Vum_08G01288.1

Transcript Overview
NameVum_08G01288.1
Unique NamedrVigUmbe.FF25.1.0.Vum_08G01288.1
TypemRNA
OrganismVigna umbellata ()
Sequence length570
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr8chromosomeChr8:13574154..13574811 -Vigna umbellata FF25 genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna umbellata FF25 genome v1.02024-06-26
InterProScan Analysis for Vigna umbellata FF25 genome v1.0 2024-08-05
Blastp of Vigna umbellata FF25 v1.0 proteins vs UniProt TrEMBL2024-08-05
Blastp of Vigna umbellata FF25 v1.0 proteins vs UniProt Swissprot 2024-08-05
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
avjvumL094Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvumL296Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvumL0740Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvumL0893Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvumL1209Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ccavumL252Cajanus cajan cv. Asha genome v2.0Cajanus cajan
carvumL197Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccavumL345Cajanus cajan cv. Asha genome v2.0Cajanus cajan
carvumL285Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
psvumL200Pisum sativum Cameor genome v1aPisum sativum
carvumL301Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccvumL0716Cajanus cajan Asha genome v1.0Cajanus cajan
carvumL331Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccvumL0894Cajanus cajan Asha genome v1.0Cajanus cajan
vfhvumL392Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvumL418Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvumL443Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvumL574Pisum sativum Cameor genome v1aPisum sativum
psvumL592Pisum sativum Cameor genome v1aPisum sativum
vumvumL110Vigna umbellata FF25 genome v1.0Vigna umbellata
vumvumR160Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumL581Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vfhvumL646Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvumL652Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvumL669Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vrvvumL626Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvumL521Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvumL535Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvumL511Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvumL583Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vssvumL848Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvumL868Vicia sativa cv. Studenica genome v1.0Vicia sativa
vumvvaR142Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vumvvaR202Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vumvvaR204Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvumL428Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvumL565Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvumL415Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvumL538Vigna angularis cv. Shumari genome v1.a1Vigna angularis

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.007G188400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_014656626.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.3g061240.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_15530Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigst.08G124800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
evm.Ca_v2.0_08865Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
XM_058886301.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Cc_v2.0_04044.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-KK1_007166Cajanus cajan Asha genome v1.0Cajanus cajan
jg32555.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.3g081040.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
XM_058914577.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
jg1888.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_10128Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun07g156200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Hedin2.R1.5g122600.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigan.08G161100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
evm.Ca_v2.0_08542Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
Va02G053650.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat6g144760.1Pisum sativum Cameor genome v1aPisum sativum
jg3097.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vum_08G01288drVigUmbe.FF25.1.0.Vum_08G01288Vigna umbellatagene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUmbe.FF25.1.0.cds.Vum_08G01288.1drVigUmbe.FF25.1.0.cds.Vum_08G01288.1Vigna umbellataCDS
drVigUmbe.FF25.1.0.cds.Vum_08G01288.1drVigUmbe.FF25.1.0.cds.Vum_08G01288.1_2Vigna umbellataCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUmbe.FF25.1.0.Vum_08G01288.1.exon2drVigUmbe.FF25.1.0.Vum_08G01288.1.exon2Vigna umbellataexon
drVigUmbe.FF25.1.0.Vum_08G01288.1.exon1drVigUmbe.FF25.1.0.Vum_08G01288.1.exon1Vigna umbellataexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigUmbe.FF25.1.0.Vum_08G01288.1drVigUmbe.FF25.1.0.Vum_08G01288.1Vigna umbellatapolypeptide
drVigUmbe.FF25.1.0.Vum_08G01288.1drVigUmbe.FF25.1.0.Vum_08G01288.1-proteinVigna umbellatapolypeptide


Homology
[Close]
BLAST of Vum_08G01288.1 vs. Araport11
Match: | (Symbols: H1.2, HON2 | Histone 1.2 | chr2:13045360-13046267 FORWARD LENGTH=202)

HSP 1 Score: 102.834 bits (255), Expect = 2.465e-27
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 0 
Query:   11 KTAATTKKHL--SHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKL 88
            K AA TKK    SHPT+  MI +AI +LKERTGSSQYAI KFIE KHK LPPT++KL+L+ LK+ VA+  LVKVK SFK+
Sbjct:   49 KAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128
[Close]
BLAST of Vum_08G01288.1 vs. Araport11
Match: | (Symbols: H1.2, HON2 | Histone 1.2 | chr2:13045360-13046267 FORWARD LENGTH=273)

