jg43333.t1

Transcript Overview
Namejg43333.t1
Unique Namejg43333.t1_Vsativa-uoa_v1
TypemRNA
OrganismVicia sativa (vetch)
Sequence length270
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr1chromosomeChr1:135394082..135394351 +Vicia sativa cv. Studenica genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anvssL0238Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvssL0513Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvssL0565Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvssL1036Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cavssL118Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavssL409Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavssL651Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crvssL124Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvssL507Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvssL137Pisum sativum Cameor genome v1aPisum sativum
psvssL147Pisum sativum Cameor genome v1aPisum sativum
psvssL150Pisum sativum Cameor genome v1aPisum sativum
psvssL343Pisum sativum Cameor genome v1aPisum sativum
psvssL472Pisum sativum Cameor genome v1aPisum sativum
tifvssL012Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvssL269Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvssL362Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvssL366Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvssL217Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvssL511Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvssL474Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvssL493Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvssL879Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vfhvssL010Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvssL115Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvssL214Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvssL414Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvssL444Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvssL462Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vssvssR043Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvssR069Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuR038Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vssvuR062Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vssvuR067Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vssvuaR026Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vssvuaR043Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vssvuaR051Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vsszwsR035Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vsszwsR054Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vsszwsR064Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vssvuaR131Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvssL100Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvssL594Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvssL246Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvssL263Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvssL581Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvssL770Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvssL590Cicer arietinum
carvssL594Cicer arietinum
carvssL704Cicer arietinum
ccavssL134Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavssL143Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavssL308Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavssL561Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vssvumR009Vigna umbellata FF25 genome v1.0Vigna umbellata
vssvumR026Vigna umbellata FF25 genome v1.0Vigna umbellata
vssvumR069Vigna umbellata FF25 genome v1.0Vigna umbellata
vssvumR098Vigna umbellata FF25 genome v1.0Vigna umbellata
vssvumR107Vigna umbellata FF25 genome v1.0Vigna umbellata
vssvvaR077Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vssvvaR104Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vssvstR020Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vssvstR024Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vssvstR034Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vssvstR068Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vssvstR076Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvssL004Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvssL021Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvssL135Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvssL207Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvssL237Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvssL237Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvssL324Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvssL326Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvssL830Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vssvunR027Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vssvunR050Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jg43333jg43333_Vsativa-uoa_v1Vicia sativagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
jg43333.t1.exon1jg43333.t1.exon1_Vsativa-uoa_v1Vicia sativaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
jg43333.t1.CDS1jg43333.t1.CDS1_Vsativa-uoa_v1Vicia sativaCDS


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
jg43333.t1.start1jg43333.t1.start1_Vsativa-uoa_v1Vicia sativastart_codon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
jg43333.t1.stop1jg43333.t1.stop1_Vsativa-uoa_v1Vicia sativastop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jg43333.t1_Vsativa-uoa_v1jg43333.t1_Vsativa-uoa_v1Vicia sativapolypeptide
jg43333.t1_Vsativa-uoa_v1jg43333.t1_Vsativa-uoa_v1-proteinVicia sativapolypeptide


