Vum_03G02007.1

Transcript Overview
NameVum_03G02007.1
Unique NamedrVigUmbe.FF25.1.0.Vum_03G02007.1
TypemRNA
OrganismVigna umbellata ()
Sequence length315
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr3chromosomeChr3:39251904..39252351 +Vigna umbellata FF25 genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna umbellata FF25 genome v1.02024-06-26
InterProScan Analysis for Vigna umbellata FF25 genome v1.0 2024-08-05
Blastp of Vigna umbellata FF25 v1.0 proteins vs UniProt TrEMBL2024-08-05
Blastp of Vigna umbellata FF25 v1.0 proteins vs UniProt Swissprot 2024-08-05
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
avjvumL248Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvumL498Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvumL510Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvumL592Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvumL631Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
pvvumL058Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vrvvumL128Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvumL442Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvumL1234Cajanus cajan Asha genome v1.0Cajanus cajan
ccvumL1320Cajanus cajan Asha genome v1.0Cajanus cajan
vumvumL077Vigna umbellata FF25 genome v1.0Vigna umbellata
vumvumL225Vigna umbellata FF25 genome v1.0Vigna umbellata
vumvumL256Vigna umbellata FF25 genome v1.0Vigna umbellata
vumvumL260Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvumL405Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vumvumR295Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvumL473Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vuvumL213Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvvumL592Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvumL912Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vuvumL332Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvumL677Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvumL760Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vasvumL076Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvumL145Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvumL242Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvumL244Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvumL293Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vum_03G02007drVigUmbe.FF25.1.0.Vum_03G02007Vigna umbellatagene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUmbe.FF25.1.0.cds.Vum_03G02007.1drVigUmbe.FF25.1.0.cds.Vum_03G02007.1Vigna umbellataCDS
drVigUmbe.FF25.1.0.cds.Vum_03G02007.1drVigUmbe.FF25.1.0.cds.Vum_03G02007.1_2Vigna umbellataCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUmbe.FF25.1.0.Vum_03G02007.1.exon1drVigUmbe.FF25.1.0.Vum_03G02007.1.exon1Vigna umbellataexon
drVigUmbe.FF25.1.0.Vum_03G02007.1.exon2drVigUmbe.FF25.1.0.Vum_03G02007.1.exon2Vigna umbellataexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigUmbe.FF25.1.0.Vum_03G02007.1drVigUmbe.FF25.1.0.Vum_03G02007.1Vigna umbellatapolypeptide
drVigUmbe.FF25.1.0.Vum_03G02007.1drVigUmbe.FF25.1.0.Vum_03G02007.1-proteinVigna umbellatapolypeptide


Homology
BLAST of Vum_03G02007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T0K0C9|A0A8T0K0C9_PHAAN (Knottin scorpion toxin-like domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0221070 PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 7.273e-51
Identity = 80/104 (76.92%), Postives = 89/104 (85.58%), Query Frame = 0
Query:    1 MEKIKIKCIWVMITIMILLNFAQSVLSHGVACQVKCNVQCEFIGYSQKAFDNCVKKCESQCGQLSNDPFYKCISNCHSMKSATINNGARDTGNNEMDTCIQKCK 104
            M+KI+IKCI VMITIMILLNFA  VLSHGV C+VKCN QCEFIGY++K F+NCVK CES C QLSN+P YKCISNC+  KS TINNGARD  NNEM+TCIQKCK
Sbjct:    1 MDKIEIKCIGVMITIMILLNFAPPVLSHGVLCKVKCNTQCEFIGYTKKLFENCVKNCESHCNQLSNNPSYKCISNCYLTKSTTINNGARDLRNNEMNTCIQKCK 104          
BLAST of Vum_03G02007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T0K058|A0A8T0K058_PHAAN (Knottin scorpion toxin-like domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0221080 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.803e-42
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 0
Query:   16 MILLNFAQSVLSHGVACQVKCNVQCEFIGYSQKAFDNCVKKCESQCGQLSNDPFYKCISNCHSMKSATINN 86
            MILLNFAQSVLSHGV CQVKCNVQCEFIGYSQKAFDNCVKKCESQCGQLSNDPFYKCISNCH MKSATINN
Sbjct:    1 MILLNFAQSVLSHGVVCQVKCNVQCEFIGYSQKAFDNCVKKCESQCGQLSNDPFYKCISNCHLMKSATINN 71          
BLAST of Vum_03G02007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T0K090|A0A8T0K090_PHAAN (Knottin scorpion toxin-like domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0221470 PE=4 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.139e-40
Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = 0
Query:    1 MEKIKIKCIWVMITIMILLNFAQSVLSHGVACQVKCNVQCEFIGYSQKAFDNCVKKCE-SQCGQLSNDPFYKCISNCHSMKSATINNGARDTGNNEMDTCIQKCK 104
            M KI++KCI VMITIMILLNFAQ +LSHG+ C +KC ++C F G SQ+ F  C+  CE S C QLSNDPFY CIS+CH +KS  IN+G  D  NNEM+TCIQKCK
Sbjct:    1 MGKIEMKCIGVMITIMILLNFAQPILSHGLLCDIKCRIRCFFAGVSQELFSRCMGHCESSHCSQLSNDPFYNCISDCHLIKSNAINDGVADNVNNEMNTCIQKCK 105          
BLAST of Vum_03G02007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3RQ98|A0A0S3RQ98_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G280600 PE=4 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.768e-37
Identity = 65/104 (62.50%), Postives = 74/104 (71.15%), Query Frame = 0
Query:    1 MEKIKIKCIWVMITIMILLNFAQSVLSHGVACQVKCNVQCEFIGYSQKAFDNCVKKCESQCGQLSNDPFYKCISNCHSMKSATINNGARDTGNNEMDTCIQKCK 104
            M KI+IK I +MITIMILLNFAQ VLSHGV C +KC +QC  +   Q  FD C+  C S C QLSN PF  CIS+CH MKS  IN+G  D  NNEM+TCIQKCK
Sbjct:    1 MGKIEIKSIGIMITIMILLNFAQPVLSHGVFCDIKCKLQCVALKIVQHIFDKCMNDCRSHCSQLSNHPFNNCISDCHIMKSNAINDGTPDMVNNEMNTCIQKCK 104          
BLAST of Vum_03G02007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T0K028|A0A8T0K028_PHAAN (Plant thionin family protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0221440 PE=4 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.768e-37
Identity = 65/104 (62.50%), Postives = 74/104 (71.15%), Query Frame = 0
Query:    1 MEKIKIKCIWVMITIMILLNFAQSVLSHGVACQVKCNVQCEFIGYSQKAFDNCVKKCESQCGQLSNDPFYKCISNCHSMKSATINNGARDTGNNEMDTCIQKCK 104
            M KI+IK I +MITIMILLNFAQ VLSHGV C +KC +QC  +   Q  FD C+  C S C QLSN PF  CIS+CH MKS  IN+G  D  NNEM+TCIQKCK
Sbjct:    1 MGKIEIKSIGIMITIMILLNFAQPVLSHGVFCDIKCKLQCVALKIVQHIFDKCMNDCRSHCSQLSNHPFNNCISDCHIMKSNAINDGTPDMVNNEMNTCIQKCK 104          
BLAST of Vum_03G02007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T0K000|A0A8T0K000_PHAAN (Knottin scorpion toxin-like domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0221480 PE=4 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 7.544e-35
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 0
Query:    1 MEKIKIKCIWVMITIMILLNFAQSVLSHG-VACQVKCNVQCEFIGYSQKAFDNCVKKCE-SQCGQLSNDPFYKCISNCHSMKSATINNGARDTGNNEMDTCIQKCK 104
            M KI++K I VMITIMILLNFA+ VLSHG + C +KC ++C F G SQ  F  C+  C+ S C QLSNDPFY CIS+CH +KS  INN   D  NNEM+TCIQKCK
Sbjct:    1 MGKIEMKSIGVMITIMILLNFAEPVLSHGGLLCDIKCRIRCFFAGVSQVLFSRCMGHCKASHCSQLSNDPFYNCISDCHLIKSNAINNVGADNVNNEMNTCIQKCK 106          
BLAST of Vum_03G02007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T0K025|A0A8T0K025_PHAAN (Knottin scorpion toxin-like domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0221430 PE=4 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.965e-31
Identity = 59/105 (56.19%), Postives = 72/105 (68.57%), Query Frame = 0