HSP 1 Score: 103.605 bits (257), Expect = 5.354e-27
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 0 
Query:   11 KTAATTKKHL--SHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKL 88
            K AA TKK    SHPT+  MI +AI +LKERTGSSQYAI KFIE KHK LPPT++KL+L+ LK+ VA+  LVKVK SFK+
Sbjct:   49 KAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128
[Close]
BLAST of Vum_08G01288.1 vs. Araport11
Match: | (Symbols: H1.1, HON1 | Histone 1.1 | chr1:2076687-2077616 REVERSE LENGTH=274)

HSP 1 Score: 88.5817 bits (218), Expect = 2.489e-21
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 0 
Query:   21 SHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKL 88
            SHPT+  MI +AI +LKERTGSSQYAI KFIE K KELPPT++KL+L+ LK+ VA+G LVKVK SFKL
Sbjct:   61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128
[Close]
BLAST of Vum_08G01288.1 vs. Araport11
Match: | (Symbols: HON3, HIS1-3 | histone H1-3 | chr2:7846095-7846670 FORWARD LENGTH=167)

HSP 1 Score: 75.485 bits (184), Expect = 3.071e-17
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 0 
Query:   21 SHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKE-LPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAP-TKPVSAPSAKVGVAAPKK-PKSVTKTTTKAASKPK 124
            +HP +  MI EA+  LKE+ GSS YAI K IE KHK  LP +++K + +QLK SVA G LVK++ S+KL+  TK ++    K      K+  K +TK T  ++++PK
Sbjct:   23 THPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRSSSTRPK 129
[Close]
BLAST of Vum_08G01288.1 vs. Araport11
Match: | (Symbols: HON3, HIS1-3 | histone H1-3 | chr2:7846254-7846670 FORWARD LENGTH=138)

HSP 1 Score: 70.4774 bits (171), Expect = 1.468e-15
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 0 
Query:   28 MISEAITSLKERTGSSQYAITKFIEGKHKE-LPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAP-TKPVSAPSAKVGVAAPKK-PKSVTKTTTKAASKPK 124
            MI EA+  LKE+ GSS YAI K IE KHK  LP +++K + +QLK SVA G LVK++ S+KL+  TK ++    K      K+  K +TK T  ++++PK
Sbjct:    1 MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRSSSTRPK 100
[Close]
BLAST of Vum_08G01288.1 vs. Araport11
Match: | (Symbols: HMGA | high mobility group A | chr1:5138665-5139353 REVERSE LENGTH=204)

HSP 1 Score: 52.7582 bits (125), Expect = 1.747e-8
Identity = 24/67 (35.82%), Postives = 37/67 (55.22%), Query Frame = 0 
Query:   20 LSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSF 86
             S P +  MI EAI SL ++ G ++  I K IE   + LPP++  L+   L +    G L+ VKN++
Sbjct:   21 FSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMVKNNY 87
[Close]
BLAST of Vum_08G01288.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:20257340-20259176 FORWARD LENGTH=197)

