XM_058881969.1
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of XM_058881969.1 vs. ExPASy TrEMBL (2024)
Match: tr|C6TIW8|C6TIW8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.368e-18 Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 0 Query: 30 VIKSEDLLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVK 72 ++KS D LDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVK Sbjct: 116 LLKSVDSLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVK 158
BLAST of XM_058881969.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SDD9|A0A151SDD9_CAJCA (Cell cycle checkpoint protein RAD1 OS=Cajanus cajan OX=3821 GN=KK1_025341 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.891e-18 Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 0 Query: 30 VIKSEDLLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKAWVVYKEA----NWVSSILWMIL 91 ++KS D LDASICAEIRTRIPDTIAWDYNFEPAG NPLTFTVK+ + KEA W S + +IL Sbjct: 112 LLKSVDSLDASICAEIRTRIPDTIAWDYNFEPAGTNPLTFTVKSAAL-KEAIEDLEWPGSSIQIIL 176
BLAST of XM_058881969.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1NEX7|I1NEX7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100805068 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.390e-18 Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 0 Query: 30 VIKSEDLLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKAWVVYKEA 80 ++KS D LDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVK+ + KEA Sbjct: 111 LLKSVDSLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKSAAL-KEA 160
BLAST of XM_058881969.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445F2R3|A0A445F2R3_GLYSO (Cell cycle checkpoint protein RAD1 OS=Glycine soja OX=3848 GN=D0Y65_053641 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.690e-18 Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 0 Query: 30 VIKSEDLLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKAWVVYKEA 80 ++KS D LDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVK+ + KEA Sbjct: 116 LLKSVDSLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKSAAL-KEA 165
BLAST of XM_058881969.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1NEX4|I1NEX4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100805068 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.690e-18 Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 0 Query: 30 VIKSEDLLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKAWVVYKEA 80 ++KS D LDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVK+ + KEA Sbjct: 116 LLKSVDSLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKSAAL-KEA 165
BLAST of XM_058881969.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7CHL1|V7CHL1_PHAVU (Cell cycle checkpoint protein RAD1 OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G283200g PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.440e-18 Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 0 Query: 30 VIKSEDLLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKAWVVYKEA----NWVSSILWMIL 91 ++KS D LDASICAEIRTRIPDTIAW+YNFEPAGANPLTFTVK+ + KEA W S + +IL Sbjct: 117 LLKSVDSLDASICAEIRTRIPDTIAWNYNFEPAGANPLTFTVKSAAL-KEAIEDLEWPGSSIEIIL 181
BLAST of XM_058881969.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86SX07|A0AA86SX07_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS10546 PE=4 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 7.591e-18 Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 0 Query: 30 VIKSEDLLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKAWVVYKEA----NWVSSILWMIL 91 ++KS D LD+SICAEIRTRIPDTI WDYNFEPAGANPLTFTVK+ + KEA W S + +IL Sbjct: 117 LLKSVDSLDSSICAEIRTRIPDTIGWDYNFEPAGANPLTFTVKSAAL-KEAIEDLEWPGSSIQIIL 181
BLAST of XM_058881969.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445CHG8|A0A445CHG8_ARAHY (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A07g036951 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 8.628e-18 Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 0 Query: 12 TPAELREYVQDIRFVRLPVIKSEDLLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKAWVVYKEA----NWVSSILWMIL 91 TP +++ D++ + +KS D +DASICAEIRTRIP+TIAWDYNFEPAG NPLTFTVK+ + KEA W S + +IL Sbjct: 102 TPIQIQYPGPDMQLL----LKSVDSMDASICAEIRTRIPETIAWDYNFEPAGTNPLTFTVKSAAL-KEAIEDLEWPGSSIQVIL 180
BLAST of XM_058881969.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2Z6NEU0|A0A2Z6NEU0_TRISU (Cell cycle checkpoint protein RAD1 OS=Trifolium subterraneum OX=3900 GN=TSUD_367560 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.042e-17 Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0 Query: 30 VIKSEDLLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKAWVVYKEA 80 ++KS D LDASICAEIRTRIPDTIAWDYNFEPAG NPLTFTVK+ + KEA Sbjct: 114 LLKSVDSLDASICAEIRTRIPDTIAWDYNFEPAGTNPLTFTVKSAAL-KEA 163
BLAST of XM_058881969.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4XKU6|A0A9D4XKU6_PEA (Uncharacterized protein OS=Pisum sativum OX=3888 GN=KIW84_044551 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.220e-17 Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0 Query: 30 VIKSEDLLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKAWVVYKEA 80 ++KS D DASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVK+ + KEA Sbjct: 114 ILKSVDSPDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKSAAL-KEA 163
BLAST of XM_058881969.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:9872324-9873257 FORWARD LENGTH=185) HSP 1 Score: 63.1586 bits (152), Expect = 1.624e-13 Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 0 Query: 30 VIKSEDLLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKAWVVYKEA 80 ++KS D L++ I +EIRTRIP+T+ WDYNFE AG PLTFTVK+ + KEA Sbjct: 4 LLKSVDTLNSCIYSEIRTRIPETVTWDYNFEQAGIAPLTFTVKSAAL-KEA 53
BLAST of XM_058881969.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:9871820-9873257 FORWARD LENGTH=300) HSP 1 Score: 63.5438 bits (153), Expect = 4.815e-13 Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 0 Query: 30 VIKSEDLLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKAWVVYKEA 80 ++KS D L++ I +EIRTRIP+T+ WDYNFE AG PLTFTVK+ + KEA Sbjct: 119 LLKSVDTLNSCIYSEIRTRIPETVTWDYNFEQAGIAPLTFTVKSAAL-KEA 168 The following BLAST results are available for this feature:
BLAST of XM_058881969.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-12 (Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of XM_058881969.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-12 (Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of XM_058881969.1 vs. Araport11
Analysis Date: 2024-08-12 (Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs arabidopsis Araport11) Total hits: 2
InterPro
Analysis Name: InterProScan Analysis for Vicia villosa cv. AU Merit genome v1.0
Date Performed: 2024-08-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >drVicVill.AUMerit.1.0.rna-XM_058881969.1 ID=drVicVill.AUMerit.1.0.rna-XM_058881969.1; Name=XM_058881969.1; organism=Vicia villosa; type=mRNA; length=312bpback to top protein sequence of drVicVill.AUMerit.1.0.rna-XM_058881969.1 >drVicVill.AUMerit.1.0.rna-XM_058881969.1 ID=drVicVill.AUMerit.1.0.rna-XM_058881969.1; Name=drVicVill.AUMerit.1.0.rna-XM_058881969.1; organism=Vicia villosa; type=polypeptide; length=103bpback to top mRNA from alignment at LG6:134362685..134371375- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>drVicVill.AUMerit.1.0.rna-XM_058881969.1 ID=drVicVill.AUMerit.1.0.rna-XM_058881969.1; Name=XM_058881969.1; organism=Vicia villosa; type=mRNA; length=8691bp; location=Sequence derived from: LG6:134362685..134371375- (Vicia villosaback to top Coding sequence (CDS) from alignment at LG6:134362685..134371375- >drVicVill.AUMerit.1.0.rna-XM_058881969.1 ID=drVicVill.AUMerit.1.0.rna-XM_058881969.1; Name=XM_058881969.1; organism=Vicia villosa; type=CDS; length=888bp; location=Sequence derived from: LG6:134362685..134371375- (Vicia villosaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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