rna-XM_004505773.2
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_004505773.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:16694576-16695387 FORWARD LENGTH=210) HSP 1 Score: 75.0998 bits (183), Expect = 2.064e-16 Identity = 48/129 (37.21%), Postives = 77/129 (59.69%), Query Frame = 0 Query: 90 LATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQV-ATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRIL-------MENDAQSCSGEND 210 LA Q EK+ +EI F ++QNE+++ +L+ Q K+++ R ME+ AL L++QKE+E+++A K ELE LL + E + W+RMA + E V TL LE+ ++R +E++ C GE D Sbjct: 19 LAAQMEKQKQEIDQFIKIQNERLRYVLQEQRKREMEMILRKMESKALLLMSQKEEEMSKALNKNMELEDLLRKMEMENQTWQRMARENEAIVQTLNTTLEQVRERAATCYDAGEAEVEDEGSFCGGEGD 147
BLAST of rna-XM_004505773.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:16694488-16695387 FORWARD LENGTH=265) HSP 1 Score: 76.2554 bits (186), Expect = 2.193e-16 Identity = 48/129 (37.21%), Postives = 77/129 (59.69%), Query Frame = 0 Query: 90 LATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQV-ATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRIL-------MENDAQSCSGEND 210 LA Q EK+ +EI F ++QNE+++ +L+ Q K+++ R ME+ AL L++QKE+E+++A K ELE LL + E + W+RMA + E V TL LE+ ++R +E++ C GE D Sbjct: 74 LAAQMEKQKQEIDQFIKIQNERLRYVLQEQRKREMEMILRKMESKALLLMSQKEEEMSKALNKNMELEDLLRKMEMENQTWQRMARENEAIVQTLNTTLEQVRERAATCYDAGEAEVEDEGSFCGGEGD 202
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YJR1|A0A1S2YJR1_CICAR (Uncharacterized protein OS=Cicer arietinum OX=3827 GN=LOC101512431 PE=4 SV=1) HSP 1 Score: 446.432 bits (1147), Expect = 2.338e-158 Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0 Query: 1 MVTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFKT 220 MVTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFKT Sbjct: 1 MVTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFKT 220
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6ND85|A0A2Z6ND85_TRISU (RING-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_272400 PE=4 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 2.669e-36 Identity = 83/218 (38.07%), Postives = 130/218 (59.63%), Query Frame = 0 Query: 2 VTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFK 219 + + H + G+PFCI G+ +G+A+ Q RQ QQ Q QQQ Q HV+ P+ V AS V ++ N A+ FEK+ ++ F Q+QN+++K++L+ Q ++QVA R+MEN++ ++L K E+A+AA K + LE+ + +AEKR+ K++ +RE +I L +LEEEKKRVR+ +END +SC GE +E R KR + Sbjct: 1 MANPYPHGNHGFPFCIKGVYPSGLADSQHRQSHQQH--------------PQYQLQQQGQAHVILNPNPHVLASNVF-------NSPNFASLFEKQKQQAEQFVQIQNDKLKLVLQTQREKQVAVLRSMENYSKRVLMTKNGEIARAALKNKVLENRINSLEAEKRDLKKIVEEREAVIIALHNQLEEEKKRVRMFVENDGESCCGEIEEARAAKRVR 197
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A396I2E1|A0A396I2E1_MEDTR (Putative transcription factor C2H2 family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0017931 PE=4 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 7.812e-34 Identity = 85/217 (39.17%), Postives = 131/217 (60.37%), Query Frame = 0 Query: 4 QAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILE-NQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFK 219 Q HSH + G+PF ING GIA +QQ Q Q + QQLQ Q QQ W GHVVP + V AS + L++ S + FEK+ E F QN+++K++L+ +Q + Q+A+ Q++ +K++E+A+ A K QELE+L+ +AE + +++ +RE +ITL +KLEEEKK++R+ +ENDA+SC+GE++E EKR + Sbjct: 2 QPHSHGNHGFPFGINGYYVGGIAGLQQSQHPQHN-------ELQQLQYHQPQNQQLWHGHVVPFFNPHVQASSI------LSYPS-FDSLFEKQVMETNQFINNQNDKLKLLLQQHQRELQLAS--------QQIMTKKKEEIAKLANKTQELENLVRRFEAENKEFEKKVKEREAMIITLHSKLEEEKKKLRMFVENDAKSCTGESEEVILEKRVR 196