HSP 1 Score: 51.6026 bits (122), Expect = 4.464e-8
Identity = 25/70 (35.71%), Postives = 44/70 (62.86%), Query Frame = 0 
Query:   25 FAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPV 94
            +  M+ EA++++ +  GS+   I +FIEG+H E+P  +KKL+   L   V+   L KV+N +K++ TK +
Sbjct:    7 YDAMVFEAVSTINDENGSNLKEILRFIEGQH-EVPQNFKKLLSYSLGILVSQDKLKKVRNRYKISVTKAI 75
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3SQ54|A0A0S3SQ54_PHAAN (H15 domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G161100 PE=3 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 6.082e-111
Identity = 186/189 (98.41%), Postives = 186/189 (98.41%), Query Frame = 0 
Query:    1 MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPVSAPSAKVGVAAPKKPKSVTKTTTKAASKPKPAPKKKPVSKSKAKTAAVAVKPKAKPAKKVVAKSAKKTPVKAVKKPKSVVKKPKSVKSPAKKTKK 189
            MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPVSAP AKV VAAPKKPKSVTKTTTKAASKPKPAPKKKPVSK KAKTAAVAVKPKAKPAKKVVAKSAKKTPVKAVKKPKSVVKKPKSVKSPAKKTKK
Sbjct:    1 MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPVSAPPAKVAVAAPKKPKSVTKTTTKAASKPKPAPKKKPVSKPKAKTAAVAVKPKAKPAKKVVAKSAKKTPVKAVKKPKSVVKKPKSVKSPAKKTKK 189
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9THA2|A0A0L9THA2_PHAAN (Histone protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0234260 PE=3 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 6.082e-111
Identity = 186/189 (98.41%), Postives = 186/189 (98.41%), Query Frame = 0 
Query:    1 MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPVSAPSAKVGVAAPKKPKSVTKTTTKAASKPKPAPKKKPVSKSKAKTAAVAVKPKAKPAKKVVAKSAKKTPVKAVKKPKSVVKKPKSVKSPAKKTKK 189
            MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPVSAP AKV VAAPKKPKSVTKTTTKAASKPKPAPKKKPVSK KAKTAAVAVKPKAKPAKKVVAKSAKKTPVKAVKKPKSVVKKPKSVKSPAKKTKK
Sbjct:    1 MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPVSAPPAKVAVAAPKKPKSVTKTTTKAASKPKPAPKKKPVSKPKAKTAAVAVKPKAKPAKKVVAKSAKKTPVKAVKKPKSVVKKPKSVKSPAKKTKK 189
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3V1P9|A0A1S3V1P9_VIGRR (Histone H1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770814 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.140e-53
Identity = 109/117 (93.16%), Postives = 110/117 (94.02%), Query Frame = 0 
Query:    1 MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPVSAPSAKVGVAAPKKPKSVTKTTT 117
            MSTAAQPK+KKTAATTKK LSHPTFAVMI EAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAG LVKVKNSFKLAPTKPVSA  AK  VAAPKKPKSVTKTTT
Sbjct:    1 MSTAAQPKIKKTAATTKKPLSHPTFAVMIVEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGILVKVKNSFKLAPTKPVSA-PAKAVVAAPKKPKSVTKTTT 116
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A371G8Z6|A0A371G8Z6_MUCPR (Histone H1.2 (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_31565 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.082e-49
Identity = 96/122 (78.69%), Postives = 105/122 (86.07%), Query Frame = 0 
Query:    1 MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPVS--APSAKVGVAAPKKPKSVTKTTTKAA 120
            MSTAAQP+ KKTA ++KK LSHP FAVMI+EAI+SLKERTGSSQYAITKFIEGKHKELPPTYKKLVL+ +KKSVAAG LVKVKNSFKLAPTKP S  A SA     APKKPK+V+K T KAA
Sbjct:    1 MSTAAQPRAKKTA-SSKKPLSHPPFAVMITEAISSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLVHIKKSVAAGKLVKVKNSFKLAPTKPASVKADSA----TAPKKPKAVSKPTAKAA 117
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7BJS9|V7BJS9_PHAVU (H15 domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G188400g PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.955e-42
Identity = 96/118 (81.36%), Postives = 101/118 (85.59%), Query Frame = 0 
Query:    1 MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPVSAPS----AKVGVAAPKKPKSVTK 114
            MSTAAQ +VKKTAAT KK LSHPTFAVMI+EAI SLKERTGSSQYAITKFIEGKHKELPPTYKKLVL+ LKKSVAAG LVKVKNSFKLAPTK  SAP+     K  +A PKKPKSV K
Sbjct:    1 MSTAAQTRVKKTAAT-KKPLSHPTFAVMITEAIASLKERTGSSQYAITKFIEGKHKELPPTYKKLVLLHLKKSVAAGKLVKVKNSFKLAPTK--SAPTKPAPVKATIAVPKKPKSVAK 115
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8M9W5|A0A8B8M9W5_ABRPR (Histone H1-like OS=Abrus precatorius OX=3816 GN=LOC113872189 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.710e-41
Identity = 73/92 (79.35%), Postives = 81/92 (88.04%), Query Frame = 0 
Query:    1 MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTK 92
            MST AQ K K+  A TKK LSHP FAVMI+EAI SLKERTGSSQYAITKFIEGKHKELPPT++KL+L QLKK+VA+G LVKVKNSFKLAPT+
Sbjct:    1 MSTTAQAKAKRKMAATKKPLSHPPFAVMITEAIASLKERTGSSQYAITKFIEGKHKELPPTFRKLILHQLKKAVASGKLVKVKNSFKLAPTR 92
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445ING3|A0A445ING3_GLYSO (Histone H1.2 OS=Glycine soja OX=3848 GN=D0Y65_027253 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.917e-41
Identity = 93/123 (75.61%), Postives = 99/123 (80.49%), Query Frame = 0 
Query:    1 MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPVSAPSAKVGVAAPKKPKSVTKTTTKAASKP 123
            MSTAAQPK KKTA++ K  LSHP FAVMI+EAI SLKERTGSSQYAITK+IEGKHKELP TYKKLVL+ LKKSVAAG LVKVKNSFKLAPTKP     A V  AAPKKP       TKAA+KP
Sbjct:    1 MSTAAQPKAKKTASSKKP-LSHPPFAVMIAEAIASLKERTGSSQYAITKYIEGKHKELPATYKKLVLVHLKKSVAAGKLVKVKNSFKLAPTKP-----APVKAAAPKKP-------TKAATKP 110
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0B2Q3X5|A0A0B2Q3X5_GLYSO (Histone H1.2 OS=Glycine soja OX=3848 GN=glysoja_038113 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.278e-40
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 0 
Query:    1 MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPT 91
            MSTAAQPK KKTA++ K  LSHPTFAVMI+EAI SLKERTGSSQYAITKFIEGKHKELPPTYKKLVL+ LKKSVAAG LVKVKNSFKLAPT
Sbjct:    1 MSTAAQPKAKKTASSKKP-LSHPTFAVMIAEAIASLKERTGSSQYAITKFIEGKHKELPPTYKKLVLVHLKKSVAAGKLVKVKNSFKLAPT 90
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1LBM9|I1LBM9_SOYBN (H15 domain-containing protein OS=Glycine max OX=3847 GN=100785055 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.677e-40
Identity = 92/123 (74.80%), Postives = 99/123 (80.49%), Query Frame = 0 
Query:    1 MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPVSAPSAKVGVAAPKKPKSVTKTTTKAASKP 123
            MSTA+QPK KKTA++ K  LSHP FAVMI+EAI SLKERTGSSQYAITK+IEGKHKELP TYKKLVL+ LKKSVAAG LVKVKNSFKLAPTKP     A V  AAPKKP       TKAA+KP
Sbjct:    1 MSTASQPKAKKTASSKKP-LSHPPFAVMIAEAIASLKERTGSSQYAITKYIEGKHKELPATYKKLVLVHLKKSVAAGKLVKVKNSFKLAPTKP-----APVKAAAPKKP-------TKAATKP 110
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy TrEMBL (2024)
Match: tr|C6THP7|C6THP7_SOYBN (H15 domain-containing protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.705e-40
Identity = 91/123 (73.98%), Postives = 99/123 (80.49%), Query Frame = 0 
Query:    1 MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPVSAPSAKVGVAAPKKPKSVTKTTTKAASKP 123
            MSTA+QPK KKTA++ K  LSHP FAVMI+EAI SLKERTGSSQYA+TK+IEGKHKELP TYKKLVL+ LKKSVAAG LVKVKNSFKLAPTKP     A V  AAPKKP       TKAA+KP
Sbjct:    1 MSTASQPKAKKTASSKKP-LSHPPFAVMIAEAIASLKERTGSSQYAMTKYIEGKHKELPATYKKLVLVHLKKSVAAGKLVKVKNSFKLAPTKP-----APVKAAAPKKP-------TKAATKP 110
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P26569|H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.196e-26
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 0 
Query:   11 KTAATTKKHL--SHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKL 88
            K AA TKK    SHPT+  MI +AI +LKERTGSSQYAI KFIE KHK LPPT++KL+L+ LK+ VA+  LVKVK SFK+
Sbjct:   49 KAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P23444|H1_MAIZE (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 8.259e-23
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 0 
Query:   21 SHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHK-ELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLA 89
