evm.model.Chr09.2462
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of evm.model.Chr09.2462 vs. UniProtKB/Swiss-Prot
Match: sp|Q8W4M7|ERCC2_ARATH (General transcription and DNA repair factor IIH helicase subunit XPD OS=Arabidopsis thaliana OX=3702 GN=XPD PE=1 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.139e-68 Identity = 121/279 (43.37%), Postives = 176/279 (63.08%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQ--VDRPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLERY 277 M I++V VYFP+ I+PEQ YM LK LD K H +L+MP GK+ AL+S ITSYRL +P++ +KL+YC R + E E L ELK ++ Q LG A +LA+G ++R N LC+N+ + D VD+ C TASW+R L+ N N+ +C +FE Y+ + +LPPGVYT+EDL G++ +CPYF+A ++ ANV+V Y YLL+PK AG IS +L ES+VV D+A +I VC +LSV+V TL + + ++R +++R+ Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYRLSRPDS-PIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKN-LCVNTKVLAAENRDS-VDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDLRAFGKNR--GWCPYFLARHMIQFANVIVY-SYQYLLDPKVAGFISKELQKESVVVFDEAHNIDNVCIEALSVSVRRVTLEGANRNLNKIRQEIDRF 273
BLAST of evm.model.Chr09.2462 vs. UniProtKB/Swiss-Prot
Match: sp|P18074|ERCC2_HUMAN (General transcription and DNA repair factor IIH helicase subunit XPD OS=Homo sapiens OX=9606 GN=ERCC2 PE=1 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 7.999e-51 Identity = 100/262 (38.17%), Postives = 157/262 (59.92%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQV-DRPV-LPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTL 260 MK+ +D + VYFP+ I+PEQ YM LK LD K HG+L+MP GK+ +L++ I +Y+ P + KLIYC+R + E E ++ EL+ + G+ L + ++R N LCI+ +T + VD KC TAS++R H+T++ C ++E++ R V LP G+Y ++DL LG + +CPYF+A ++ ANVVV Y+YLL+PK A ++S +L +++VV D+A +I VC S+SV ++ TL Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEV-TKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKN-LCIHPEVTPLRFGKD-VDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALG--RRQGWCPYFLARYSILHANVVVY-SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTL 256
BLAST of evm.model.Chr09.2462 vs. UniProtKB/Swiss-Prot
Match: sp|O08811|ERCC2_MOUSE (General transcription and DNA repair factor IIH helicase subunit XPD OS=Mus musculus OX=10090 GN=Ercc2 PE=1 SV=2) HSP 1 Score: 177.178 bits (448), Expect = 3.276e-49 Identity = 96/262 (36.64%), Postives = 156/262 (59.54%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQVD--RPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTL 260 MK+ +D + VYFP+ I+PEQ YM LK LD K HG+L+MP GK+ +L++ I +Y+ P + KLIYC+R + E E ++ EL+ + G+ L + ++R N LCI+ +T + VD KC TAS++R + ++ C ++E++ + + LP G+Y ++DL LG ++ +CPYF+A ++ ANVVV Y+YLL+PK A ++S +L +++VV D+A +I VC S+SV ++ TL Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQRAYPLEV-TKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKN-LCIHPEVTPLRFGKD-VDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDLKALG--QRQGWCPYFLARYSILHANVVVY-SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTL 256
BLAST of evm.model.Chr09.2462 vs. UniProtKB/Swiss-Prot
Match: sp|Q60452|ERCC2_CRIGR (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cricetulus griseus OX=10029 GN=ERCC2 PE=1 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 4.744e-49 Identity = 98/262 (37.40%), Postives = 156/262 (59.54%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQV-DRPV-LPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTL 260 MK+ +D + VYFP+ I+PEQ YM LK LD K HG+L+MP GK+ +L++ I +Y+ P + KLIYC+R + E E ++ EL+ + G+ L + ++R N LCI+ +T + VD KC TAS++R + ++ C ++E++ R V LP G+Y ++DL LG ++ +CPYF+A ++ ANVVV Y+YLL+PK A ++S +L +++VV D+A +I VC S+SV ++ TL Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQRAFPLEV-TKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKN-LCIHPEVTPLRFGKD-VDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDAHGRQVPLPAGIYNLDDLKALG--QRQGWCPYFLARYSILHANVVVY-SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTL 256