Homology
[Close]
BLAST of jg43333.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P6ACT0|A0A6P6ACT0_DURZI (DNA damage-binding protein 1a-like isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111308546 PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.696e-18
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDWTSE---FLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            ++FL  LQ  + +V++ VGGLSH +WR F +E   T+E   FLDGDLIESFLDL   +ME IS+A+  SVEELS+ VE L RLH
Sbjct:  985 YAFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKK-TAEAKNFLDGDLIESFLDLSRGKMEDISKAMGVSVEELSKRVEELTRLH 1067
[Close]
BLAST of jg43333.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A2ZAI3|A0A6A2ZAI3_HIBSY (DNA damage-binding protein 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111005pilonHSYRG00186 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.669e-18
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDWT--SEFLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            + FL  LQ  + +V++ VGGLSH +WR F +E        FLDGDLIESFLDL   +ME+IS+AVN SVEELS+ VE L RLH
Sbjct:  972 YIFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKNFLDGDLIESFLDLSRGKMEEISKAVNVSVEELSKRVEELTRLH 1054
[Close]
BLAST of jg43333.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A3CA25|A0A6A3CA25_HIBSY (DNA damage-binding protein 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00007895pilonHSYRG00091 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.726e-18
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDWTSE---FLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            + FL  LQ  + +V++ VGGLSH +WR F +E   T+E   FLDGDLIESFLDL   +ME+IS+AVN SVEELS+ VE L RLH
Sbjct:  983 YIFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEK-RTAEAKIFLDGDLIESFLDLSRGKMEEISKAVNVSVEELSKRVEELTRLH 1065
[Close]
BLAST of jg43333.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P6U8L9|A0A6P6U8L9_COFAR (LOW QUALITY PROTEIN: DNA damage-binding protein 1-like OS=Coffea arabica OX=13443 GN=LOC113708724 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.134e-18
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDW--TSEFLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            ++FL  LQ  + +V++ VGGLSH +WR F +E     +  FLDGDLIESFLDL  + ME+IS+A+N  VEEL + VE L RLH
Sbjct: 1007 YTFLEKLQATLRKVIKGVGGLSHEQWRSFCNEKKTVESKNFLDGDLIESFLDLSRNRMEEISKAMNVXVEELMKRVEELTRLH 1089
[Close]
BLAST of jg43333.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A022PY42|A0A022PY42_ERYGU (CPSF_A domain-containing protein (Fragment) OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a0005922mg PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.834e-18
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDW--TSEFLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            + FL  LQ  M +V++ VGGLSH +WR F +E        FLDGDLIESFLDL  ++ME++S+A+N  VEEL + VE L RLH
Sbjct:  507 YVFLEKLQTNMRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLNRNQMEEVSKAINVPVEELMKRVEELTRLH 589
[Close]
BLAST of jg43333.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A445JDY8|A0A445JDY8_GLYSO (DNA damage-binding protein 1 OS=Glycine soja OX=3848 GN=D0Y65_020410 PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.236e-17
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDWTS--EFLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            + FL  LQ  + +V++ VGGLSH +WR F +E        FLDGDLIESFLDL   +M++IS+AV+ SVEEL + VE L RLH
Sbjct: 1007 YVFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVEARNFLDGDLIESFLDLNRSKMDEISKAVDVSVEELCKRVEELTRLH 1089
[Close]
BLAST of jg43333.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A803R959|A0A803R959_CANSA (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.526e-17
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDW--TSEFLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            + FL  LQ  + +V++ VGGLSH +WR F +E        FLDGDLIESFLDL   +ME IS+    SVEEL + VE L RLH
Sbjct:   34 YVFLEKLQTSLRKVIKGVGGLSHEQWRSFSNEKKTVEAKNFLDGDLIESFLDLNRSKMEDISKQTGVSVEELCKRVEELTRLH 116
[Close]
BLAST of jg43333.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0IL47|A0A0R0IL47_SOYBN (CPSF_A domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_08G129900 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-17
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDWTS--EFLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            + FL  LQ  + +V++ VGGLSH +WR F +E        FLDGDLIESFLDL   +M++IS+AV+ SVEEL + VE L RLH
Sbjct:  121 YVFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVEARNFLDGDLIESFLDLNRSKMDEISKAVDVSVEELCKRVEELTRLH 203
[Close]
BLAST of jg43333.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A6J1AGX1|A0A6J1AGX1_9ROSI (DNA damage-binding protein 1 OS=Herrania umbratica OX=108875 GN=LOC110417934 PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.607e-17
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDW--TSEFLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            ++FL  LQ  + +V++ VGGLSH +WR F +E        FLDGDLIESFLDL   +ME+IS+A++ SVEELS+ VE L RLH
Sbjct: 1006 YAFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVEAKNFLDGDLIESFLDLSRGKMEEISKAMSVSVEELSKRVEELTRLH 1088
[Close]
