPI 130
[Close]
BLAST of Vum_01G01881.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9U342|A0A0L9U342_PHAAN (Gypsy retrotransposon integrase-like protein 1 OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g062900 PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.320e-88
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0 
Query:    1 MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVSNVYPYGGVEIQGPSTAKSFKVNGHRLKPFLSNPSLVDVVVEETSLVHPTYPPI 130
            MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVV+NVYPYG VEIQGPSTAKSFKVNGHRLKPFLSNPSLVDVVVEETSLVHPTYPPI
Sbjct:  101 MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVTNVYPYGAVEIQGPSTAKSFKVNGHRLKPFLSNPSLVDVVVEETSLVHPTYPPI 230
[Close]
BLAST of Vum_01G01881.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9UDF4|A0A0L9UDF4_PHAAN (Reverse transcriptase domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g094900 PE=4 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.727e-88
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 0 
Query:    1 MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVSNVYPYGGVEIQGPSTAKSFKVNGHRLKPFLSNPSLVDVVVEETSLVHPTYPPI 130
            MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVV+NVYPYG VEIQGPSTAKSFKVNGHRLKPFL+NPSL+DVVVEETSLVHPTYPPI
Sbjct:    1 MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVTNVYPYGAVEIQGPSTAKSFKVNGHRLKPFLNNPSLLDVVVEETSLVHPTYPPI 130
[Close]
BLAST of Vum_01G01881.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T0KAC9|A0A8T0KAC9_PHAAN (Gypsy retrotransposon integrase-like protein 1 OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0226830 PE=4 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 2.524e-86
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 0 
Query:    1 MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVSNVYPYGGVEIQGPSTAKSFKVNGHRLKPFLSNPSLVDVVVEETSLVHPTYPPI 130
            MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVV+NVYPYG VEIQGPSTAKSFKVNGHRLKPFL+NPSL+DVVVEETSLVHPTYPPI
Sbjct:  187 MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVTNVYPYGAVEIQGPSTAKSFKVNGHRLKPFLNNPSLLDVVVEETSLVHPTYPPI 316
[Close]
BLAST of Vum_01G01881.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9T6S6|A0A0L9T6S6_PHAAN (Reverse transcriptase domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan247s000100 PE=4 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.958e-85
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = 0 
Query:    1 MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVSNVYPYGGVEIQGPSTAKSFKVNGHRLKPFLSNPSLVDVVVEETSLVHPTYPP 129
            MDQAGEERKLQLNELDEIRLEAYENSKFYKERTK+FHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVV+NVYPYG VEIQGPS AKSFKVNGHRLKPFLSNPSL+D VVEETSLV+PTYPP
Sbjct:   33 MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKRFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVTNVYPYGAVEIQGPSAAKSFKVNGHRLKPFLSNPSLLDAVVEETSLVYPTYPP 161
[Close]
BLAST of Vum_01G01881.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9TDR9|A0A0L9TDR9_PHAAN (Integrase catalytic domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan561s005800 PE=4 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 2.236e-78
Identity = 121/130 (93.08%), Postives = 125/130 (96.15%), Query Frame = 0 
Query:    1 MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVSNVYPYGGVEIQGPSTAKSFKVNGHRLKPFLSNPSLVDVVVEETSLVHPTYPPI 130
