XM_058926842.1

Transcript Overview


Name	XM_058926842.1
Unique Name	drVicVill.AUMerit.1.0.rna-XM_058926842.1
Type	mRNA
Organism	Vicia villosa (vetch)
Sequence length	447

References

External references for this mRNA


Database	Accession
GeneID	131657444
GenBank	XM_058926842.1

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
LG3	chromosome	LG3:4557332..4558021 -	Vicia villosa cv. AU Merit genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan Analysis for Vicia villosa cv. AU Merit genome v1.0	2024-08-12
Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs UniProt TrEMBL	2024-08-12
Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs UniProt Swissprot	2024-08-12
Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs arabidopsis Araport11	2024-08-12
Vicia villosa cv. AU Merit genome v1.0	2024-06-26

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
avjvvaL028	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjvvaL180	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
psvvaL494	Pisum sativum Cameor genome v1a	Pisum sativum
psvvaL545	Pisum sativum Cameor genome v1a	Pisum sativum
avjvvaL598	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
vasvvaL205	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vasvvaL258	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vrvvvaL012	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vrvvvaL182	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vrvvvaL457	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vvavvaL160	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vuvvaL082	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vumvvaL351	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vumvvaL404	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vuvvaL390	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vuvvaL801	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
Va04G060380.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
LOC131657444	drVicVill.AUMerit.1.0.gene-LOC131657444	Vicia villosa	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
exon-XM_058926842.1-2	drVicVill.AUMerit.1.0.exon-XM_058926842.1-2	Vicia villosa	exon
exon-XM_058926842.1-1	drVicVill.AUMerit.1.0.exon-XM_058926842.1-1	Vicia villosa	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
XP_058782825.1	drVicVill.AUMerit.1.0.cds-XP_058782825.1_2	Vicia villosa	CDS
XP_058782825.1	drVicVill.AUMerit.1.0.cds-XP_058782825.1	Vicia villosa	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
drVicVill.AUMerit.1.0.rna-XM_058926842.1	drVicVill.AUMerit.1.0.rna-XM_058926842.1	Vicia villosa	polypeptide
drVicVill.AUMerit.1.0.rna-XM_058926842.1	drVicVill.AUMerit.1.0.rna-XM_058926842.1-protein	Vicia villosa	polypeptide

Homology

[Close]

BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6N0W1|A0A4D6N0W1_VIGUN (AP endonuclease 2 OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g740 PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.208e-15
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 0

Query:    5 SSTNSGECTYDSYVKKFGSAEGMLRWKPKCGCGDMATLRRASTVTNYGRQFWGCRNYKGSTQPG---CGYFQWFYDDAEDEKDHFMRNQKSRLEKLEHDIDAVK 105
            S T S     ++ V++   A      +P C CG  A +R A T  N GR+FWGC NYK  ++ G   C +FQW+Y+D ++EK+  + NQ  ++E LE+ +  +K
Sbjct:    2 SRTQSSSSYCNNCVQRSVPASRTQALRPICDCGQAAVVRTARTPRNVGRKFWGCANYKRQSEGGGVSCNFFQWWYEDVDEEKEVLIVNQNMKIEDLENVVRDLK 105

[Close]

BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6M1E0|A0A4D6M1E0_VIGUN (GRF-type domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG5g2444 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.055e-15
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 0

Query:   32 PKCGCGDMATLRRASTVTNYGRQFWGCRNYKGSTQP--GCGYFQWFYDDAEDEKDHFMRNQKSRLEKLEHDIDAVKMEVECLKKKITELQ 119
            P C CG  A LR A T+ N GRQFWGC N+KG ++   GC +F+W  +D +DEKD  +  Q+ ++  LE ++   +  +  L  ++ E++
Sbjct:   36 PTCNCGVAAVLRTARTIKNGGRQFWGCPNFKGGSEGCYGCNFFKWCIEDGDDEKDAIILRQRRKIYILEKEVKGWRKWISSLTSQVNEMK 125

[Close]

BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6NG42|A0A4D6NG42_VIGUN (GRF-type domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g3150 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.230e-15
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 0

Query:   31 KPKCGCGDMATLRRASTVTNYGRQFWGCRNYKGSTQPG---CGYFQWFYDDAEDEKDHFMRNQKSRLEKLEHDIDAVKMEVECL 111
            +P C CG+ A LR   T  N GR+FWGC NYK  ++ G   C +F+W+Y+D ++EK+  + NQ  ++E LE+ + A+K  V C+
Sbjct:   28 RPICDCGEAAVLRTTRTPRNVGRKFWGCANYK--SEGGGVCCNFFKWWYEDVDEEKEVIIVNQNMKIEDLENVVRALKKMVYCI 109