BLAST of jg43333.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A061DX09|A0A061DX09_THECC (Damaged DNA binding protein 1A isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_006077 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.617e-17
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDW--TSEFLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            ++FL  LQ  + +V++ VGGLSH +WR F +E        FLDGDLIESFLDL   +ME+IS+A++ SVEELS+ VE L RLH
Sbjct:  903 YAFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVEAKNFLDGDLIESFLDLSRGKMEEISKAMSVSVEELSKRVEELTRLH 985
[Close]
BLAST of jg43333.t1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9M0V3|DDB1A_ARATH (DNA damage-binding protein 1a OS=Arabidopsis thaliana OX=3702 GN=DDB1A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.766e-19
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDWTSE---FLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            ++FL  LQ  + +V++ VGGLSH +WR F +E   T+E   FLDGDLIESFLDL  ++ME IS+++N  VEEL + VE L RLH
Sbjct: 1006 YTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKR-TAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088
[Close]
BLAST of jg43333.t1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6QNU4|DDB1_SOLLC (DNA damage-binding protein 1 OS=Solanum lycopersicum OX=4081 GN=DDB1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.286e-18
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDW--TSEFLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            + FL  LQ  + +V++ VGGLSH +WR F +E        FLDGDLIESFLDL  + ME+IS+A++  VEEL + VE L RLH
Sbjct: 1008 YLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1090
[Close]
BLAST of jg43333.t1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6E7D1|DDB1_SOLCE (DNA damage-binding protein 1 OS=Solanum cheesmaniae OX=142759 GN=DDB1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.309e-18
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDW--TSEFLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            + FL  LQ  + +V++ VGGLSH +WR F +E        FLDGDLIESFLDL  + ME+IS+A++  VEEL + VE L RLH
Sbjct: 1013 YLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1095
[Close]
BLAST of jg43333.t1 vs. UniProtKB/Swiss-Prot
Match: sp|O49552|DDB1B_ARATH (DNA damage-binding protein 1b OS=Arabidopsis thaliana OX=3702 GN=DDB1B PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.620e-18
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDWTSE---FLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            ++FL  LQ  + +V++ VGGLSH +WR F +E   T+E   +LDGDLIESFLDL   +ME+IS+ ++  VEEL + VE L RLH
Sbjct: 1006 YAFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKR-TAEAKGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKRVEELTRLH 1088
[Close]
BLAST of jg43333.t1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6L4S0|DDB1_ORYSJ (DNA damage-binding protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DBB1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.545e-16
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDWTSE---FLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            + FL  LQ  + + ++ VG LSH +WR F ++   TSE   FLDGDLIESFLDL  ++ME++++ +   VEELS+ VE L RLH
Sbjct: 1008 YVFLEKLQSTLVKFIKGVGNLSHEQWRSFHNDKK-TSEARNFLDGDLIESFLDLSRNKMEEVAKGMGVPVEELSKRVEELTRLH 1090
[Close]
BLAST of jg43333.t1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9XYZ5|DDB1_DROME (DNA damage-binding protein 1 OS=Drosophila melanogaster OX=7227 GN=pic PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 5.026e-11
Identity = 33/92 (35.87%), Postives = 56/92 (60.87%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFK--SENDWTSEFLDGDLIESFLDLQSDEMEKISRAVNRS---------VEELSEIVERLRRLH 82
            + FL  L+ ++ ++++SVG + HT +R F+  S+ + +  F+DGDLIESFLDL  D+M    + +  +         VE++ +IVE L R+H
Sbjct: 1049 YDFLHGLEERLKKIIKSVGKIEHTYYRNFQINSKVEPSEGFIDGDLIESFLDLSRDKMRDAVQGLELTLNGERKSADVEDVIKIVEDLTRMH 1140
[Close]
BLAST of jg43333.t1 vs. UniProtKB/Swiss-Prot
Match: sp|Q805F9|DDB1_CHICK (DNA damage-binding protein 1 OS=Gallus gallus OX=9031 GN=DDB1 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.770e-10
Identity = 31/93 (33.33%), Postives = 57/93 (61.29%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSE--NDWTSEFLDGDLIESFLDLQSDEMEKISRAVN----------RSVEELSEIVERLRRLH 82
            ++ L  +Q ++++V++SVG + H+ WR F +E   +  + F+DGDLIESFLD+   +M+++   +            +V++L +IVE L R+H
Sbjct: 1048 YNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH 1140
[Close]
BLAST of jg43333.t1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6P6Z0|DDB1_XENLA (DNA damage-binding protein 1 OS=Xenopus laevis OX=8355 GN=ddb1 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 6.864e-10
Identity = 31/93 (33.33%), Postives = 58/93 (62.37%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSE--NDWTSEFLDGDLIESFLDLQSDEMEKI--------SRAVNR--SVEELSEIVERLRRLH 82
            ++ L  +Q ++++V++SVG + H+ WR F +E   +  + F+DGDLIESFLD+   +M+++           + R  +V++L ++VE L R+H
Sbjct: 1048 YNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVIANLQIDDGSGMKRETTVDDLIKVVEELTRIH 1140
[Close]
BLAST of jg43333.t1 vs. Araport11
Match: AT4G05420.1 (| damaged DNA binding protein 1A | Chr4:2746288-2752663 FORWARD LENGTH=1088 | 201606)

