XM_058925102.1

Transcript Overview
NameXM_058925102.1
Unique NamedrVicVill.AUMerit.1.0.rna-XM_058925102.1
TypemRNA
OrganismVicia villosa (vetch)
Sequence length363
References
External references for this mRNA
DatabaseAccession
GeneID131655209
GenBankXM_058925102.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
LG3chromosomeLG3:25743835..25744923 -Vicia villosa cv. AU Merit genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anvvaL0344Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvvaL287Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvvaL0393Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carvvaL269Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
carvvaL384Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
psvvaL475Pisum sativum Cameor genome v1aPisum sativum
avjvvaL567Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvvaL0768Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
psvvaL711Pisum sativum Cameor genome v1aPisum sativum
avjvvaL810Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
pvvvaL038Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vasvvaL070Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvvaL283Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvvaL378Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvvaL897Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vfhvvaL260Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvvaL428Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvvaL558Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvvaL409Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vstvvaL073Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vvavvaR142Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vvavvaR179Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvvaL290Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvvaL385Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vssvvaL328Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvvaL372Vicia sativa cv. Studenica genome v1.0Vicia sativa
vumvvaL426Vigna umbellata FF25 genome v1.0Vigna umbellata
vssvvaL534Vicia sativa cv. Studenica genome v1.0Vicia sativa
vumvvaL521Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaL680Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vssvvaL736Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvvaL776Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
jg35576.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun09g221400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun08g041300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014645761.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.3g211120.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
jg20290.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat6g022440.1Pisum sativum Cameor genome v1aPisum sativum
Vigan.01G492300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_014648283.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigst.03G156400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
evm.Ca_v2.0_11677Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
Vum_02G00543.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.Ca_v2.0_14896Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
Vum_03G01744.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-TanjilR_30671Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigst.02G051200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-TanjilR_09852Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigst.01G341600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
