rna-XM_004496092.3
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_004496092.3 vs. Araport11
Match: | (Symbols: SMR6 | | chr5:16202465-16202803 FORWARD LENGTH=112) HSP 1 Score: 47.7506 bits (112), Expect = 1.273e-7 Identity = 19/36 (52.78%), Postives = 29/36 (80.56%), Query Frame = 0 Query: 82 TPTSKESKIPEIMTCPPAPKKPKPFVSCKRKLMDEF 117 TPT+KE+KIPE++ CPPAP+K +P + C+ ++ EF Sbjct: 62 TPTAKETKIPELLECPPAPRKRRPALKCRSNVVREF 97
BLAST of rna-XM_004496092.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XXP8|A0A1S2XXP8_CICAR (Cyclin-dependent protein kinase inhibitor SMR2 OS=Cicer arietinum OX=3827 GN=LOC101503936 PE=4 SV=1) HSP 1 Score: 293.508 bits (750), Expect = 2.779e-100 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 Query: 1 MSTDLHIHHQLPKLRISSADQIPDHVHAMSSTVIAPPEIKIKSEIQIQIEIEKEDENESQSESEAVVGAVVADGENEESYRTPTSKESKIPEIMTCPPAPKKPKPFVSCKRKLMDEFQFFEVSNNEDMDAFFRSTFPKRTCPCT 144 MSTDLHIHHQLPKLRISSADQIPDHVHAMSSTVIAPPEIKIKSEIQIQIEIEKEDENESQSESEAVVGAVVADGENEESYRTPTSKESKIPEIMTCPPAPKKPKPFVSCKRKLMDEFQFFEVSNNEDMDAFFRSTFPKRTCPCT Sbjct: 1 MSTDLHIHHQLPKLRISSADQIPDHVHAMSSTVIAPPEIKIKSEIQIQIEIEKEDENESQSESEAVVGAVVADGENEESYRTPTSKESKIPEIMTCPPAPKKPKPFVSCKRKLMDEFQFFEVSNNEDMDAFFRSTFPKRTCPCT 144
BLAST of rna-XM_004496092.3 vs. UniProtKB/TrEMBL
Match: tr|A0A392NKZ1|A0A392NKZ1_9FABA (Cyclin-dependent protein kinase inhibitor SIM-like (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 6.961e-54 Identity = 94/149 (63.09%), Postives = 110/149 (73.83%), Query Frame = 0 Query: 1 MSTDLHIHH-QLPKLRISSA--DQIPDHVHAMSSTVIAPPEIKIKSEIQIQIEIEKEDENESQSESEAVVGAVVADG--ENEESYRTPTSKESKIPEIMTCPPAPKKPKPFVSCKRKLMDEFQFFEVSNNEDMDAFFRSTFPKRTCPCT 144 MSTDLH+HH QLPKLRI++ D + V SS I P ++ + + I + DE Q+E++A V DG EN++SYRTPTSKESKIPEI CPPAP+KPKPFVSCKRKLMDEFQFFEVSNNED+DAFFRSTFPKRTCPCT Sbjct: 6 MSTDLHLHHHQLPKLRITAVKLDDDVEEVTTPSSDQIIPDDVVVADTMSSSTAITQPDE-IIQNENDATDDGTVVDGVNENDQSYRTPTSKESKIPEIQDCPPAPRKPKPFVSCKRKLMDEFQFFEVSNNEDIDAFFRSTFPKRTCPCT 153
BLAST of rna-XM_004496092.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LM98|A0A2Z6LM98_TRISU (Cyclin-dependent protein kinase inhibitor SMR3 OS=Trifolium subterraneum OX=3900 GN=TSUD_37600 PE=4 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 8.796e-54 Identity = 94/151 (62.25%), Postives = 110/151 (72.85%), Query Frame = 0 Query: 1 MSTDLHIH-HQLPKLRISSADQIPDHVHAM----SSTVIAPPEIKIKSEIQIQIEIEKEDENESQSESEAVVGAVVADGEN--EESYRTPTSKESKIPEIMTCPPAPKKPKPFVSCKRKLMDEFQFFEVSNNEDMDAFFRSTFPKRTCPCT 144 MSTDLH+H HQLPKLRI++ + + D S +I P ++ + + I + DE Q+E++A V DGEN +ESYRTPTSKESKIPEI CPPAP+KPKPFVSCKRKLMDEFQFFEVSNNEDMDAFFRSTFPKRTCPCT Sbjct: 1 MSTDLHLHNHQLPKLRITAVN-LDDKEQVTTPNSSDQIIIPHDVVVPDTMSSSATITQPDET-IQNENDATDDGTVVDGENQTDESYRTPTSKESKIPEIQDCPPAPRKPKPFVSCKRKLMDEFQFFEVSNNEDMDAFFRSTFPKRTCPCT 149
BLAST of rna-XM_004496092.3 vs. UniProtKB/TrEMBL
Match: tr|B7FH61|B7FH61_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25484850 PE=2 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 6.812e-52 Identity = 97/159 (61.01%), Postives = 104/159 (65.41%), Query Frame = 0 Query: 1 MSTDLHIHHQLPKLRISSA---------------DQIPDHVHAMSSTVIAPPEIKIKSEIQIQIEIEKEDENESQSESEAVVGAVVADGENEESYRTPTSKESKIPEIMTCPPAPKKPKPFVSCKRKLMDEFQFFEVSNNEDMDAFFRSTFPKRTCPCT 144 MSTDLH+ QLP LRIS+A DQ+PD MSS+ I PEI E E V GAVV DGE +ESYRTPTSKESKIPEI CPPAP+KPKPFVSCKRKLMD+FQFFEV NNEDMDAFFRSTFPKRTCPCT Sbjct: 1 MSTDLHLQ-QLPTLRISAAVDNLDDDDDVVTPSSDQVPDVADTMSSSAIIEPEI----------------------EKENVDGAVV-DGEIDESYRTPTSKESKIPEIHDCPPAPRKPKPFVSCKRKLMDDFQFFEVKNNEDMDAFFRSTFPKRTCPCT 135