            MDQAGEERKLQLN LDEIRL AYENSKFYKERTK+FHDSSIVRKDFEVGQQVLLYNSRLGLMGGKL SKWTGPFVV+NVYPYG VEIQGPS AKSFKVNGHRLKPFL+NPSL+DVVVEETSLVHPTYPPI
Sbjct:  988 MDQAGEERKLQLNGLDEIRLAAYENSKFYKERTKRFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLTSKWTGPFVVTNVYPYGAVEIQGPSAAKSFKVNGHRLKPFLNNPSLLDVVVEETSLVHPTYPPI 1117
[Close]
BLAST of Vum_01G01881.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T0KKC4|A0A8T0KKC4_PHAAN (RNA-directed DNA polymerase OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0099800 PE=4 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 1.144e-76
Identity = 121/130 (93.08%), Postives = 125/130 (96.15%), Query Frame = 0 
Query:    1 MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVSNVYPYGGVEIQGPSTAKSFKVNGHRLKPFLSNPSLVDVVVEETSLVHPTYPPI 130
            MDQAGEERKLQLN LDEIRL AYENSKFYKERTK+FHDSSIVRKDFEVGQQVLLYNSRLGLMGGKL SKWTGPFVV+NVYPYG VEIQGPS AKSFKVNGHRLKPFL+NPSL+DVVVEETSLVHPTYPPI
Sbjct: 1721 MDQAGEERKLQLNGLDEIRLAAYENSKFYKERTKRFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLTSKWTGPFVVTNVYPYGAVEIQGPSAAKSFKVNGHRLKPFLNNPSLLDVVVEETSLVHPTYPPI 1850
[Close]
BLAST of Vum_01G01881.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445EXM6|A0A445EXM6_GLYSO (Gypsy retrotransposon integrase-like protein 1 OS=Glycine soja OX=3848 GN=D0Y65_055501 PE=4 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.152e-74
Identity = 110/129 (85.27%), Postives = 120/129 (93.02%), Query Frame = 0 
Query:    1 MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVSNVYPYGGVEIQGPSTAKSFKVNGHRLKPFLSNPSLVDVVVEETSLVHPTYPP 129
            MDQAGEERKLQL+ELDEIRLEAYEN+KFYKE+TKKFHDS IV+KDF VGQ+VLLYNSRLGLM GKLRSKW GPFVV+NV+PYG VEI+  ST KSFKVNGHRLKPFL+NPSLVDVVVEETSL+HPT PP
Sbjct:  101 MDQAGEERKLQLSELDEIRLEAYENAKFYKEKTKKFHDSMIVKKDFVVGQKVLLYNSRLGLMSGKLRSKWIGPFVVTNVFPYGTVEIKSDSTNKSFKVNGHRLKPFLTNPSLVDVVVEETSLLHPTLPP 229
[Close]
BLAST of Vum_01G01881.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445I4D8|A0A445I4D8_GLYSO (Gypsy retrotransposon integrase-like protein 1 OS=Glycine soja OX=3848 GN=D0Y65_030600 PE=4 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.903e-73
Identity = 110/129 (85.27%), Postives = 120/129 (93.02%), Query Frame = 0 
Query:    1 MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVSNVYPYGGVEIQGPSTAKSFKVNGHRLKPFLSNPSLVDVVVEETSLVHPTYPP 129
            MDQAGEERKLQL+ELDEIRLEAYEN+KFYKE+TKKFHDS IV+KDF VGQ+VLLYNSRLGLM GKLRSKW GPFVV+NV+PYG VEI+  ST KSFKVNGHRLKPFL+NPSLVDVVVEETSL+HPT PP
Sbjct:  187 MDQAGEERKLQLSELDEIRLEAYENAKFYKEKTKKFHDSMIVKKDFVVGQKVLLYNSRLGLMSGKLRSKWIGPFVVTNVFPYGTVEIKSDSTNKSFKVNGHRLKPFLTNPSLVDVVVEETSLLHPTLPP 315
[Close]
BLAST of Vum_01G01881.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445H6E7|A0A445H6E7_GLYSO (Gypsy retrotransposon integrase-like protein 1 OS=Glycine soja OX=3848 GN=D0Y65_038856 PE=4 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 3.715e-73
Identity = 110/129 (85.27%), Postives = 120/129 (93.02%), Query Frame = 0 
Query:    1 MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQQVLLYNSRLGLMGGKLRSKWTGPFVVSNVYPYGGVEIQGPSTAKSFKVNGHRLKPFLSNPSLVDVVVEETSLVHPTYPP 129
            MDQAGEERKLQL+ELDEIRLEAYEN+KFYKE+TKKFHDS IV+KDF VGQ+VLLYNSRLGLM GKLRSKW GPFVV+NV+PYG VEI+  ST KSFKVNGHRLKPFL+NPSLVDVVVEETSL+HPT PP
Sbjct:  366 MDQAGEERKLQLSELDEIRLEAYENAKFYKEKTKKFHDSMIVKKDFVVGQKVLLYNSRLGLMSGKLRSKWIGPFVVTNVFPYGTVEIKSDSTNKSFKVNGHRLKPFLTNPSLVDVVVEETSLLHPTLPP 494
The following BLAST results are available for this feature:
BLAST of Vum_01G01881.1 vs.