jg55212.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.001G039200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Hedin2.R1.2g175400.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigan.03G250200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va01G094710.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg55116.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.009G081400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
XM_058930064.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
XM_058871116.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LOC131655209drVicVill.AUMerit.1.0.gene-LOC131655209Vicia villosagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_058925102.1-4drVicVill.AUMerit.1.0.exon-XM_058925102.1-4Vicia villosaexon
exon-XM_058925102.1-3drVicVill.AUMerit.1.0.exon-XM_058925102.1-3Vicia villosaexon
exon-XM_058925102.1-2drVicVill.AUMerit.1.0.exon-XM_058925102.1-2Vicia villosaexon
exon-XM_058925102.1-1drVicVill.AUMerit.1.0.exon-XM_058925102.1-1Vicia villosaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
XP_058781085.1drVicVill.AUMerit.1.0.cds-XP_058781085.1_4Vicia villosaCDS
XP_058781085.1drVicVill.AUMerit.1.0.cds-XP_058781085.1_3Vicia villosaCDS
XP_058781085.1drVicVill.AUMerit.1.0.cds-XP_058781085.1_2Vicia villosaCDS
XP_058781085.1drVicVill.AUMerit.1.0.cds-XP_058781085.1Vicia villosaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVicVill.AUMerit.1.0.rna-XM_058925102.1drVicVill.AUMerit.1.0.rna-XM_058925102.1Vicia villosapolypeptide
drVicVill.AUMerit.1.0.rna-XM_058925102.1drVicVill.AUMerit.1.0.rna-XM_058925102.1-proteinVicia villosapolypeptide


Homology
[Close]
BLAST of XM_058925102.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A396IYB7|A0A396IYB7_MEDTR (Putative photosystem II OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr3g0136171 PE=4 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.744e-71
Identity = 111/120 (92.50%), Postives = 115/120 (95.83%), Query Frame = 0 
Query:    1 MASASFATALPLSSSTQNKLKNPSSQSLFRPLPVTQPKRITQSKSKVVINASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 120
            MAS S ATALPL S+TQNKLKNPSS+S FRPLP+TQPKRITQSKSKV INASLKEKAVTA+TAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA
Sbjct:   24 MASTSVATALPLGSATQNKLKNPSSESFFRPLPITQPKRITQSKSKVEINASLKEKAVTAITAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 143
[Close]
BLAST of XM_058925102.1 vs. ExPASy TrEMBL (2024)
Match: tr|G7J8E2|G7J8E2_MEDTR (Ultraviolet-B-repressible protein OS=Medicago truncatula OX=3880 GN=11442239 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.222e-71
Identity = 111/120 (92.50%), Postives = 115/120 (95.83%), Query Frame = 0 
Query:    1 MASASFATALPLSSSTQNKLKNPSSQSLFRPLPVTQPKRITQSKSKVVINASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 120
            MAS S ATALPL S+TQNKLKNPSS+S FRPLP+TQPKRITQSKSKV INASLKEKAVTA+TAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA
Sbjct:    1 MASTSVATALPLGSATQNKLKNPSSESFFRPLPITQPKRITQSKSKVEINASLKEKAVTAITAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 120
[Close]
BLAST of XM_058925102.1 vs. ExPASy TrEMBL (2024)
Match: tr|I3S117|I3S117_MEDTR (Photosystem II OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.619e-70
Identity = 110/120 (91.67%), Postives = 114/120 (95.00%), Query Frame = 0 
Query:    1 MASASFATALPLSSSTQNKLKNPSSQSLFRPLPVTQPKRITQSKSKVVINASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 120
            MAS S ATALPL S+TQNKLKNPSS+S FRPLP+TQPKRITQSKSK  INASLKEKAVTA+TAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA
Sbjct:    1 MASTSVATALPLGSATQNKLKNPSSESFFRPLPITQPKRITQSKSKFEINASLKEKAVTAITAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 120
[Close]
BLAST of XM_058925102.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4WKL7|A0A9D4WKL7_PEA (Ultraviolet-B-repressible protein OS=Pisum sativum OX=3888 GN=KIW84_051215 PE=4 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 4.248e-70