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|G7JMD1|G7JMD1_MEDTR (Putative transcription factor C2H2 family OS=Medicago truncatula OX=3880 GN=11439677 PE=4 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.339e-33 Identity = 93/219 (42.47%), Postives = 132/219 (60.27%), Query Frame = 0 Query: 1 MVTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFK 219 M Q SH + +PF +N + G+ ++LQQ Q Q Q QQQWQG+VVP + VHAS V+ + LA FEK+ +E +QN+Q+K +L+ +QQVATFR+ME ++ Q+L +K +E+A+ +KK +LE+LL +AEKR K +AL+R V+TL KLEEEKKRVR+L+ENDA+S GE +E R EKR + Sbjct: 1 MAMQPPSHGNNVFPFYVNDLYLGGL------------VELQQLQPPQYYQQQPPQNQQQWQGNVVPIINSHVHASNVLI-------SPALAALFEKQMQETHELINIQNDQIKFMLQQHTEQQVATFRSMEIYSQQILTRKNEEIAKVVKKKLDLENLLRKLEAEKRELKGIALERGAMVLTLHTKLEEEKKRVRMLVENDAESSCGEKEEVRAEKRVR 200
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A396JD90|A0A396JD90_MEDTR (Putative transcription factor C2H2 family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0319361 PE=4 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 3.486e-29 Identity = 81/216 (37.50%), Postives = 126/216 (58.33%), Query Frame = 0 Query: 6 HSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQ-QVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFKT 220 +SH + G PF N S G+ +QQ Q Q Q Q Q QQQ Q + VP P+ +HAS ++ + + FEK+G+E +QN Q+K++L++ +++ QVAT +NME ++ Q++ + +E+A+ +K QE+E+LL + EKR KR+A +R I L KLEEEKKR R+++ NDA+SC GE++E R EKR ++ Sbjct: 4 YSHDNHGLPFSTNNFFSVGLPELQQHQHPQHNQQQQLQ-------------QQQSQRNFVPVPNPHIHASSILSSPTFVG-------LFEKQGQETDQLINIQNGQIKLMLQHHIRELQVATLKNMEIYSRQIMTKANEEIAKVVKKNQEMENLLRSLETEKRFLKRIAEERGATTIALHNKLEEEKKRARMVVLNDAESCCGESEEARAEKRMRS 199
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NZI1|A0A2Z6NZI1_TRISU (RING-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_272460 PE=4 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 5.128e-27 Identity = 80/214 (37.38%), Postives = 121/214 (56.54%), Query Frame = 0 Query: 6 HSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFK 219 H H + G+ F +N + S G+A QQQQ QQ QQQ Q +V P+ V AS V+ ++ LAT FEK+ +E F Q+QN+++K++L+ Q ++Q R++EN++ Q L K+ E+A+ A K + LE+LL + EKR KR+ +RE VI L ++EEEKKRVR+ +END +SC GE +E + K + Sbjct: 5 HPHGNHGFAFGVNDVYSGGLA----------------MSQQQQQAQYQQHQQQSGQSYVFLNPNPHVDASNVL-------NSPTLATLFEKQHQEAEQFIQIQNDKLKLVLQQQREKQAGVLRSLENYSQQALITKDGEIARVALKNKVLENLLNSLEGEKRELKRIVEEREAMVIALHNQMEEEKKRVRMFVENDGESCCGEIEEAKVAKCLR 195
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6P2Q4|A0A2Z6P2Q4_TRISU (RING-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_272760 PE=4 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.201e-24 Identity = 79/219 (36.07%), Postives = 126/219 (57.53%), Query Frame = 0 Query: 1 MVTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFK 219 M +H + G+PF ING+ +A + QQ+ QQ Q QQQ Q HVV + VHAS V+ ++ LAT FEK+ +E F ++Q++++K++L++Q ++QV +++EN++ Q+L K +E+ +AA K + LE+ L + EKR+ K+ +RE VI L +LEEEKKR R+ +END ++C GE +E R KR + Sbjct: 1 MANPNSTHGNHGFPFYINGVYPGALA------------ESQQRQSHQQQPQYQHHQQQLGQAHVVLNSNPHVHASNVL-------NSPTLATLFEKQKQEAEQFVRIQHDKLKLVLQHQREKQVVILKSLENYSQQVLITKNEEIERAALKNKVLENRLNNLEEEKRDLKKKLEEREAMVIALHNQLEEEKKRARMFVENDGEACYGEIEEARGAKRVR 200
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NLC9|A0A2K3NLC9_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g000254 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.167e-24 Identity = 90/222 (40.54%), Postives = 129/222 (58.11%), Query Frame = 0 Query: 1 MVTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILE-NQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEK--KRVRILMENDAQSCSGENDEGRDEKRFK 219 M Q HSH + G+PFCING CS G+A +QQ Q QQQ Q Q Q QGHV P + VHAS A+ FEK+ ++ F +QN QMK++L+ +QM+ QV R+M +A Q + +K +E+ +A +KK+E+E++L + EKR K+++ ++ ITLR KLEEEK KR+R+L+ ND +SC GEN+E R +K K Sbjct: 1 MAMQPHSHGNNGFPFCINGHCSCGLAQLQQSQYPQQQQQPPQH-------------HHQLQGHV-PIHNPPVHASNY----------PTFASLFEKQRQQTDQFINIQNNQMKLMLQQHQMELQVTAVRSMGIYA-QAMVRKNEEITKAEKKKKEMENILRCLELEKRELKKISEEKGAIAITLRNKLEEEKKNKRLRMLVTNDVESCCGENEEPRPKKCVK 197