BLAST of rna-XM_004496092.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MA63|A0A2K3MA63_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g043778 PE=4 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.450e-50 Identity = 95/188 (50.53%), Postives = 117/188 (62.23%), Query Frame = 0 Query: 1 MSTDLHIHH-QLPKLRISSADQIPDHVHAM----SSTVIAP--PEIKIKSEIQIQIEIEKE--------------------------------DE---NESQSESEAVVGAVVADG--ENEESYRTPTSKESKIPEIMTCPPAPKKPKPFVSCKRKLMDEFQFFEVSNNEDMDAFFRSTFPKRTCPCT 144 MSTDLH+HH QLPKLRI++ ++ D V + S +I P P+++I + +++ +E++ DE NE+ + A V DG EN++SYRTPTSKESKIPEI CPPAP+KPKPFVSCKRKLMDE QFFEVSNNEDMDAFFRSTFPKRTCPCT Sbjct: 1 MSTDLHLHHHQLPKLRINAVVKLDDDVEEVTTPSSDQIIIPDXPKLRINAVVKLDDNVEEDVVTTPSSDQIIIPDDVVAIADTMSSSTAITQPDEIIQNENDATVTATDDGTVVDGVNENDQSYRTPTSKESKIPEIQDCPPAPRKPKPFVSCKRKLMDELQFFEVSNNEDMDAFFRSTFPKRTCPCT 188
BLAST of rna-XM_004496092.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8MI08|A0A8B8MI08_ABRPR (Cyclin-dependent protein kinase inhibitor SMR1 OS=Abrus precatorius OX=3816 GN=LOC113873392 PE=4 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 5.532e-49 Identity = 85/146 (58.22%), Postives = 102/146 (69.86%), Query Frame = 0 Query: 1 MSTDLHIHHQLPKLRISSA--DQIPDHVHAMSSTVIAPPEIKIKSEIQIQIEIEKEDENESQSESEAVVGAVVADGENEESYRTPTSKESKIPEIMTCPPAPKKPKPFVSCKRKLMDEFQFFEVSNNEDMDAFFRSTFPKRTCPCT 144 MSTDLH+HH+LPKLRI++ D +P H +SS V E+EN+ GAV ++EESYRTPTSKESKIP ++TCPPAP+KPKPFVSCKRKL+DEFQFFEV++ EDMDAFFRSTFPKR+CPCT Sbjct: 1 MSTDLHLHHELPKLRIAAVKIDDVPSPDHDISSVVT-----------------RAENEND---------GAVTV-ADDEESYRTPTSKESKIPAVLTCPPAPRKPKPFVSCKRKLLDEFQFFEVTSKEDMDAFFRSTFPKRSCPCT 119
BLAST of rna-XM_004496092.3 vs. UniProtKB/TrEMBL
Match: tr|A0A151T0T2|A0A151T0T2_CAJCA (Cyclin-dependent protein kinase inhibitor SMR1 OS=Cajanus cajan OX=3821 GN=KK1_023070 PE=4 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 2.896e-45 Identity = 86/147 (58.50%), Postives = 100/147 (68.03%), Query Frame = 0 Query: 1 MSTDLHIHHQLPKLRISSA---DQIPDHVHAMSSTVIAPPEIKIKSEIQIQIEIEKEDENESQSESEAVVGAVVADGENEESYRTPTSKESKIPEIMTCPPAPKKPKPFVSCKRKLMDEFQFFEVSNNEDMDAFFRSTFPKRTCPCT 144 MSTDLH+HH+LPKLRI++ D +SS V PPE D+N + + A + A E +ESYRTPTSKES+IP IMTCPPAPKK KPF+SCKRKL+DEFQFFEVS NEDMDAFFRSTFPKR+CPCT Sbjct: 1 MSTDLHLHHELPKLRIAAVKLEDAPSSPRREVSSVVDTPPE----------------DQNHVAAGATAGAASATAGTEEDESYRTPTSKESRIPAIMTCPPAPKKAKPFISCKRKLLDEFQFFEVS-NEDMDAFFRSTFPKRSCPCT 130
BLAST of rna-XM_004496092.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SP19|A0A0S3SP19_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G121200 PE=4 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.284e-43 Identity = 79/148 (53.38%), Postives = 99/148 (66.89%), Query Frame = 0 Query: 1 MSTDLHIHHQLPKLRISSA--DQIPD--HVHAMSSTVIAPPEIKIKSEIQIQIEIEKEDENESQSESEAVVGAVVADGENEESYRTPTSKESKIPEIMTCPPAPKKPKPFVSCKRKLMDEFQFFEVSNNEDMDAFFRSTFPKRTCPCT 144 MSTD H+HH LPKLRI++ D +P H+ A+ S+ + +++ Q Q E ++A A E +ESYRTPTSKESKIP IM+CPPAP+KPK F SCKRKL D+FQFF+V+N EDMDAFFRSTFPKR+C CT Sbjct: 1 MSTDFHLHHDLPKLRIAAVKIDDVPSDHHLDALVSSSVV-----TRADNQTQQEETVAVAVTVTVPADAPTVA-----EEDESYRTPTSKESKIPAIMSCPPAPRKPKAFASCKRKLFDDFQFFDVTNKEDMDAFFRSTFPKRSCTCT 138