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0 
Query:    1 MASASFATALPLSSSTQNKLKNPSSQSLFRPLPVTQPKRITQSKSKVVINASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 120
            MASAS A ALPLSS+TQNKLKNPSS+S FRPL VTQPKR TQ+KSKV INASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA
Sbjct:   34 MASASVARALPLSSATQNKLKNPSSESFFRPLHVTQPKRTTQTKSKVEINASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 153
[Close]
BLAST of XM_058925102.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A392QD90|A0A392QD90_9FABA (Ultraviolet-B-repressible protein OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.394e-66
Identity = 105/120 (87.50%), Postives = 110/120 (91.67%), Query Frame = 0 
Query:    1 MASASFATALPLSSSTQNKLKNPSSQSLFRPLPVTQPKRITQSKSKVVINASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 120
            MASAS AT LPLSS TQNKLKNPSS+S FRPLPVTQPKRIT+SKSK+ I+ASLKEK V  LTAASLTASMVIP+VAHAAGSDLSPSLQNFLLSIFAGGAVL AI GAVIGVSNFDPVKRA
Sbjct:    1 MASASCATVLPLSSGTQNKLKNPSSESFFRPLPVTQPKRITKSKSKLEIHASLKEKTVVGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLAAIFGAVIGVSNFDPVKRA 120
[Close]
BLAST of XM_058925102.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2K3JZK1|A0A2K3JZK1_TRIPR (Ultraviolet-B-repressible protein OS=Trifolium pratense OX=57577 GN=L195_g051437 PE=4 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 6.152e-66
Identity = 104/120 (86.67%), Postives = 110/120 (91.67%), Query Frame = 0 
Query:    1 MASASFATALPLSSSTQNKLKNPSSQSLFRPLPVTQPKRITQSKSKVVINASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 120
            MASAS AT LPLSS TQNKLKNPS++S FRPLPVTQPKRIT+SKSK+ I+ASLKEK V  LTAASLTASMVIP+VAHAAGSDLSPSLQNFLLSIFAGGAVL AI GAVIGVSNFDPVKRA
Sbjct:    1 MASASCATVLPLSSGTQNKLKNPSTESFFRPLPVTQPKRITKSKSKLEIHASLKEKTVAGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLAAIFGAVIGVSNFDPVKRA 120
[Close]
BLAST of XM_058925102.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2K3N2F1|A0A2K3N2F1_TRIPR (Ultraviolet-B-repressible protein OS=Trifolium pratense OX=57577 GN=L195_g020411 PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 3.760e-65
Identity = 104/120 (86.67%), Postives = 109/120 (90.83%), Query Frame = 0 
Query:    1 MASASFATALPLSSSTQNKLKNPSSQSLFRPLPVTQPKRITQSKSKVVINASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 120
            MASAS ATALPLSS  QNKLKNPSS+S FRPLPVTQPKRI +SKSK+ I+ASLKEK V  LTAASLTASMVIP+VAHAAGSDLSPSLQNFLLSIFAGGAVL AI GAVIGVSNFDPVKRA
Sbjct:    1 MASASCATALPLSSGIQNKLKNPSSESFFRPLPVTQPKRIIKSKSKLEIHASLKEKTVAGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLAAIFGAVIGVSNFDPVKRA 120
[Close]
BLAST of XM_058925102.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2Z6M5W8|A0A2Z6M5W8_TRISU (Ultraviolet-B-repressible protein OS=Trifolium subterraneum OX=3900 GN=TSUD_314850 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 5.119e-64
Identity = 103/120 (85.83%), Postives = 108/120 (90.00%), Query Frame = 0 
Query:    1 MASASFATALPLSSSTQNKLKNPSSQSLFRPLPVTQPKRITQSKSKVVINASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 120
            MASAS AT LPLSS  QNKLKNPSS+S FRPLPVTQPKRIT+SKSK+ I+ASLKEK V  LTAASLTASMVIP+VA AAGSDLSPSLQNFLLSIFAGGAVL AI GAVIGVSNFDPVKRA
Sbjct:    1 MASASCATVLPLSSGIQNKLKNPSSESFFRPLPVTQPKRITKSKSKLEIHASLKEKTVAGLTAASLTASMVIPEVAQAAGSDLSPSLQNFLLSIFAGGAVLAAIFGAVIGVSNFDPVKRA 120
[Close]
BLAST of XM_058925102.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S2YAY7|A0A1S2YAY7_CICAR (Uncharacterized protein LOC101502251 OS=Cicer arietinum OX=3827 GN=LOC101502251 PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 6.169e-64
Identity = 101/120 (84.17%), Postives = 109/120 (90.83%), Query Frame = 0 