            +H  +A M+SEAITSLKERTGSS YAI KF+E KHK +LPP ++KL+ +QLKK VA G L KVKNS+KL+
Sbjct:   49 THLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLS 118
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9M5W4|H1_EUPES (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.106e-21
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 0 
Query:   21 SHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFK 87
            SHP+F  MIS+AI++LKERTGSSQYAI KF+E KHK+LP  ++KL+L  LKK VA+G LVKVKNSFK
Sbjct:   50 SHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFK 116
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P27806|H1_WHEAT (Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.609e-20
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 0 
Query:   21 SHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHK-ELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLA 89
            +HP++A M+SEAI +LKER+GSS  AI KFIE KHK  LP  ++K++L Q+KK VAAG L KVK S+KLA
Sbjct:   54 AHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKLA 123
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P26568|H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.424e-20
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 0 
Query:   21 SHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKL 88
            SHPT+  MI +AI +LKERTGSSQYAI KFIE K KELPPT++KL+L+ LK+ VA+G LVKVK SFKL
Sbjct:   61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P08283|H1_PEA (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.855e-17
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 0 
Query:   21 SHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLA 89
            SHPT+  MI +AI SLKE+ GSSQYAI KFIE K K+LP  +KKL+L  LKK+VA+G L+KVK SFKL+
Sbjct:   61 SHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGSFKLS 129
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P40267|H1_SOLPN (Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.625e-17
Identity = 35/73 (47.95%), Postives = 53/73 (72.60%), Query Frame = 0 
Query:   18 KHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHK-ELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLA 89
            K ++HP +  MI EA+ +L E+ GSS YA+ K++E KHK ELP  ++K++ +QLK S A G L+K+K S+KL+
Sbjct:   45 KAVTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLS 117
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P54671|H1_DICDI (Histone H1 OS=Dictyostelium discoideum OX=44689 GN=H1 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.281e-15
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 0 
Query:   21 SHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLA 89
            +HPT+ VMIS AI   K+RTGSSQ AI K+IE  +   P T+K  + + LK+ VA GTL  VK S+KL+
Sbjct:   23 NHPTYQVMISTAIAHYKDRTGSSQPAIIKYIEANYNVAPDTFKTQLKLALKRLVAKGTLTMVKASYKLS 91
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P37218|H1_SOLLC (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.204e-15
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 0 
Query:   21 SHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKL 88
            +HP +  MI +AI +LKERTGSSQ+AITKFIE K K LP  +KKL+L QLKK VA+  LVKVKNS+KL
Sbjct:   55 THPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSYKL 122
[Close]
BLAST of Vum_08G01288.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9FYS5|HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 5.296e-10
Identity = 25/64 (39.06%), Postives = 41/64 (64.06%), Query Frame = 0 
Query:   23 PTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSF 86
            P +  MI  AI  L +++GS++ AI+K+IEGK+  LPP +  L+   L +   +G LV +KN++
Sbjct:   13 PPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHLARMKESGELVFLKNNY 76
The following BLAST results are available for this feature:
BLAST of Vum_08G01288.1 vs. Araport11
Analysis Date: 2024-06-26 (Vigna umbellata FF25 genome v1.0)
Total hits: 7
Match NameE-valueIdentityDescription
|2.465e-2765.00Symbols: H1.2, HON2 | Histone 1.2 | chr2:13045360-... [more]
|5.354e-2765.00Symbols: H1.2, HON2 | Histone 1.2 | chr2:13045360-... [more]
|2.489e-2170.59Symbols: H1.1, HON1 | Histone 1.1 | chr1:2076687-2... [more]
|3.071e-1743.93Symbols: HON3, HIS1-3 | histone H1-3 | chr2:784609... [more]
|1.468e-1545.00Symbols: HON3, HIS1-3 | histone H1-3 | chr2:784625... [more]
|1.747e-835.82Symbols: HMGA | high mobility group A | chr1:51386... [more]
|4.464e-835.71Symbols: no symbol available | no full name availa... [more]
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BLAST of Vum_08G01288.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-05 (Blastp of Vigna umbellata FF25 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A0S3SQ54|A0A0S3SQ54_PHAAN6.082e-11198.41H15 domain-containing protein OS=Vigna angularis v... [more]
tr|A0A0L9THA2|A0A0L9THA2_PHAAN6.082e-11198.41Histone protein OS=Phaseolus angularis OX=3914 GN=... [more]
tr|A0A1S3V1P9|A0A1S3V1P9_VIGRR1.140e-5393.16Histone H1 OS=Vigna radiata var. radiata OX=3916 G... [more]
tr|A0A371G8Z6|A0A371G8Z6_MUCPR1.082e-4978.69Histone H1.2 (Fragment) OS=Mucuna pruriens OX=1576... [more]
tr|V7BJS9|V7BJS9_PHAVU3.955e-4281.36H15 domain-containing protein OS=Phaseolus vulgari... [more]
tr|A0A8B8M9W5|A0A8B8M9W5_ABRPR2.710e-4179.35Histone H1-like OS=Abrus precatorius OX=3816 GN=LO... [more]
tr|A0A445ING3|A0A445ING3_GLYSO4.917e-4175.61Histone H1.2 OS=Glycine soja OX=3848 GN=D0Y65_0272... [more]
tr|A0A0B2Q3X5|A0A0B2Q3X5_GLYSO1.278e-4087.91Histone H1.2 OS=Glycine soja OX=3848 GN=glysoja_03... [more]
tr|I1LBM9|I1LBM9_SOYBN1.677e-4074.80H15 domain-containing protein OS=Glycine max OX=38... [more]
tr|C6THP7|C6THP7_SOYBN4.705e-4073.98H15 domain-containing protein OS=Glycine max OX=38... [more]
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BLAST of Vum_08G01288.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-05 (Blastp of Vigna umbellata FF25 v1.0 proteins vs UniProt Swissprot )
Total hits: 10
Match NameE-valueIdentityDescription
sp|P26569|H12_ARATH5.196e-2665.00Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At... [more]
sp|P23444|H1_MAIZE8.259e-2365.71Histone H1 OS=Zea mays OX=4577 PE=2 SV=2[more]
sp|Q9M5W4|H1_EUPES1.106e-2170.15Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1[more]
sp|P27806|H1_WHEAT1.609e-2061.43Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2[more]
sp|P26568|H11_ARATH2.424e-2070.59Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At... [more]
sp|P08283|H1_PEA2.855e-1765.22Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1[more]
sp|P40267|H1_SOLPN6.625e-1747.95Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1[more]
sp|P54671|H1_DICDI1.281e-1552.17Histone H1 OS=Dictyostelium discoideum OX=44689 GN... [more]
sp|P37218|H1_SOLLC3.204e-1566.18Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV... [more]
sp|Q9FYS5|HMGYA_MAIZE5.296e-1039.06HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMG... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna umbellata FF25 genome v1.0
Date Performed: 2024-08-05
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005819Linker histone H1/H5PRINTSPR00624HISTONEH5coord: 112..126
score: 39.26
coord: 145..162
score: 33.33
coord: 35..52
score: 43.21
coord: 167..186
score: 31.67
coord: 8..29
score: 33.84
IPR005818Linker histone H1/H5, domain H15PFAMPF00538Linker_histonecoord: 22..89
e-value: 3.4E-13
score: 60.9
IPR005818Linker histone H1/H5, domain H15PROSITEPS51504H15coord: 21..90
score: 28.326349
IPR005818Linker histone H1/H5, domain H15CDDcd00073H15coord: 21..100
e-value: 2.18699E-17
score: 71.4983
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 17..94
e-value: 1.7E-18
score: 68.4
NoneNo IPR availablePANTHERPTHR11467HISTONE H1coord: 12..186
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 19..97

Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigUmbe.FF25.1.0.Vum_08G01288.1 ID=drVigUmbe.FF25.1.0.Vum_08G01288.1; Name=Vum_08G01288.1; organism=Vigna umbellata; type=mRNA; length=570bp
ATGTCTACCGCAGCGCAACCCAAAGTTAAGAAAACAGCTGCGACCACCAA
GAAACACCTCTCTCACCCTACCTTTGCCGTGATGATATCGGAGGCTATTA
CAAGTCTGAAGGAGAGAACTGGTTCAAGCCAATATGCGATAACAAAGTTC
ATCGAAGGGAAGCACAAGGAGTTGCCACCAACCTACAAGAAACTTGTACT
CATTCAGCTCAAGAAATCTGTTGCTGCTGGCACGCTTGTCAAGGTTAAAA
ACTCCTTTAAACTTGCACCCACTAAACCTGTCTCTGCTCCTTCTGCTAAG
GTTGGTGTTGCTGCTCCTAAAAAGCCCAAGTCTGTTACCAAGACCACCAC
CAAGGCTGCTTCTAAGCCCAAGCCTGCTCCTAAGAAGAAGCCCGTGTCTA
AGTCCAAGGCTAAGACTGCTGCTGTAGCTGTCAAGCCCAAGGCTAAGCCT
GCCAAGAAGGTTGTTGCCAAGTCTGCCAAGAAGACTCCCGTAAAAGCGGT
GAAGAAGCCCAAGAGTGTGGTGAAGAAACCCAAGAGCGTGAAATCTCCAG
CCAAGAAGACCAAGAAGTGA
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protein sequence of drVigUmbe.FF25.1.0.Vum_08G01288.1