Query:    1 MEKIKIKCIWVMITIMILLNFAQSVLSHGVACQVKCNVQCEFIGYSQKA-FDNCVKKCESQCGQLSNDPFYKCISNCHSMKSATINNGARDTGNNEMDTCIQKCK 104
            M K +IK I +MITIMILLNFAQ VLS    C++KC  QC  +  + K  F+ CV  C+S C +LS+ PFY CIS+CH  KS  IN+GA    NNEM+TCIQKCK
Sbjct:    1 MGKFEIKSIGIMITIMILLNFAQPVLSTSFFCRLKCTTQCAALRITSKGLFNRCVNDCKSHCSKLSDHPFYNCISDCHLTKSNAINDGAPHNVNNEMNTCIQKCK 105          
BLAST of Vum_03G02007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T0K093|A0A8T0K093_PHAAN (Knottin scorpion toxin-like domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0221460 PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.307e-27
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 0
Query:    1 MEKIKIKCIWVMITIMILLNFAQSVLSHGVACQVKCNVQCEFIGY-SQKAFDNCVKKCESQCGQLSNDPFYKCISNCHSMKSATINNGARDTGNNEMDTCIQKCK 104
            M K ++K I +MITIMILLNFAQ VLS    C++KC ++C  + + S+  FD CV  C+S+C QLSN  FY CIS+CH MK   INNGA    N  M+TC+QKCK
Sbjct:    1 MGKFEMKSIGIMITIMILLNFAQPVLSTSYLCRLKCTLKCVPLRFGSKNFFDTCVNDCKSRCSQLSNHHFYNCISDCHLMKFNAINNGAPKVYNG-MNTCVQKCK 104          
BLAST of Vum_03G02007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6LFJ3|A0A4D6LFJ3_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g1792 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.031e-22
Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 0
Query:    1 MEKIKIKCIWVMITIMILLNFAQSVLSHGVACQVKCNVQCEFIGYSQKAFDNCVKKCESQCGQLSNDPFYKCISNCHSMKSATINNGARDTGNNEMDTCIQKCK 104
            M KI+IK + V+IT+MILL+FA++  +    C  KC ++CE   + +  +  C+K CES C +LS++P Y CI+ C  MKS    NGA D   N M+TC+Q+CK
Sbjct:    1 MGKIEIKALGVIITVMILLSFAEAESTDNFWCNAKCKIKCEEQPFPEH-YAQCMKDCESHCTELSSNPVYNCITGCRLMKSIATKNGASDLVENAMNTCMQECK 103          
BLAST of Vum_03G02007.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6LF68|A0A4D6LF68_VIGUN (Thionin-like protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g1785 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.522e-20
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 0
Query:    1 MEKIKIKCIWVMI-TIMILLNFAQSVLSHGVACQVKCNVQCEFIGYSQKAFDNCVKKCESQCGQLSNDPFYKCISNCHSMKSATINNGARDTGNNEMDTCIQKCK 104
            M K ++K I V+I T+MILLNFAQ+  + G  C  KC ++CE   + +  +  C+K C + C +LSN P Y CI+ C  MKS  I NG  D  NN M+TCIQ+CK
Sbjct:    1 MGKFEMKTIGVIIITVMILLNFAQADEADGFLCNAKCKIKCEEQPFPEH-YAKCMKDCLAHCTELSN-PVYNCITGCRLMKSIVIKNGVGDLVNNGMNTCIQQCK 103          
The following BLAST results are available for this feature:
BLAST of Vum_03G02007.1 vs.
Analysis Date: 2024-06-26 (Vigna umbellata FF25 genome v1.0)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Vum_03G02007.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-05 (Blastp of Vigna umbellata FF25 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A8T0K0C9|A0A8T0K0C9_PHAAN7.273e-5176.92Knottin scorpion toxin-like domain-containing prot... [more]
tr|A0A8T0K058|A0A8T0K058_PHAAN6.803e-4297.18Knottin scorpion toxin-like domain-containing prot... [more]
tr|A0A8T0K090|A0A8T0K090_PHAAN8.139e-4063.81Knottin scorpion toxin-like domain-containing prot... [more]
tr|A0A0S3RQ98|A0A0S3RQ98_PHAAN6.768e-3762.50Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|A0A8T0K028|A0A8T0K028_PHAAN6.768e-3762.50Plant thionin family protein OS=Phaseolus angulari... [more]
tr|A0A8T0K000|A0A8T0K000_PHAAN7.544e-3561.32Knottin scorpion toxin-like domain-containing prot... [more]
tr|A0A8T0K025|A0A8T0K025_PHAAN3.965e-3156.19Knottin scorpion toxin-like domain-containing prot... [more]
tr|A0A8T0K093|A0A8T0K093_PHAAN1.307e-2754.29Knottin scorpion toxin-like domain-containing prot... [more]
tr|A0A4D6LFJ3|A0A4D6LFJ3_VIGUN4.031e-2244.23Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
tr|A0A4D6LF68|A0A4D6LF68_VIGUN6.522e-2046.67Thionin-like protein OS=Vigna unguiculata OX=3917 ... [more]
back to top
BLAST of Vum_03G02007.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-05 (Blastp of Vigna umbellata FF25 v1.0 proteins vs UniProt Swissprot )
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigUmbe.FF25.1.0.Vum_03G02007.1 ID=drVigUmbe.FF25.1.0.Vum_03G02007.1; Name=Vum_03G02007.1; organism=Vigna umbellata; type=mRNA; length=315bp
ATGGAGAAAATTAAGATAAAATGTATTTGGGTTATGATTACGATTATGAT
TTTATTAAATTTTGCACAATCCGTATTAAGTCATGGTGTTGCATGCCAAG
TGAAATGTAATGTCCAATGTGAGTTTATTGGATATAGTCAAAAAGCATTT
GACAATTGTGTCAAAAAGTGTGAGTCACAATGTGGTCAATTATCCAACGA
TCCTTTCTACAAATGTATCAGTAACTGTCACTCAATGAAGTCTGCTACCA
TCAACAACGGTGCTCGTGATACTGGGAATAATGAGATGGATACCTGCATA
CAAAAGTGCAAATAA
back to top