Query:    1 MASASFATALPLSSSTQNKLKNPSSQSLFRPLPVTQPKRITQSKSKVVINASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 120
            MASAS ATALPL S+TQN LK PSS+S FRPLPV QPKR+T SKSK+ I+ASLK+KAVT LTAASLTASMVIP+VAHAAGSDLSPSLQNFLLSIFAGGAVLTAI GAV GV+NFDPVKRA
Sbjct:    1 MASASVATALPLRSATQNSLKRPSSESFFRPLPVKQPKRVTHSKSKLEIHASLKQKAVTGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLTAIFGAVFGVANFDPVKRA 120
[Close]
BLAST of XM_058925102.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4P1QWU9|A0A4P1QWU9_LUPAN (Ultraviolet-B-repressible protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_09852 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.656e-52
Identity = 92/122 (75.41%), Postives = 100/122 (81.97%), Query Frame = 0 
Query:    2 ASASFATALPLSSSTQNKLKNPSSQSLFRPLPVTQPKRIT----QSKSKVVINASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKR 119
            +SAS +  LPL+S+TQNKL  PSS S F+PL + Q KRI      SK+KV I ASLKEKAVTALTAASLTASMVIP+VAHAAGSDLSPSL NFLLSIFAGG VL AI GAVIGVSNFDPVKR
Sbjct:    3 SSASISMVLPLTSATQNKLSQPSSGSFFKPLNIRQQKRILFTKPVSKTKVGIQASLKEKAVTALTAASLTASMVIPEVAHAAGSDLSPSLNNFLLSIFAGGVVLGAIFGAVIGVSNFDPVKR 124
[Close]
BLAST of XM_058925102.1 vs. Araport11
Match: | (Symbols: PSBX | photosystem II subunit X | chr2:2587868-2588218 REVERSE LENGTH=116)

HSP 1 Score: 85.1149 bits (209), Expect = 2.504e-22
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 0 
Query:   20 LKNPSSQSLFRPLPVTQPKRITQSKSK---VVINASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKR 119
            L    S    +PLP+   K +  +  +   + + A   +KA+T ++AA+LTASMVIP++A AAGS +SPSL+NFLLSI +GG VLT I+G V+GVSNFDPVKR
Sbjct:   13 LNQTRSSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKALTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVKR 115
The following BLAST results are available for this feature:
BLAST of XM_058925102.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-12 (Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A396IYB7|A0A396IYB7_MEDTR1.744e-7192.50Putative photosystem II OS=Medicago truncatula OX=... [more]
tr|G7J8E2|G7J8E2_MEDTR2.222e-7192.50Ultraviolet-B-repressible protein OS=Medicago trun... [more]
tr|I3S117|I3S117_MEDTR1.619e-7091.67Photosystem II OS=Medicago truncatula OX=3880 PE=2... [more]
tr|A0A9D4WKL7|A0A9D4WKL7_PEA4.248e-7092.50Ultraviolet-B-repressible protein OS=Pisum sativum... [more]
tr|A0A392QD90|A0A392QD90_9FABA2.394e-6687.50Ultraviolet-B-repressible protein OS=Trifolium med... [more]
tr|A0A2K3JZK1|A0A2K3JZK1_TRIPR6.152e-6686.67Ultraviolet-B-repressible protein OS=Trifolium pra... [more]
tr|A0A2K3N2F1|A0A2K3N2F1_TRIPR3.760e-6586.67Ultraviolet-B-repressible protein OS=Trifolium pra... [more]
tr|A0A2Z6M5W8|A0A2Z6M5W8_TRISU5.119e-6485.83Ultraviolet-B-repressible protein OS=Trifolium sub... [more]
tr|A0A1S2YAY7|A0A1S2YAY7_CICAR6.169e-6484.17Uncharacterized protein LOC101502251 OS=Cicer arie... [more]
tr|A0A4P1QWU9|A0A4P1QWU9_LUPAN6.656e-5275.41Ultraviolet-B-repressible protein OS=Lupinus angus... [more]
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BLAST of XM_058925102.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-12 (Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of XM_058925102.1 vs. Araport11
Analysis Date: 2024-08-12 (Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
|2.504e-2251.46Symbols: PSBX | photosystem II subunit X | chr2:25... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia villosa cv. AU Merit genome v1.0
Date Performed: 2024-08-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableFUNFAMG3DSA:1.20.5.510:FF:000006coord: 82..120
e-value: 1.4E-19
score: 71.3
NoneNo IPR availableGENE3D1.20.5.510Single helix bincoord: 83..120
e-value: 1.7E-10
score: 42.5
NoneNo IPR availablePANTHERPTHR34455OS07G0673550 PROTEINcoord: 1..119
IPR009518Photosystem II PsbXPFAMPF06596PsbXcoord: 84..119