>drVigUmbe.FF25.1.0.Vum_08G01288.1 ID=drVigUmbe.FF25.1.0.Vum_08G01288.1; Name=drVigUmbe.FF25.1.0.Vum_08G01288.1; organism=Vigna umbellata; type=polypeptide; length=189bp
MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKF
IEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPVSAPSAK
VGVAAPKKPKSVTKTTTKAASKPKPAPKKKPVSKSKAKTAAVAVKPKAKP
AKKVVAKSAKKTPVKAVKKPKSVVKKPKSVKSPAKKTKK
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mRNA from alignment at Chr8:13574154..13574811-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigUmbe.FF25.1.0.Vum_08G01288.1 ID=drVigUmbe.FF25.1.0.Vum_08G01288.1; Name=Vum_08G01288.1; organism=Vigna umbellata; type=mRNA; length=658bp; location=Sequence derived from: Chr8:13574154..13574811- (Vigna umbellata
ATGTCTACCGCAGCGCAACCCAAAGTTAAGAAAACAGCTGCGACCACCAA
GAAACACCTCTCTCACCCTACCTTTGCCGTGGTACTTTCCAATGAATTTT
TCAATTCAATTAATCTCATGCTCTTATCTTATTTCAGTTTGTTTATTTAT
GAATTTGTGTGTGTTGAAGATGATATCGGAGGCTATTACAAGTCTGAAGG
AGAGAACTGGTTCAAGCCAATATGCGATAACAAAGTTCATCGAAGGGAAG
CACAAGGAGTTGCCACCAACCTACAAGAAACTTGTACTCATTCAGCTCAA
GAAATCTGTTGCTGCTGGCACGCTTGTCAAGGTTAAAAACTCCTTTAAAC
TTGCACCCACTAAACCTGTCTCTGCTCCTTCTGCTAAGGTTGGTGTTGCT
GCTCCTAAAAAGCCCAAGTCTGTTACCAAGACCACCACCAAGGCTGCTTC
TAAGCCCAAGCCTGCTCCTAAGAAGAAGCCCGTGTCTAAGTCCAAGGCTA
AGACTGCTGCTGTAGCTGTCAAGCCCAAGGCTAAGCCTGCCAAGAAGGTT
GTTGCCAAGTCTGCCAAGAAGACTCCCGTAAAAGCGGTGAAGAAGCCCAA
GAGTGTGGTGAAGAAACCCAAGAGCGTGAAATCTCCAGCCAAGAAGACCA
AGAAGTGA
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Coding sequence (CDS) from alignment at Chr8:13574154..13574811-