[Close]

BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6NC72|A0A4D6NC72_VIGUN (GRF-type domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g1732 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.117e-14
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 0

Query:   32 PKCGCGDMATLRRASTVTNYGRQFWGCRNYKGSTQP--GCGYFQWFYDDAEDEKDHFMRNQKSRLEKLEHDIDAVKMEVECL 111
            P C CG++A LR A T  N G+QFWGC NYK  ++   GC YF+W  +DA DE+D+ +  Q+ ++  LE ++   +M V  L
Sbjct:   36 PICNCGEVAVLRTARTTKNGGKQFWGCPNYKRGSEAFIGCNYFKWCSEDAVDERDNTIIRQRRKIFILEKELKGSRMFVNVL 117

[Close]

BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6M6T7|A0A4D6M6T7_VIGUN (GRF-type domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g1732 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.782e-14
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0

Query:    8 NSGECTYDSYVKK-------FGSAEGMLRWKPKCGCGDMATLRRASTVTNYGRQFWGCRNYKGSTQP--GCGYFQWFYDDAEDEKDHFMRNQKSRLEKLEHDI 101
            +S  CT++S V +        G   G+    P C CG  A LR A T+ N GRQFWGC N+KG ++   GC +F+W  +D +DEKD  +  Q+ ++  LE ++
Sbjct:    6 SSSSCTHNSRVMRNQSSCCSSGGCRGLGE-APTCNCGVAAVLRTARTIKNGGRQFWGCPNFKGGSEGCYGCNFFKWCIEDGDDEKDAIILRQRRKIYILEKEV 107

[Close]

BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6N215|A0A4D6N215_VIGUN (GRF-type domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g1905 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.796e-14
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 0

Query:   31 KPKCGCGDMATLRRASTVTNYGRQFWGCRNYKGSTQPG---CGYFQWFYDDAEDEKDHFMRNQKSRLEKLEHDIDAVK 105
            +P C CG+ A LR A T  N GR+ WGC NYK  ++ G   C +F+W+Y+D ++EK+  + NQ  ++E LE+ +  +K
Sbjct:   28 RPICDCGEAAVLRTARTPRNVGRKLWGCANYKRQSEGGGVCCNFFKWWYEDVDEEKEVVIVNQNMKIEDLENVVRDLK 105

[Close]

BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6N349|A0A4D6N349_VIGUN (GRF-type domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g1548 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.310e-14
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 0

Query:   31 KPKCGCGDMATLRRASTVTNYGRQFWGCRNYKGSTQPG---CGYFQWFYDDAEDEKDHFMRNQKSRLEKLEHDIDAVK 105
            +P C CG+ A LR A T  N GR+FWGC NYK  ++ G   C +F+W+Y+D ++EK+  + NQ  ++E LE+ +  +K
Sbjct:   28 RPICDCGEAAVLRIARTPRNVGRKFWGCTNYK--SEGGGVCCNFFKWWYEDVDEEKEVIIVNQNMKIEDLENVVRVLK 103

[Close]

BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6M1L0|A0A4D6M1L0_VIGUN (GRF-type domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG5g2144 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.242e-14
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 0

Query:   31 KPKCGCGDMATLRRASTVTNYGRQFWGCRNYKGSTQPG---CGYFQWFYDDAEDEKDHFMRNQKSRLEKLEHDIDAVK 105
            +P C CG  A LR   T  N GR FWGC NYK  ++ G   C +F+W+Y+D ++EK+  + NQ  ++E LE+ +  +K
Sbjct:   28 RPICDCGQAAVLRTTRTPRNVGRNFWGCANYKRQSEGGGVCCNFFKWWYEDVDEEKEVIIVNQNMKIEDLENVVRDLK 105

[Close]

BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6NQ75|A0A4D6NQ75_VIGUN (GRF-type domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g3006 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.597e-14
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 0

Query:   32 PKCGCGDMATLRRASTVTNYGRQFWGCRNYKGS----TQPGCGYFQWFYDDAEDEKDHFMRNQKSRLEKLEHDIDAVKMEVECL 111
            P C CG++A LR A TV N+G+QF GC NYK S       GC YF+WF +D  DE+D  +R Q+ ++  LE  +   K  +  L
Sbjct:   65 PMCYCGEVAALRVAKTVKNFGKQFLGCPNYKRSGANEESKGCNYFKWFNEDNGDERDATIRRQRRKIYALEKSVMVSKKRIRFL 148