e-value: 2.6E-12
score: 57.8

Sequences
The following sequences are available for this feature:

mRNA sequence

>drVicVill.AUMerit.1.0.rna-XM_058925102.1 ID=drVicVill.AUMerit.1.0.rna-XM_058925102.1; Name=XM_058925102.1; organism=Vicia villosa; type=mRNA; length=363bp
ATGGCTTCTGCTTCTTTTGCAACAGCTCTACCACTTAGTTCTTCAACCCA
AAACAAGCTGAAAAACCCATCCTCCCAATCCCTTTTCAGACCACTACCAG
TAACACAACCAAAGAGAATCACACAGTCAAAATCCAAGGTTGTGATCAAT
GCATCTTTGAAAGAGAAGGCAGTGACAGCACTTACAGCTGCATCCTTGAC
AGCTTCCATGGTAATTCCTGATGTGGCTCATGCAGCTGGATCTGATCTCT
CACCTTCTCTCCAGAACTTTCTGCTAAGCATTTTTGCTGGTGGAGCTGTG
TTAACTGCTATACTTGGAGCTGTTATTGGAGTTTCCAACTTTGATCCTGT
TAAGAGAGCTTAA
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protein sequence of drVicVill.AUMerit.1.0.rna-XM_058925102.1

>drVicVill.AUMerit.1.0.rna-XM_058925102.1 ID=drVicVill.AUMerit.1.0.rna-XM_058925102.1; Name=drVicVill.AUMerit.1.0.rna-XM_058925102.1; organism=Vicia villosa; type=polypeptide; length=120bp
MASASFATALPLSSSTQNKLKNPSSQSLFRPLPVTQPKRITQSKSKVVIN
ASLKEKAVTALTAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAV
LTAILGAVIGVSNFDPVKRA
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mRNA from alignment at LG3:25743835..25744923-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVicVill.AUMerit.1.0.rna-XM_058925102.1 ID=drVicVill.AUMerit.1.0.rna-XM_058925102.1; Name=XM_058925102.1; organism=Vicia villosa; type=mRNA; length=1089bp; location=Sequence derived from: LG3:25743835..25744923- (Vicia villosa
TCATTCTCATCCGTCTGTTTATTGTTTCATTTCATACTGTTTGTTACCTT
CAAAATAATCTCCAATTAATGAATACTCACTAGCTAGCAATGGCCTTGTC
CCCCTCTACATCATTATGCATTCTCCCAACTAACCCAATCACTCCAACAC
CCAAATTCAGATTCTCAACTAACCTTGTTTTTACTGTGAATTTGCCAAGG
AAATTATCCATTAGAAGCTCTGGTGAAAGCTCTGCAGGAGCAACAGAGGT
AGATTCAGAGGATTCCATTGAGCTTCCAAAAGAATCGTCATCTTTAATTT
CTACTCTCAATGTAGAAAGAGCTCTCCGTGGTATACGTAAGTTTTCAATG
TGTATGTTAATTAATAATATTGTTATTATAATTTATAGTCCTAAAACAGC
ATCGAATTGATGAAGATATGGTTTAGAATGCAGCAATAACAGACGCAGAT
CATTATGGTAGACTTGGATTACCAAGAGGATGTCCTTATGACATGGTGCC
AGTTGCGTATAACAACAAGGTTCAAGAATTGGAGAGTCAAGATTTAGAGA
AAGACATACTCAACAAGAAATTGGAGCTTCTCAGAGTCAGTAGTTGAATA
TCTTTGTATTTGCATTATTTGTTACATGATGCGATGATTTGATTAACTTT
TGTTTGTATAGGAATCATACACCATCATGTCAACACCAGAAGAAAGAAGA
ATGTATGACTGGAGTTTGGCCAGAGAAGGTAACACAGAAAAATTCATTTG
GCCATATGAGGTTGATATCCTAGGGATTGAAAAAGGAGAGCCTCCAGCAC
AGGTACAATTGATTTTGAATGAATGAACTATGTAACATTGATTTAAGTTA
AATGATAAATTATGACAATATTTTCACTTTTCATGGCAGGAACCTGAGGA
TGTTGGACCAACCAGACTGGTTGGATACTTCCTTGTGGGATGGATAGTGC
TAGCATTTGTGTTATCAATTGGACTAAACTTATAGAAACAATTCTATGTA
TATTATGCACAACCTATGAAATTTTTATCCCCAAAAAACATGATGTAATG
TAATGGAAAAATGTTTCAATTGAATGAAACTCTAGTTTC
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Coding sequence (CDS) from alignment at LG3:25743835..25744923-

>drVicVill.AUMerit.1.0.rna-XM_058925102.1 ID=drVicVill.AUMerit.1.0.rna-XM_058925102.1; Name=XM_058925102.1; organism=Vicia villosa; type=CDS; length=636bp; location=Sequence derived from: LG3:25743835..25744923- (Vicia villosa
ATGGCCTTGTCCCCCTCTACATCATTATGCATTCTCCCAACTAACCCAAT
CACTCCAACACCCAAATTCAGATTCTCAACTAACCTTGTTTTTACTGTGA
ATTTGCCAAGGAAATTATCCATTAGAAGCTCTGGTGAAAGCTCTGCAGGA
GCAACAGAGGTAGATTCAGAGGATTCCATTGAGCTTCCAAAAGAATCGTC
ATCTTTAATTTCTACTCTCAATGTAGAAAGAGCTCTCCGTGGTATACCAA
TAACAGACGCAGATCATTATGGTAGACTTGGATTACCAAGAGGATGTCCT
TATGACATGGTGCCAGTTGCGTATAACAACAAGGTTCAAGAATTGGAGAG
TCAAGATTTAGAGAAAGACATACTCAACAAGAAATTGGAGCTTCTCAGAG
AATCATACACCATCATGTCAACACCAGAAGAAAGAAGAATGTATGACTGG
AGTTTGGCCAGAGAAGGTAACACAGAAAAATTCATTTGGCCATATGAGGT
TGATATCCTAGGGATTGAAAAAGGAGAGCCTCCAGCACAGGAACCTGAGG
ATGTTGGACCAACCAGACTGGTTGGATACTTCCTTGTGGGATGGATAGTG
CTAGCATTTGTGTTATCAATTGGACTAAACTTATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR009518PSII_PsbX
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0016020membrane