>drVigUmbe.FF25.1.0.Vum_08G01288.1 ID=drVigUmbe.FF25.1.0.Vum_08G01288.1; Name=Vum_08G01288.1; organism=Vigna umbellata; type=CDS; length=570bp; location=Sequence derived from: Chr8:13574154..13574811- (Vigna umbellata
ATGTCTACCGCAGCGCAACCCAAAGTTAAGAAAACAGCTGCGACCACCAA
GAAACACCTCTCTCACCCTACCTTTGCCGTGATGATATCGGAGGCTATTA
CAAGTCTGAAGGAGAGAACTGGTTCAAGCCAATATGCGATAACAAAGTTC
ATCGAAGGGAAGCACAAGGAGTTGCCACCAACCTACAAGAAACTTGTACT
CATTCAGCTCAAGAAATCTGTTGCTGCTGGCACGCTTGTCAAGGTTAAAA
ACTCCTTTAAACTTGCACCCACTAAACCTGTCTCTGCTCCTTCTGCTAAG
GTTGGTGTTGCTGCTCCTAAAAAGCCCAAGTCTGTTACCAAGACCACCAC
CAAGGCTGCTTCTAAGCCCAAGCCTGCTCCTAAGAAGAAGCCCGTGTCTA
AGTCCAAGGCTAAGACTGCTGCTGTAGCTGTCAAGCCCAAGGCTAAGCCT
GCCAAGAAGGTTGTTGCCAAGTCTGCCAAGAAGACTCCCGTAAAAGCGGT
GAAGAAGCCCAAGAGTGTGGTGAAGAAACCCAAGAGCGTGAAATCTCCAG
CCAAGAAGACCAAGAAGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005819H1/H5
IPR005818Histone_H1/H5_H15
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0030527structural constituent of chromatin
GO:0003677DNA binding