[Close]

BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6NG30|A0A4D6NG30_VIGUN (GRF-type domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g2742 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.152e-14
Identity = 35/86 (40.70%), Postives = 48/86 (55.81%), Query Frame = 0

Query:   18 VKKFGSAEGMLRWKPKCGCGDMATLRRASTVTNYGRQFWGCRNYK--GSTQPGCGYFQWFYDDAEDEKDHFMRNQKSRLEKLEHDI 101
            V   G+  G +   P C CG++A LR A T  N G+QFWGC +YK  G     C YF+W  +D  DE+D  +  Q  R+ +LE D+
Sbjct:   21 VSSPGTVSGSMSGTPHCHCGEIAVLRVARTAKNCGKQFWGCPHYKSVGEDFKACNYFKWCTEDNGDERDATIARQSQRIRQLEKDL 106

The following BLAST results are available for this feature:

BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)

BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-12 (Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A4D6N0W1\|A0A4D6N0W1_VIGUN	1.208e-15	36.54	AP endonuclease 2 OS=Vigna unguiculata OX=3917 GN=...	[more]
tr\|A0A4D6M1E0\|A0A4D6M1E0_VIGUN	5.055e-15	37.78	GRF-type domain-containing protein OS=Vigna unguic...	[more]
tr\|A0A4D6NG42\|A0A4D6NG42_VIGUN	6.230e-15	41.67	GRF-type domain-containing protein OS=Vigna unguic...	[more]
tr\|A0A4D6NC72\|A0A4D6NC72_VIGUN	1.117e-14	42.68	GRF-type domain-containing protein OS=Vigna unguic...	[more]
tr\|A0A4D6M6T7\|A0A4D6M6T7_VIGUN	1.782e-14	37.86	GRF-type domain-containing protein OS=Vigna unguic...	[more]
tr\|A0A4D6N215\|A0A4D6N215_VIGUN	1.796e-14	41.03	GRF-type domain-containing protein OS=Vigna unguic...	[more]
tr\|A0A4D6N349\|A0A4D6N349_VIGUN	2.310e-14	42.31	GRF-type domain-containing protein OS=Vigna unguic...	[more]
tr\|A0A4D6M1L0\|A0A4D6M1L0_VIGUN	3.242e-14	41.03	GRF-type domain-containing protein OS=Vigna unguic...	[more]
tr\|A0A4D6NQ75\|A0A4D6NQ75_VIGUN	4.597e-14	42.86	GRF-type domain-containing protein OS=Vigna unguic...	[more]
tr\|A0A4D6NG30\|A0A4D6NG30_VIGUN	5.152e-14	40.70	GRF-type domain-containing protein OS=Vigna unguic...	[more]

BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-12 (Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs UniProt Swissprot)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of XM_058926842.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-12 (Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs arabidopsis Araport11)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan Analysis for Vicia villosa cv. AU Merit genome v1.0
Date Performed: 2024-08-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010666	Zinc finger, GRF-type	PFAM	PF06839	zf-GRF	coord: 32..74 e-value: 0.0035 score: 28.7
IPR010666	Zinc finger, GRF-type	PROSITE	PS51999	ZF_GRF	coord: 34..78 score: 10.873466
None	No IPR available	PANTHER	PTHR33248	ZINC ION-BINDING PROTEIN	coord: 3..127

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at LG3:4557332..4558021-
coding sequence from alignment at LG3:4557332..4558021-

mRNA sequence

>drVicVill.AUMerit.1.0.rna-XM_058926842.1 ID=drVicVill.AUMerit.1.0.rna-XM_058926842.1; Name=XM_058926842.1; organism=Vicia villosa; type=mRNA; length=447bp
ATGAAGTCTTCTTCCTCAACGAATTCTGGAGAATGTACATACGATTCTTA
TGTGAAGAAATTTGGGAGTGCAGAAGGGATGTTGCGATGGAAACCTAAAT
GTGGCTGTGGAGACATGGCTACTCTACGAAGAGCTTCAACTGTCACGAAC
TATGGGCGACAATTTTGGGGTTGTCGTAATTATAAGGGTTCAACACAACC
TGGATGTGGCTACTTTCAATGGTTCTATGATGATGCTGAGGATGAAAAAG
ATCACTTTATGAGGAATCAAAAGAGTAGGTTGGAGAAGCTTGAACATGAT
ATTGATGCTGTAAAAATGGAGGTCGAGTGTTTAAAGAAGAAGATTACAGA
ATTGCAGAATCAATCGAAGAAGAGCATGAAGATAGAAAAAATTTGGAGGA
GTCTGTTTTGTTTACTTTTAGTTGTTGTTGTTGTTAGGATGTTGTAA