BLAST of evm.model.Chr09.2462 vs. UniProtKB/Swiss-Prot
Match: sp|A6QLJ0|ERCC2_BOVIN (General transcription and DNA repair factor IIH helicase subunit XPD OS=Bos taurus OX=9913 GN=ERCC2 PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 8.649e-49 Identity = 98/262 (37.40%), Postives = 157/262 (59.92%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQV-DRPV-LPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTL 260 MK+ +D + VYFP+ I+PEQ YM LK LD K HG+L+MP GK+ +L++ I +Y+ P + KLIYC+R + E E ++ EL+ + G+ L + ++R N LCI+ +T + VD KC TAS++R ++++ C ++E++ V R V LP G+Y ++DL +G + +CPYF+A ++ ANVVV Y+YLL+PK A ++S +L +++VV D+A +I VC S+SV ++ TL Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEV-TKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKN-LCIHPEVTPLRFGKD-VDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDLKAVG--RRQGWCPYFLARYSILHANVVVY-SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTL 256
BLAST of evm.model.Chr09.2462 vs. UniProtKB/Swiss-Prot
Match: sp|Q55G81|ERCC2_DICDI (General transcription and DNA repair factor IIH helicase subunit XPD OS=Dictyostelium discoideum OX=44689 GN=repD PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 1.729e-44 Identity = 101/277 (36.46%), Postives = 155/277 (55.96%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLG-DAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQVD-RPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLE 275 MK I+++ VYFP+ I+PEQ YM LK LD IL+MP GK+ +L+S I+SY++ P +KLIYC+R + E E E + + Q + +G ++ L + ++R N LCI ++E + VD+ C T+SW RE C +FE ++ + + +L GVY++EDL E G Q CPYF++ L AN+V+ Y YLL+PK A +ISS SIVV D+A +I VC +LS+ + L ++S + ++ Q+E Sbjct: 1 MKFYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNGGPCILEMPSGTGKTVSLLSLISSYQVKNPS---IKLIYCSRTVPEIEQATEEARRVLQYRNSEMGEESPKTLCMSMSSRRN-LCIQPRVSE-ERDGKVVDALCRELTSSWNRESPTSEK----CKFFENFESNGKEILLEGVYSLEDLKEYGLKHQ--MCPYFLSRHMLNFANIVIF-SYQYLLDPKIASLISSSFPSNSIVVFDEAHNIDNVCINALSINIDNKLLDTSSKNIAKINKQIE 265
BLAST of evm.model.Chr09.2462 vs. UniProtKB/Swiss-Prot
Match: sp|P26659|RAD15_SCHPO (General transcription and DNA repair factor IIH helicase subunit XPD OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rad15 PE=1 SV=2) HSP 1 Score: 161.384 bits (407), Expect = 1.412e-43 Identity = 96/266 (36.09%), Postives = 150/266 (56.39%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQVDRP--VLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTS 264 MK ID++P+ FP+P I+PEQ +YM LK LD +L+MP GK+ +L+S I SY+ PE+ KLIYC+R + E + L+ELK + + LG L +G +R N LC++ ++ + VD++C TA ++RE L ++ C + + + P ++ GV+T++D+ E G E+ CPYF L N V+I Y+YLL+PK A +S +L + IVV D+A +I VC SLS+ ++ +L S Sbjct: 1 MKFYIDDLPILFPYPRIYPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIVSYQQHYPEH--RKLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKN-LCLHPSVRR-EKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLDDITEYG--EKTTRCPYFTVRRMLPFCN-VIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNIDNVCIESLSIDLTESSLRKAS 259
BLAST of evm.model.Chr09.2462 vs. UniProtKB/Swiss-Prot