BLAST of rna-XM_004496092.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TDW6|A0A0L9TDW6_PHAAN (Cyclin-dependent protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0190630 PE=4 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.284e-43 Identity = 79/148 (53.38%), Postives = 99/148 (66.89%), Query Frame = 0 Query: 1 MSTDLHIHHQLPKLRISSA--DQIPD--HVHAMSSTVIAPPEIKIKSEIQIQIEIEKEDENESQSESEAVVGAVVADGENEESYRTPTSKESKIPEIMTCPPAPKKPKPFVSCKRKLMDEFQFFEVSNNEDMDAFFRSTFPKRTCPCT 144 MSTD H+HH LPKLRI++ D +P H+ A+ S+ + +++ Q Q E ++A A E +ESYRTPTSKESKIP IM+CPPAP+KPK F SCKRKL D+FQFF+V+N EDMDAFFRSTFPKR+C CT Sbjct: 1 MSTDFHLHHDLPKLRIAAVKIDDVPSDHHLDALVSSSVV-----TRADNQTQQEETVAVAVTVTVPADAPTVA-----EEDESYRTPTSKESKIPAIMSCPPAPRKPKAFASCKRKLFDDFQFFDVTNKEDMDAFFRSTFPKRSCTCT 138
BLAST of rna-XM_004496092.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V2L0|A0A1S3V2L0_VIGRR (Uncharacterized protein LOC106771176 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771176 PE=4 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.952e-42 Identity = 78/148 (52.70%), Postives = 98/148 (66.22%), Query Frame = 0 Query: 1 MSTDLHIHHQLPKLRISSA--DQIPD--HVHAMSSTVIAPPEIKIKSEIQIQIEIEKEDENESQSESEAVVGAVVADGENEESYRTPTSKESKIPEIMTCPPAPKKPKPFVSCKRKLMDEFQFFEVSNNEDMDAFFRSTFPKRTCPCT 144 MSTD H+HH LPKLRI++ D +P H+ A+ S+ + +++ Q E ++A A E +ESYRTPTSKESKIP IM+CPPAP+KPK F SCKRKL D+FQFF+V+N EDMDAFFRSTFPKR+C CT Sbjct: 1 MSTDFHLHHDLPKLRIAAVKIDDVPSDHHLDALVSS-----SVLTRADNQTLEEETVTVAVTVTVPADAPTVA-----EEDESYRTPTSKESKIPAIMSCPPAPRKPKAFASCKRKLFDDFQFFDVTNKEDMDAFFRSTFPKRSCTCT 138 The following BLAST results are available for this feature:
BLAST of rna-XM_004496092.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 1
BLAST of rna-XM_004496092.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_004496092.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_004496092.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496092.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496092.3; organism=Cicer arietinum; type=mRNA; length=435bpback to top protein sequence of rna-XM_004496092.3_CaCDCfrontier-NCBI_v1 >rna-XM_004496092.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496092.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496092.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=144bpback to top mRNA from alignment at chr4:8892550..8893396- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_004496092.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496092.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496092.3; organism=Cicer arietinum; type=mRNA; length=847bp; location=Sequence derived from: chr4:8892550..8893396- (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr4:8892550..8893396- >rna-XM_004496092.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496092.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496092.3; organism=Cicer arietinum; type=CDS; length=435bp; location=Sequence derived from: chr4:8892550..8893396- (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|