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A396I7Z6|A0A396I7Z6_MEDTR (Putative transcription factor C2H2 family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0017891 PE=4 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 7.149e-24 Identity = 79/220 (35.91%), Postives = 122/220 (55.45%), Query Frame = 0 Query: 4 QAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGH---VVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMIL-ENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFK 219 Q HSH + G+ F IN R + +LQ Q PQ + Q Q Q Q ++P + VHAS + L++ + + FEK+ +E Q ++M ++L ++QM+ QVA Q+LA K +E+A+ A K QE+E+L+ +A+KR ++++ +RE +ITL+ KLEEEKK++R+ MENDA SC GEND+ R EKR + Sbjct: 2 QPHSHGNYGFSFNINDY----------RLVRLTELQQSQHPQHNEPQQPQYHPPQHQQQGQGHLLPTSNPHVHASSI------LSYPT-FDSLFEKQAKETNQIINNQKDKMNLLLQKHQMELQVAL--------QQVLAIKNEEIAKTANKAQEMENLIRRFEADKREFEKLVKEREAMIITLQNKLEEEKKKLRVFMENDANSCCGENDDVRIEKRVR 196
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A396JD28|A0A396JD28_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0311321 PE=4 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 8.566e-23 Identity = 80/214 (37.38%), Postives = 128/214 (59.81%), Query Frame = 0 Query: 4 QAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILE-NQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEK 216 Q HSH + G+PF ING +G+ +QQ Q Q + QQ Q Q QQQWQGH+VP + VHAS + L++ + + F+K+ +E F Q+++MK++L+ +Q + Q+A + Q++ +K++E+A+AA+K QELE L+ + E ++++ +RET +ITL KLEEEKK+ + +END +SC E++E R EK Sbjct: 2 QPHSHGNHGFPFGINGYYVSGLVELQQSQHPQYN-------EPQQPQYHPQQHQQQWQGHIVPFLNPHVHASSI------LSYPT-FDSLFQKQVKETNQFINNQSDKMKLLLQQHQRELQLA--------SQQIMTRKKEEIAKAAKKTQELEKLVRRFETENTEFEKIVKERETTIITLHNKLEEEKKKSNMFVENDTKSCCDESEEVRPEK 193 The following BLAST results are available for this feature:
BLAST of rna-XM_004505773.2 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 2
BLAST of rna-XM_004505773.2 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_004505773.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004505773.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004505773.2; organism=Cicer arietinum; type=mRNA; length=663bpback to top protein sequence of rna-XM_004505773.2_CaCDCfrontier-NCBI_v1 >rna-XM_004505773.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004505773.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004505773.2_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=220bpback to top mRNA from alignment at chr6:24610612..24611796+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_004505773.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004505773.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004505773.2; organism=Cicer arietinum; type=mRNA; length=1185bp; location=Sequence derived from: chr6:24610612..24611796+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr6:24610612..24611796+ >rna-XM_004505773.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004505773.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004505773.2; organism=Cicer arietinum; type=CDS; length=663bp; location=Sequence derived from: chr6:24610612..24611796+ (Cicer arietinumback to top |