protein sequence of drVigUmbe.FF25.1.0.Vum_03G02007.1

>drVigUmbe.FF25.1.0.Vum_03G02007.1 ID=drVigUmbe.FF25.1.0.Vum_03G02007.1; Name=drVigUmbe.FF25.1.0.Vum_03G02007.1; organism=Vigna umbellata; type=polypeptide; length=104bp
MEKIKIKCIWVMITIMILLNFAQSVLSHGVACQVKCNVQCEFIGYSQKAF
DNCVKKCESQCGQLSNDPFYKCISNCHSMKSATINNGARDTGNNEMDTCI
QKCK
back to top

mRNA from alignment at Chr3:39251904..39252351+

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigUmbe.FF25.1.0.Vum_03G02007.1 ID=drVigUmbe.FF25.1.0.Vum_03G02007.1; Name=Vum_03G02007.1; organism=Vigna umbellata; type=mRNA; length=448bp; location=Sequence derived from: Chr3:39251904..39252351+ (Vigna umbellata
ATGGAGAAAATTAAGATAAAATGTATTTGGGTTATGATTACGATTATGAT TTTATTAAATTTTGCACAATCCGTATTAAGTCATGGTGTTGCATGCCAAG TGAAATGTAATGTCCAATGTGAGTTTATTGGATATAGTCAAAAAGCATTT GACAATTGTGTCAAAAAGTGTGAGTCACAATGTGGTCAATTATCCAACGA TCCTTTCTACAAATGTATCAGTAACTGTCACTCAATGAAGTCTGCTACCA TCAACAACGGTATGTATTCTTAAATTTTTTATGGTTTAACATTATTTCTT GATGTTTTATTTCAATAATTTTTTTTCACATGATTTTTATAATTAATTTG CTTATTTTTTTATTTTAACCATTAATTTTACATGCTTATCAGGTGCTCGT GATACTGGGAATAATGAGATGGATACCTGCATACAAAAGTGCAAATAA
back to top

Coding sequence (CDS) from alignment at Chr3:39251904..39252351+

>drVigUmbe.FF25.1.0.Vum_03G02007.1 ID=drVigUmbe.FF25.1.0.Vum_03G02007.1; Name=Vum_03G02007.1; organism=Vigna umbellata; type=CDS; length=315bp; location=Sequence derived from: Chr3:39251904..39252351+ (Vigna umbellata
ATGGAGAAAATTAAGATAAAATGTATTTGGGTTATGATTACGATTATGAT
TTTATTAAATTTTGCACAATCCGTATTAAGTCATGGTGTTGCATGCCAAG
TGAAATGTAATGTCCAATGTGAGTTTATTGGATATAGTCAAAAAGCATTT
GACAATTGTGTCAAAAAGTGTGAGTCACAATGTGGTCAATTATCCAACGA
TCCTTTCTACAAATGTATCAGTAACTGTCACTCAATGAAGTCTGCTACCA
TCAACAACGGTGCTCGTGATACTGGGAATAATGAGATGGATACCTGCATA
CAAAAGTGCAAATAA
back to top