Analysis Date: 2024-06-26 (Vigna umbellata FF25 genome v1.0)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vum_01G01881.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-05 (Blastp of Vigna umbellata FF25 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A0L9UDA3|A0A0L9UDA3_PHAAN1.284e-8896.92Reverse transcriptase domain-containing protein OS... [more]
tr|A0A0L9U342|A0A0L9U342_PHAAN1.320e-8898.46Gypsy retrotransposon integrase-like protein 1 OS=... [more]
tr|A0A0L9UDF4|A0A0L9UDF4_PHAAN1.727e-8896.92Reverse transcriptase domain-containing protein OS... [more]
tr|A0A8T0KAC9|A0A8T0KAC9_PHAAN2.524e-8696.92Gypsy retrotransposon integrase-like protein 1 OS=... [more]
tr|A0A0L9T6S6|A0A0L9T6S6_PHAAN1.958e-8594.57Reverse transcriptase domain-containing protein OS... [more]
tr|A0A0L9TDR9|A0A0L9TDR9_PHAAN2.236e-7893.08Integrase catalytic domain-containing protein OS=P... [more]
tr|A0A8T0KKC4|A0A8T0KKC4_PHAAN1.144e-7693.08RNA-directed DNA polymerase OS=Phaseolus angularis... [more]
tr|A0A445EXM6|A0A445EXM6_GLYSO1.152e-7485.27Gypsy retrotransposon integrase-like protein 1 OS=... [more]
tr|A0A445I4D8|A0A445I4D8_GLYSO1.903e-7385.27Gypsy retrotransposon integrase-like protein 1 OS=... [more]
tr|A0A445H6E7|A0A445H6E7_GLYSO3.715e-7385.27Gypsy retrotransposon integrase-like protein 1 OS=... [more]
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BLAST of Vum_01G01881.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-05 (Blastp of Vigna umbellata FF25 v1.0 proteins vs UniProt Swissprot )
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigUmbe.FF25.1.0.Vum_01G01881.1 ID=drVigUmbe.FF25.1.0.Vum_01G01881.1; Name=Vum_01G01881.1; organism=Vigna umbellata; type=mRNA; length=393bp
ATGGACCAAGCTGGAGAGGAAAGAAAGTTGCAACTGAATGAATTGGATGA
GATCCGATTGGAGGCATATGAGAACTCGAAGTTCTACAAGGAAAGGACAA
AGAAGTTCCATGATAGTTCTATTGTTAGAAAGGACTTCGAGGTTGGCCAA
CAGGTTTTGTTGTATAACTCTAGACTGGGCCTCATGGGTGGTAAGTTGAG
ATCAAAATGGACTGGACCTTTTGTTGTGAGTAATGTTTATCCTTATGGTG
GAGTAGAGATCCAAGGTCCATCTACAGCTAAAAGCTTCAAGGTGAACGGG
CATAGACTGAAGCCCTTCCTCAGCAACCCTTCTTTAGTGGATGTAGTGGT
GGAGGAGACGTCTTTGGTCCACCCCACCTATCCTCCCATCTGA
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protein sequence of drVigUmbe.FF25.1.0.Vum_01G01881.1

>drVigUmbe.FF25.1.0.Vum_01G01881.1 ID=drVigUmbe.FF25.1.0.Vum_01G01881.1; Name=drVigUmbe.FF25.1.0.Vum_01G01881.1; organism=Vigna umbellata; type=polypeptide; length=130bp
MDQAGEERKLQLNELDEIRLEAYENSKFYKERTKKFHDSSIVRKDFEVGQ
QVLLYNSRLGLMGGKLRSKWTGPFVVSNVYPYGGVEIQGPSTAKSFKVNG
HRLKPFLSNPSLVDVVVEETSLVHPTYPPI
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mRNA from alignment at Chr1:32989230..32989622-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigUmbe.FF25.1.0.Vum_01G01881.1 ID=drVigUmbe.FF25.1.0.Vum_01G01881.1; Name=Vum_01G01881.1; organism=Vigna umbellata; type=mRNA; length=393bp; location=Sequence derived from: Chr1:32989230..32989622- (Vigna umbellata
ATGGACCAAGCTGGAGAGGAAAGAAAGTTGCAACTGAATGAATTGGATGA
GATCCGATTGGAGGCATATGAGAACTCGAAGTTCTACAAGGAAAGGACAA
AGAAGTTCCATGATAGTTCTATTGTTAGAAAGGACTTCGAGGTTGGCCAA
CAGGTTTTGTTGTATAACTCTAGACTGGGCCTCATGGGTGGTAAGTTGAG
ATCAAAATGGACTGGACCTTTTGTTGTGAGTAATGTTTATCCTTATGGTG
GAGTAGAGATCCAAGGTCCATCTACAGCTAAAAGCTTCAAGGTGAACGGG
CATAGACTGAAGCCCTTCCTCAGCAACCCTTCTTTAGTGGATGTAGTGGT
GGAGGAGACGTCTTTGGTCCACCCCACCTATCCTCCCATCTGA
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Coding sequence (CDS) from alignment at Chr1:32989230..32989622-

>drVigUmbe.FF25.1.0.Vum_01G01881.1 ID=drVigUmbe.FF25.1.0.Vum_01G01881.1; Name=Vum_01G01881.1; organism=Vigna umbellata; type=CDS; length=393bp; location=Sequence derived from: Chr1:32989230..32989622- (Vigna umbellata
ATGGACCAAGCTGGAGAGGAAAGAAAGTTGCAACTGAATGAATTGGATGA
GATCCGATTGGAGGCATATGAGAACTCGAAGTTCTACAAGGAAAGGACAA
AGAAGTTCCATGATAGTTCTATTGTTAGAAAGGACTTCGAGGTTGGCCAA
CAGGTTTTGTTGTATAACTCTAGACTGGGCCTCATGGGTGGTAAGTTGAG
ATCAAAATGGACTGGACCTTTTGTTGTGAGTAATGTTTATCCTTATGGTG
GAGTAGAGATCCAAGGTCCATCTACAGCTAAAAGCTTCAAGGTGAACGGG
CATAGACTGAAGCCCTTCCTCAGCAACCCTTCTTTAGTGGATGTAGTGGT
GGAGGAGACGTCTTTGGTCCACCCCACCTATCCTCCCATCTGA
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