Match: sp|P06839|RAD3_YEAST (General transcription and DNA repair factor IIH helicase subunit XPD OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RAD3 PE=1 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 3.447e-38 Identity = 90/264 (34.09%), Postives = 145/264 (54.92%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHN--TNINICSYFEK-YQVD-RPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTL 260 MK ID++PV FP+P+I+PEQ YM +K LD + IL+MP GK+ +L+S +Y++ PE+ K+IYC+R + E E L EL+ + + LG + +G +R N LC++ +++ VD KC T + + N+ +C Y E Y ++ LP GV++ E L L E+ CPYF+ + N ++I Y+YLL+PK A +S+++ +SIV+ D+A +I VC SLS+ ++ L Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQMHYPEH--RKIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKN-LCLHPEVSK-ERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFEKL--LKYCEEKTLCPYFIVRRMISLCN-IIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHNIDNVCIESLSLDLTTDAL 257
BLAST of evm.model.Chr09.2462 vs. Araport11
Match: AT1G03190.2 (| RAD3-like DNA-binding helicase protein | Chr1:775822-779863 FORWARD LENGTH=758 | 201606) HSP 1 Score: 229.18 bits (583), Expect = 2.189e-69 Identity = 121/279 (43.37%), Postives = 176/279 (63.08%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQ--VDRPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLERY 277 M I++V VYFP+ I+PEQ YM LK LD K H +L+MP GK+ AL+S ITSYRL +P++ +KL+YC R + E E L ELK ++ Q LG A +LA+G ++R N LC+N+ + D VD+ C TASW+R L+ N N+ +C +FE Y+ + +LPPGVYT+EDL G++ +CPYF+A ++ ANV+V Y YLL+PK AG IS +L ES+VV D+A +I VC +LSV+V TL + + ++R +++R+ Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYRLSRPDS-PIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKN-LCVNTKVLAAENRDS-VDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDLRAFGKNR--GWCPYFLARHMIQFANVIVY-SYQYLLDPKVAGFISKELQKESVVVFDEAHNIDNVCIEALSVSVRRVTLEGANRNLNKIRQEIDRF 273
BLAST of evm.model.Chr09.2462 vs. Araport11
Match: AT1G03190.1 (| RAD3-like DNA-binding helicase protein | Chr1:775822-779863 FORWARD LENGTH=758 | 201606) HSP 1 Score: 229.18 bits (583), Expect = 2.189e-69 Identity = 121/279 (43.37%), Postives = 176/279 (63.08%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQ--VDRPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLERY 277 M I++V VYFP+ I+PEQ YM LK LD K H +L+MP GK+ AL+S ITSYRL +P++ +KL+YC R + E E L ELK ++ Q LG A +LA+G ++R N LC+N+ + D VD+ C TASW+R L+ N N+ +C +FE Y+ + +LPPGVYT+EDL G++ +CPYF+A ++ ANV+V Y YLL+PK AG IS +L ES+VV D+A +I VC +LSV+V TL + + ++R +++R+ Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYRLSRPDS-PIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKN-LCVNTKVLAAENRDS-VDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDLRAFGKNR--GWCPYFLARHMIQFANVIVY-SYQYLLDPKVAGFISKELQKESVVVFDEAHNIDNVCIEALSVSVRRVTLEGANRNLNKIRQEIDRF 273
BLAST of evm.model.Chr09.2462 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6NRT0|A0A4D6NRT0_VIGUN (DNA excision repair protein ERCC-2 OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2198 PE=4 SV=1) HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0 Identity = 275/277 (99.28%), Postives = 276/277 (99.64%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQVDRPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLERY 277 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQVDRPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLE + Sbjct: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQVDRPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLESF 277
BLAST of evm.model.Chr09.2462 vs. UniProtKB/TrEMBL
Match: tr|A0A438F4C0|A0A438F4C0_VITVI (DNA helicase OS=Vitis vinifera OX=29760 GN=XPD_2 PE=4 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 4.702e-75 Identity = 129/278 (46.40%), Postives = 174/278 (62.59%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQ--VDRPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLER 276 MK I++V VYFP+ I+PEQ YM LK LD K H +L+MP GK+ AL+S ITSY L KP N +KL+YC R + E E L+EL+ ++Q Q LG AA +LA+G ++R N LCIN + D VD+ C TASW+R LA+ N NI C +FE Y+ VLPPGVYT++DL G D+ +CPYF+A ++ ANVVV Y YLL+PK AGIIS ++ ES+VV D+A +I VC +LSV+V TL + + +M ++ R Sbjct: 1 MKFQIEDVTVYFPYDNIYPEQYSYMVELKRALDAKGHALLEMPTGTGKTIALLSLITSYALSKPSN-PIKLLYCTRTVHEMEKTLAELRLLHQYQLRHLGPAARILALGLSSRKN-LCINPAVVSAENRDS-VDAGCRKLTASWVRALAVENPNIPTCQFFENYEKAASEAVLPPGVYTLQDLRAFGRDK--GWCPYFLARHMVQFANVVVY-SYQYLLDPKVAGIISKEMQRESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSKMAQEINR 272
BLAST of evm.model.Chr09.2462 vs. UniProtKB/TrEMBL
Match: tr|A0A067FRJ6|A0A067FRJ6_CITSI (DNA helicase OS=Citrus sinensis OX=2711 GN=CISIN_1g004358mg PE=4 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 1.567e-71 Identity = 130/279 (46.59%), Postives = 174/279 (62.37%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQ--VDRPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLERY 277 M +++V VYFP+ I+PEQ YM LK LD K H +L+MP GK+ AL+S ITSY L KPEN +KLIYC R + E E L+ELK ++ Q LG AA +LAIG ++R N LC+NS + D VD+ C TASW+R LA N NI C +FE Y+ VLPPGVYT++DL G +Q +CPYF+A ++ ANVVV Y YLL+PK AGIIS ++ ES+VV D+A +I VC +LSV+V TL + + + ++ER+ Sbjct: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPEN-PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKN-LCVNSRVLAAENRDS-VDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFG--KQQGWCPYFLARHMVQFANVVVY-SYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERF 273
BLAST of evm.model.Chr09.2462 vs. UniProtKB/TrEMBL
Match: tr|A0A2P2LDS3|A0A2P2LDS3_RHIMU (General transcription and DNA repair factor IIH helicase subunit XPD OS=Rhizophora mucronata OX=61149 PE=3 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 1.066e-70 Identity = 131/279 (46.95%), Postives = 178/279 (63.80%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQ--VDRPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLERY 277 MKV I++V VYFP+ I+PEQ YM LK LD K H +L+MP GK+ AL+S ITSY L KP++ +KLIYC R + E E L+ELK ++ Q LG AA +LAIG ++R N LCIN + D VD+ C TASW+R A N+N+ C +FE Y+ +LPPGVYT++DL E G +QN +CPYF++ ++ ANVVV Y YLL+PK AGIIS ++ ES+VV D+A +I VC +LSV+V TL S + M+ ++ER+ Sbjct: 1 MKVQIEDVTVYFPYDNIYPEQYAYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYTLSKPQS-PVKLIYCTRTVHEMEKTLAELKLLHNYQVKNLGLAARILAIGLSSRKN-LCINQRVLAAENRDS-VDAACRKLTASWVRSKAAENSNVRTCEFFENYERAASGALLPPGVYTLQDLREFG--KQNGWCPYFLSRHMVQFANVVVY-NYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLDGASRNLTRMQQEIERF 273
BLAST of evm.model.Chr09.2462 vs. UniProtKB/TrEMBL
Match: tr|A0A2P2LDS2|A0A2P2LDS2_RHIMU (General transcription and DNA repair factor IIH helicase subunit XPD OS=Rhizophora mucronata OX=61149 PE=3 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 1.227e-70 Identity = 131/279 (46.95%), Postives = 178/279 (63.80%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQ--VDRPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLERY 277 MKV I++V VYFP+ I+PEQ YM LK LD K H +L+MP GK+ AL+S ITSY L KP++ +KLIYC R + E E L+ELK ++ Q LG AA +LAIG ++R N LCIN + D VD+ C TASW+R A N+N+ C +FE Y+ +LPPGVYT++DL E G +QN +CPYF++ ++ ANVVV Y YLL+PK AGIIS ++ ES+VV D+A +I VC +LSV+V TL S + M+ ++ER+ Sbjct: 1 MKVQIEDVTVYFPYDNIYPEQYAYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYTLSKPQS-PVKLIYCTRTVHEMEKTLAELKLLHNYQVKNLGLAARILAIGLSSRKN-LCINQRVLAAENRDS-VDAACRKLTASWVRSKAAENSNVRTCEFFENYERAASGALLPPGVYTLQDLREFG--KQNGWCPYFLSRHMVQFANVVVY-NYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLDGASRNLTRMQQEIERF 273
BLAST of evm.model.Chr09.2462 vs. UniProtKB/TrEMBL
Match: tr|A0A166HCF6|A0A166HCF6_DAUCS (General transcription and DNA repair factor IIH helicase subunit XPD OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002738 PE=4 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 1.932e-70 Identity = 130/279 (46.59%), Postives = 181/279 (64.87%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQVDRP---VLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLER 276 MK I++V VYFP+ I+PEQ YM LK LD + H +L+MP GK+ AL+S ITSY L KP N +KLIYC R + E E L+ELK +Y+ Q LG AA MLAIG ++R N LC+N + + D VD+ C TASW+R+LA+ N N+ +CS+FE Y DR +LP GVYT++DL LG+++ +CPYF+A ++ +NVVV Y YLL+PK AGIIS ++ ES+VV D+A +I VC +LSV+V TL + + +M +++R Sbjct: 1 MKFQIEDVTVYFPYDHIYPEQYAYMLELKRSLDARGHSLLEMPTGTGKTIALLSLITSYSLSKPSN-PVKLIYCTRTVHEMEKTLAELKLLYKYQVECLGKAARMLAIGLSSRKN-LCVNDRVLKAENRDS-VDAGCRKLTASWVRDLAVQNKNVELCSFFEDY--DRAGDVLLPAGVYTLQDLRLLGKEK--GWCPYFLARHMVKYSNVVVY-SYQYLLDPKVAGIISKEMEKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSKMSQEIDR 271
BLAST of evm.model.Chr09.2462 vs. UniProtKB/TrEMBL
Match: tr|A0A6P6V4T7|A0A6P6V4T7_COFAR (General transcription and DNA repair factor IIH helicase subunit XPD OS=Coffea arabica OX=13443 GN=LOC113716709 PE=3 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 2.248e-70 Identity = 131/279 (46.95%), Postives = 174/279 (62.37%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQ--VDRPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLERY 277 MK I++V VYFP+ I+PEQ YM LK LD K H +L+MP GK+ AL+S ITSY L KP N +K IYC R + E E LSELK ++ Q LG AA +LA+G ++R N LCIN T+ D VD+ C TASW+RELA N I CS+FE Y+ +LPPGVYT++DL G + +CPYF+A ++ ANVVV Y YLL+PK AGIIS ++ ES+VV D+A +I VC +LSV+V M TL + + M +++R+ Sbjct: 1 MKFQIEDVTVYFPYDNIYPEQYAYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYALSKPSN-PIKFIYCTRTVHEMEKTLSELKLLHNYQLQHLGPAAKILALGLSSRKN-LCINPTVVSAENRDS-VDAACRKLTASWVRELAAENPRIPTCSFFENYEKSASEAILPPGVYTLQDLRAYG--KLKGWCPYFLARHMVQLANVVVY-SYQYLLDPKVAGIISKEMQRESVVVFDEAHNIDNVCIEALSVSVRMQTLEGATRNINRMSQEIDRF 273
BLAST of evm.model.Chr09.2462 vs. UniProtKB/TrEMBL
Match: tr|A0A4V3WNI6|A0A4V3WNI6_CAMSI (General transcription and DNA repair factor IIH helicase subunit XPD OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_026854 PE=3 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 3.126e-70 Identity = 128/279 (45.88%), Postives = 181/279 (64.87%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQ--VDRPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLERY 277 MK I++V VYFP+ I+PEQ YM LK LD K H +L+MP GK+ AL+S ITSY L KP N +KL+YC R + E E L+EL+ +++ Q LG +A +LA+G ++R N LCIN ++ + + + VD+ C TASW+R LA+ N NI CS+FE Y+ VLPPGVYT++DL G+++ +CPYF+A ++ ANVVV Y YLL+PK AGIIS ++ ES+VV D+A +I VC +LSV+V TL + + +M ++ERY Sbjct: 1 MKFQIEDVTVYFPYDHIYPEQYSYMVELKRSLDAKGHCLLEMPTGTGKTIALLSLITSYSLSKPSN-PVKLLYCTRTVHEMEKTLAELRFLHRYQLQHLGPSARILALGLSSRKN-LCINPSVVSAAENRDSVDAACRKLTASWVRSLAVENPNIPTCSFFEDYEKAASNAVLPPGVYTLQDLRAFGKEK--GWCPYFLARHMVQFANVVVY-SYQYLLDPKVAGIISKEMQRESVVVFDEAHNIDNVCIEALSVSVRSQTLEGATRNLNKMSHEIERY 274
BLAST of evm.model.Chr09.2462 vs. UniProtKB/TrEMBL
Match: tr|A0A2P2LDT9|A0A2P2LDT9_RHIMU (General transcription and DNA repair factor IIH helicase subunit XPD OS=Rhizophora mucronata OX=61149 PE=3 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 3.465e-70 Identity = 131/279 (46.95%), Postives = 178/279 (63.80%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQ--VDRPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLERY 277 MKV I++V VYFP+ I+PEQ YM LK LD K H +L+MP GK+ AL+S ITSY L KP++ +KLIYC R + E E L+ELK ++ Q LG AA +LAIG ++R N LCIN + D VD+ C TASW+R A N+N+ C +FE Y+ +LPPGVYT++DL E G +QN +CPYF++ ++ ANVVV Y YLL+PK AGIIS ++ ES+VV D+A +I VC +LSV+V TL S + M+ ++ER+ Sbjct: 1 MKVQIEDVTVYFPYDNIYPEQYAYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYTLSKPQS-PVKLIYCTRTVHEMEKTLAELKLLHNYQVKNLGLAARILAIGLSSRKN-LCINQRVLAAENRDS-VDAACRKLTASWVRSKAAENSNVRTCEFFENYERAASGALLPPGVYTLQDLREFG--KQNGWCPYFLSRHMVQFANVVVY-NYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLDGASRNLTRMQQEIERF 273
BLAST of evm.model.Chr09.2462 vs. UniProtKB/TrEMBL
Match: tr|F6HQ82|F6HQ82_VITVI (General transcription and DNA repair factor IIH helicase subunit XPD OS=Vitis vinifera OX=29760 GN=VIT_07s0104g00060 PE=3 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 3.671e-70 Identity = 129/279 (46.24%), Postives = 175/279 (62.72%), Query Frame = 0 Query: 1 MKVTIDEVPVYFPHPEIHPEQLRYMHYLKTVLDRKSHGILQMPKNKGKSSALISFITSYRLWKPENLQMKLIYCARNLEETENILSELKTIYQLQRHFLGDAANMLAIGFATRMNKLCINSTITEFSISDEFVDSKCLGCTASWIRELALHNTNINICSYFEKYQ--VDRPVLPPGVYTIEDLHELGEDEQNDFCPYFVAIDALRTANVVVICGYNYLLNPKYAGIISSKLMDESIVVLDDAEDILEVCKTSLSVAVSMHTLTSTSLFVKEMRLQLERY 277 MK I++V VYFP+ I+PEQ YM LK LD K H +L+MP GK+ AL+S ITSY L KP N +KL+YC R + E E L+EL+ ++Q Q LG AA +LA+G ++R N LCIN + D VD+ C TASW+R LA+ N NI C +FE Y+ VLPPGVYT++DL G D+ +CPYF+A ++ ANVVV Y YLL+PK AGIIS ++ ES+VV D+A +I VC +LSV+V TL + + +M ++ R+ Sbjct: 1 MKFQIEDVTVYFPYDNIYPEQYSYMVELKRALDAKGHALLEMPTGTGKTIALLSLITSYALSKPSN-PIKLLYCTRTVHEMEKTLAELRLLHQYQLRHLGPAARILALGLSSRKN-LCINPAVVSAENRDS-VDAGCRKLTASWVRALAVENPNIPTCQFFENYEKAASEAVLPPGVYTLQDLRAFGRDK--GWCPYFLARHMVQFANVVVY-SYQYLLDPKVAGIISKEMQRESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSKMAQEINRF 273 The following BLAST results are available for this feature:
BLAST of evm.model.Chr09.2462 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs UniProt Swissprot) Total hits: 8
BLAST of evm.model.Chr09.2462 vs. Araport11
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs arabidopsis Araport11) Total hits: 2
BLAST of evm.model.Chr09.2462 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0
Date Performed: 2023-06-13
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.Chr09.2462_hau_v1 ID=evm.model.Chr09.2462_hau_v1; Name=evm.model.Chr09.2462; organism=Vigna unguiculata subsp. sesquipedalis; type=mRNA; length=867bpback to top protein sequence of evm.model.Chr09.2462_hau_v1 >evm.model.Chr09.2462_hau_v1 ID=evm.model.Chr09.2462_hau_v1; Name=evm.model.Chr09.2462_hau_v1; organism=Vigna unguiculata subsp. sesquipedalis; type=polypeptide; length=288bpback to top mRNA from alignment at Chr09:35714696..35715650- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>evm.model.Chr09.2462_hau_v1 ID=evm.model.Chr09.2462_hau_v1; Name=evm.model.Chr09.2462; organism=Vigna unguiculata subsp. sesquipedalis; type=mRNA; length=955bp; location=Sequence derived from: Chr09:35714696..35715650- (Vigna unguiculata subsp. sesquipedalisback to top Coding sequence (CDS) from alignment at Chr09:35714696..35715650- >evm.model.Chr09.2462_hau_v1 ID=evm.model.Chr09.2462_hau_v1; Name=evm.model.Chr09.2462; organism=Vigna unguiculata subsp. sesquipedalis; type=CDS; length=867bp; location=Sequence derived from: Chr09:35714696..35715650- (Vigna unguiculata subsp. sesquipedalisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|