protein sequence of drVicVill.AUMerit.1.0.rna-XM_058926842.1

>drVicVill.AUMerit.1.0.rna-XM_058926842.1 ID=drVicVill.AUMerit.1.0.rna-XM_058926842.1; Name=drVicVill.AUMerit.1.0.rna-XM_058926842.1; organism=Vicia villosa; type=polypeptide; length=148bp
MKSSSSTNSGECTYDSYVKKFGSAEGMLRWKPKCGCGDMATLRRASTVTN
YGRQFWGCRNYKGSTQPGCGYFQWFYDDAEDEKDHFMRNQKSRLEKLEHD
IDAVKMEVECLKKKITELQNQSKKSMKIEKIWRSLFCLLLVVVVVRML

mRNA from alignment at LG3:4557332..4558021-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>drVicVill.AUMerit.1.0.rna-XM_058926842.1 ID=drVicVill.AUMerit.1.0.rna-XM_058926842.1; Name=XM_058926842.1; organism=Vicia villosa; type=mRNA; length=690bp; location=Sequence derived from: LG3:4557332..4558021- (Vicia villosa
ATGAGCAAAGTACAATGCCGGAAATATAGGAAACTTGGGCATTTTGTAGC
AAAATGTAGTGCTAAAGAGTGGGAATCTAAAGAGGATGAAGCCAAGGTTA
CAAGGAAAGAGGTAGATGATGAAGCTACATTCTTAATGATGATTTCCAAG
GAGTTTAGTGGCAATTTAGAGGTGCTTGACAGTAGTTGCAAGTCACGGGA
CAACAACTGCAGTAGTGCAGAAAATGGGGCAGATTTGCGCTCAAAATAAA
ATGTGATGATTTCGGTTCGAGATGGAACCCAAGGCAGCGATGAATGGTAC
TTGGACTCCAGTTGTTCGATGCATATGACAGGGAGAAAAGATTTGTTTGT
GCAAATCAATCAAGTGGTGAAAAATAAAGTGAAGTTTGCAGTTGATTCAA
CTCTTACGGTCGAAGGTGTCAGTGATGTTTTAATCGAGAAGAAGAATGGT
GGATATTATATGATCAAAGATGTGTTATATATTCCATGTATTAAATGTAA
TCTTTTGAGTATTAGACAATTGCTTGAGAAAGGTTACAACATACGTTTGA
AAAATAAGATCTTACGTGTTGTTGATGCTAGTGGTGTGTTGATCCTTAAA
GCTCCTATGGCTTCCAATAGGACATTCAAAGTTGAGTTGAAAGTATTGGA
GCATAGGTGCTTAGATAAAGCTGCAAGTAGAGAGGAATAG

Coding sequence (CDS) from alignment at LG3:4557332..4558021-

>drVicVill.AUMerit.1.0.rna-XM_058926842.1 ID=drVicVill.AUMerit.1.0.rna-XM_058926842.1; Name=XM_058926842.1; organism=Vicia villosa; type=CDS; length=570bp; location=Sequence derived from: LG3:4557332..4558021- (Vicia villosa
ATGAGCAAAGTACAATGCCGGAAATATAGGAAACTTGGGCATTTTGTAGC
AAAATGTAGTGCTAAAGAGTGGGAATCTAAAGAGGATGAAGCCAAGGTTA
CAAGGAAAGAGGTAGATGATGAAGCTACATTCTTAATGATGATTTCCAAG
GAGTTTAGTGGCAATTTAGAGGTGCTTGACAGTAGTTGCAAGTCACGGGA
CAACAACTGCAGGAGAAAAGATTTGTTTGTGCAAATCAATCAAGTGGTGA
AAAATAAAGTGAAGTTTGCAGTTGATTCAACTCTTACGGTCGAAGGTGTC
AGTGATGTTTTAATCGAGAAGAAGAATGGTGGATATTATATGATCAAAGA
TGTGTTATATATTCCATGTATTAAATGTAATCTTTTGAGTATTAGACAAT
TGCTTGAGAAAGGTTACAACATACGTTTGAAAAATAAGATCTTACGTGTT
GTTGATGCTAGTGGTGTGTTGATCCTTAAAGCTCCTATGGCTTCCAATAG
GACATTCAAAGTTGAGTTGAAAGTATTGGAGCATAGGTGCTTAGATAAAG
CTGCAAGTAGAGAGGAATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010666	Znf_GRF

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Search form