HSP 1 Score: 83.9593 bits (206), Expect = 2.830e-20
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDWTSE---FLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            ++FL  LQ  + +V++ VGGLSH +WR F +E   T+E   FLDGDLIESFLDL  ++ME IS+++N  VEEL + VE L RLH
Sbjct: 1006 YTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKR-TAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088
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BLAST of jg43333.t1 vs. Araport11
Match: AT4G05420.2 (| damaged DNA binding protein 1A | Chr4:2746288-2752663 FORWARD LENGTH=1067 | 201606)

HSP 1 Score: 83.5741 bits (205), Expect = 3.147e-20
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDWTSE---FLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            ++FL  LQ  + +V++ VGGLSH +WR F +E   T+E   FLDGDLIESFLDL  ++ME IS+++N  VEEL + VE L RLH
Sbjct:  985 YTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKR-TAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1067
[Close]
BLAST of jg43333.t1 vs. Araport11
Match: AT4G21100.1 (| damaged DNA binding protein 1B | Chr4:11258916-11265309 REVERSE LENGTH=1088 | 201606)

HSP 1 Score: 80.8777 bits (198), Expect = 2.680e-19
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 0 
Query:    2 FSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDWTSE---FLDGDLIESFLDLQSDEMEKISRAVNRSVEELSEIVERLRRLH 82
            ++FL  LQ  + +V++ VGGLSH +WR F +E   T+E   +LDGDLIESFLDL   +ME+IS+ ++  VEEL + VE L RLH
Sbjct: 1006 YAFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKR-TAEAKGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKRVEELTRLH 1088
The following BLAST results are available for this feature:
BLAST of jg43333.t1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-15 (Blastp of Vicia sativa cv. Studenica proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A6P6ACT0|A0A6P6ACT0_DURZI3.696e-1855.95DNA damage-binding protein 1a-like isoform X2 OS=D... [more]
tr|A0A6A2ZAI3|A0A6A2ZAI3_HIBSY5.669e-1856.63DNA damage-binding protein 1 OS=Hibiscus syriacus ... [more]
tr|A0A6A3CA25|A0A6A3CA25_HIBSY5.726e-1858.33DNA damage-binding protein 1 OS=Hibiscus syriacus ... [more]
tr|A0A6P6U8L9|A0A6P6U8L9_COFAR6.134e-1853.01LOW QUALITY PROTEIN: DNA damage-binding protein 1-... [more]
tr|A0A022PY42|A0A022PY42_ERYGU8.834e-1853.01CPSF_A domain-containing protein (Fragment) OS=Ery... [more]
tr|A0A445JDY8|A0A445JDY8_GLYSO1.236e-1753.01DNA damage-binding protein 1 OS=Glycine soja OX=38... [more]
tr|A0A803R959|A0A803R959_CANSA1.526e-1751.81Uncharacterized protein OS=Cannabis sativa OX=3483... [more]
tr|A0A0R0IL47|A0A0R0IL47_SOYBN1.528e-1753.01CPSF_A domain-containing protein OS=Glycine max OX... [more]
tr|A0A6J1AGX1|A0A6J1AGX1_9ROSI1.607e-1754.22DNA damage-binding protein 1 OS=Herrania umbratica... [more]
tr|A0A061DX09|A0A061DX09_THECC1.617e-1754.22Damaged DNA binding protein 1A isoform 3 OS=Theobr... [more]
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BLAST of jg43333.t1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-15 (Blastp of Vicia sativa cv. Studenica proteins vs UniProt Swissprot)
Total hits: 8
Match NameE-valueIdentityDescription
sp|Q9M0V3|DDB1A_ARATH2.766e-1953.57DNA damage-binding protein 1a OS=Arabidopsis thali... [more]
sp|Q6QNU4|DDB1_SOLLC2.286e-1851.81DNA damage-binding protein 1 OS=Solanum lycopersic... [more]
sp|Q6E7D1|DDB1_SOLCE2.309e-1851.81DNA damage-binding protein 1 OS=Solanum cheesmania... [more]
sp|O49552|DDB1B_ARATH2.620e-1851.19DNA damage-binding protein 1b OS=Arabidopsis thali... [more]
sp|Q6L4S0|DDB1_ORYSJ2.545e-1648.81DNA damage-binding protein 1 OS=Oryza sativa subsp... [more]
sp|Q9XYZ5|DDB1_DROME5.026e-1135.87DNA damage-binding protein 1 OS=Drosophila melanog... [more]
sp|Q805F9|DDB1_CHICK2.770e-1033.33DNA damage-binding protein 1 OS=Gallus gallus OX=9... [more]
sp|Q6P6Z0|DDB1_XENLA6.864e-1033.33DNA damage-binding protein 1 OS=Xenopus laevis OX=... [more]
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BLAST of jg43333.t1 vs. Araport11
Analysis Date: 2023-06-15 (Blastp of Vicia sativa cv. Studenica proteins vs arabidopsis Araport11)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G05420.12.830e-2053.57| damaged DNA binding protein 1A | Chr4:2746288-27... [more]
AT4G05420.23.147e-2053.57| damaged DNA binding protein 1A | Chr4:2746288-27... [more]
AT4G21100.12.680e-1951.19| damaged DNA binding protein 1B | Chr4:11258916-1... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia sativa cv. Studenica genome v1.0
Date Performed: 2023-06-15
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalPFAMPF03178CPSF_Acoord: 2..51
e-value: 2.0E-9
score: 37.2
NoneNo IPR availableGENE3D1.10.150.910coord: 1..82
e-value: 2.5E-22
score: 81.0
NoneNo IPR availablePANTHERPTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYcoord: 2..71

Sequences
The following sequences are available for this feature:

mRNA sequence

>jg43333.t1_Vsativa-uoa_v1 ID=jg43333.t1_Vsativa-uoa_v1; Name=jg43333.t1; organism=Vicia sativa; type=mRNA; length=270bp
ATGTTCAGCTTTTTGAGGGTGCTTCAATTGAAAATGAGCGAGGTGATGGA
ATCTGTTGGAGGGCTAAGCCATACAGAGTGGAGAGGGTTTAAATCAGAAA
ATGATTGGACTTCTGAATTTTTGGATGGTGATTTGATAGAATCCTTTCTT
GATCTCCAGTCCGATGAGATGGAAAAGATTTCTAGAGCAGTGAATCGTTC
GGTAGAAGAGTTAAGTGAAATTGTTGAAAGGCTGAGAAGGTTGCACTCAG
CTTATCCACTTATCAGTTGA
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protein sequence of jg43333.t1_Vsativa-uoa_v1

>jg43333.t1_Vsativa-uoa_v1 ID=jg43333.t1_Vsativa-uoa_v1; Name=jg43333.t1_Vsativa-uoa_v1; organism=Vicia sativa; type=polypeptide; length=89bp
MFSFLRVLQLKMSEVMESVGGLSHTEWRGFKSENDWTSEFLDGDLIESFL
DLQSDEMEKISRAVNRSVEELSEIVERLRRLHSAYPLIS
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mRNA from alignment at Chr1:135394082..135394351+

Legend: exonCDSstart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>jg43333.t1_Vsativa-uoa_v1 ID=jg43333.t1_Vsativa-uoa_v1; Name=jg43333.t1; organism=Vicia sativa; type=mRNA; length=270bp; location=Sequence derived from: Chr1:135394082..135394351+ (Vicia sativa
ATGTTCAGCTTTTTGAGGGTGCTTCAATTGAAAATGAGCGAGGTGATGGA
ATCTGTTGGAGGGCTAAGCCATACAGAGTGGAGAGGGTTTAAATCAGAAA
ATGATTGGACTTCTGAATTTTTGGATGGTGATTTGATAGAATCCTTTCTT
GATCTCCAGTCCGATGAGATGGAAAAGATTTCTAGAGCAGTGAATCGTTC
GGTAGAAGAGTTAAGTGAAATTGTTGAAAGGCTGAGAAGGTTGCACTCAG
CTTATCCACTTATCAGTTGA
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Coding sequence (CDS) from alignment at Chr1:135394082..135394351+

>jg43333.t1_Vsativa-uoa_v1 ID=jg43333.t1_Vsativa-uoa_v1; Name=jg43333.t1; organism=Vicia sativa; type=CDS; length=270bp; location=Sequence derived from: Chr1:135394082..135394351+ (Vicia sativa
ATGTTCAGCTTTTTGAGGGTGCTTCAATTGAAAATGAGCGAGGTGATGGA
ATCTGTTGGAGGGCTAAGCCATACAGAGTGGAGAGGGTTTAAATCAGAAA
ATGATTGGACTTCTGAATTTTTGGATGGTGATTTGATAGAATCCTTTCTT
GATCTCCAGTCCGATGAGATGGAAAAGATTTCTAGAGCAGTGAATCGTTC
GGTAGAAGAGTTAAGTGAAATTGTTGAAAGGCTGAGAAGGTTGCACTCAG
CTTATCCACTTATCAGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR004871Cleavage/polyA-sp_fac_asu_C
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding