rna-XM_004505773.2

Transcript Overview
Namerna-XM_004505773.2
Unique Namerna-XM_004505773.2_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length663
Productputative uncharacterized protein DDB_G0271606
References
External references for this mRNA
DatabaseAccession
GeneID101512431
GenBankXM_004505773.2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr6chromosomechr6:24610612..24611796 +Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ancanL0262Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cacanL203Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cacanL252Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0718Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cancanL167Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanL0973Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL1046Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caicanL0642Cicer arietinum ICC 4958 genome v2Cicer arietinum
caicanL0784Cicer arietinum ICC 4958 genome v2Cicer arietinum
canccR0866Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR680Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
canvrvR482Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canvrvR512Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canpvR530Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cantifR456Vicia faba cv. Tiffany genome v1.0Vicia faba
cantifR469Vicia faba cv. Tiffany genome v1.0Vicia faba
canvfhR487Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canpvR640Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvssR554Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR580Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvuaR418Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canzwsR411Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuR452Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuaR493Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR524Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cancarR416Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-KK1_021935Cajanus cajan Asha genome v1.0Cajanus cajan
evm.model.Chr09.1043Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cr_16639.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-TanjilR_17351Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014645016.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun11g186800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014638011.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun09g275600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.009G119200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Phvul.011G036000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
evm.model.Chr11.1706Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Ca_24165Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_17507.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101512431gene-LOC101512431_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_004505773.2-1exon-XM_004505773.2-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004505773.2-2exon-XM_004505773.2-2_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_004505830.1cds-XP_004505830.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS
cds-XP_004505830.1cds-XP_004505830.1_CaCDCfrontier-NCBI_v1_2Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_004505773.2_CaCDCfrontier-NCBI_v1rna-XM_004505773.2_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_004505773.2_CaCDCfrontier-NCBI_v1rna-XM_004505773.2_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
BLAST of rna-XM_004505773.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:16694576-16695387 FORWARD LENGTH=210)

HSP 1 Score: 75.0998 bits (183), Expect = 2.064e-16
Identity = 48/129 (37.21%), Postives = 77/129 (59.69%), Query Frame = 0
Query:   90 LATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQV-ATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRIL-------MENDAQSCSGEND 210
            LA Q EK+ +EI  F ++QNE+++ +L+ Q K+++    R ME+ AL L++QKE+E+++A  K  ELE LL   + E + W+RMA + E  V TL   LE+ ++R           +E++   C GE D
Sbjct:   19 LAAQMEKQKQEIDQFIKIQNERLRYVLQEQRKREMEMILRKMESKALLLMSQKEEEMSKALNKNMELEDLLRKMEMENQTWQRMARENEAIVQTLNTTLEQVRERAATCYDAGEAEVEDEGSFCGGEGD 147          
BLAST of rna-XM_004505773.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:16694488-16695387 FORWARD LENGTH=265)

HSP 1 Score: 76.2554 bits (186), Expect = 2.193e-16
Identity = 48/129 (37.21%), Postives = 77/129 (59.69%), Query Frame = 0
Query:   90 LATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQV-ATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRIL-------MENDAQSCSGEND 210
            LA Q EK+ +EI  F ++QNE+++ +L+ Q K+++    R ME+ AL L++QKE+E+++A  K  ELE LL   + E + W+RMA + E  V TL   LE+ ++R           +E++   C GE D
Sbjct:   74 LAAQMEKQKQEIDQFIKIQNERLRYVLQEQRKREMEMILRKMESKALLLMSQKEEEMSKALNKNMELEDLLRKMEMENQTWQRMARENEAIVQTLNTTLEQVRERAATCYDAGEAEVEDEGSFCGGEGD 202          
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YJR1|A0A1S2YJR1_CICAR (Uncharacterized protein OS=Cicer arietinum OX=3827 GN=LOC101512431 PE=4 SV=1)

HSP 1 Score: 446.432 bits (1147), Expect = 2.338e-158
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
Query:    1 MVTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFKT 220
            MVTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFKT
Sbjct:    1 MVTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFKT 220          
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6ND85|A0A2Z6ND85_TRISU (RING-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_272400 PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.669e-36
Identity = 83/218 (38.07%), Postives = 130/218 (59.63%), Query Frame = 0
Query:    2 VTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFK 219
            +   + H + G+PFCI G+  +G+A+ Q RQ  QQ                Q   QQQ Q HV+  P+  V AS V        ++ N A+ FEK+ ++   F Q+QN+++K++L+ Q ++QVA  R+MEN++ ++L  K  E+A+AA K + LE+ +   +AEKR+ K++  +RE  +I L  +LEEEKKRVR+ +END +SC GE +E R  KR +
Sbjct:    1 MANPYPHGNHGFPFCIKGVYPSGLADSQHRQSHQQH--------------PQYQLQQQGQAHVILNPNPHVLASNVF-------NSPNFASLFEKQKQQAEQFVQIQNDKLKLVLQTQREKQVAVLRSMENYSKRVLMTKNGEIARAALKNKVLENRINSLEAEKRDLKKIVEEREAVIIALHNQLEEEKKRVRMFVENDGESCCGEIEEARAAKRVR 197          
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A396I2E1|A0A396I2E1_MEDTR (Putative transcription factor C2H2 family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0017931 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.812e-34
Identity = 85/217 (39.17%), Postives = 131/217 (60.37%), Query Frame = 0
Query:    4 QAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILE-NQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFK 219
            Q HSH + G+PF ING    GIA +QQ Q  Q         + QQLQ  Q   QQ W GHVVP  +  V AS +      L++ S   + FEK+  E   F   QN+++K++L+ +Q + Q+A+         Q++ +K++E+A+ A K QELE+L+   +AE + +++   +RE  +ITL +KLEEEKK++R+ +ENDA+SC+GE++E   EKR +
Sbjct:    2 QPHSHGNHGFPFGINGYYVGGIAGLQQSQHPQHN-------ELQQLQYHQPQNQQLWHGHVVPFFNPHVQASSI------LSYPS-FDSLFEKQVMETNQFINNQNDKLKLLLQQHQRELQLAS--------QQIMTKKKEEIAKLANKTQELENLVRRFEAENKEFEKKVKEREAMIITLHSKLEEEKKKLRMFVENDAKSCTGESEEVILEKRVR 196          
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|G7JMD1|G7JMD1_MEDTR (Putative transcription factor C2H2 family OS=Medicago truncatula OX=3880 GN=11439677 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.339e-33
Identity = 93/219 (42.47%), Postives = 132/219 (60.27%), Query Frame = 0
Query:    1 MVTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFK 219
            M  Q  SH +  +PF +N +   G+            ++LQQ    Q  Q Q    QQQWQG+VVP  +  VHAS V+        +  LA  FEK+ +E      +QN+Q+K +L+   +QQVATFR+ME ++ Q+L +K +E+A+  +KK +LE+LL   +AEKR  K +AL+R   V+TL  KLEEEKKRVR+L+ENDA+S  GE +E R EKR +
Sbjct:    1 MAMQPPSHGNNVFPFYVNDLYLGGL------------VELQQLQPPQYYQQQPPQNQQQWQGNVVPIINSHVHASNVLI-------SPALAALFEKQMQETHELINIQNDQIKFMLQQHTEQQVATFRSMEIYSQQILTRKNEEIAKVVKKKLDLENLLRKLEAEKRELKGIALERGAMVLTLHTKLEEEKKRVRMLVENDAESSCGEKEEVRAEKRVR 200          
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A396JD90|A0A396JD90_MEDTR (Putative transcription factor C2H2 family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0319361 PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.486e-29
Identity = 81/216 (37.50%), Postives = 126/216 (58.33%), Query Frame = 0
Query:    6 HSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQ-QVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFKT 220
            +SH + G PF  N   S G+  +QQ Q  Q   Q Q Q             QQQ Q + VP P+  +HAS ++ +   +         FEK+G+E      +QN Q+K++L++ +++ QVAT +NME ++ Q++ +  +E+A+  +K QE+E+LL   + EKR  KR+A +R    I L  KLEEEKKR R+++ NDA+SC GE++E R EKR ++
Sbjct:    4 YSHDNHGLPFSTNNFFSVGLPELQQHQHPQHNQQQQLQ-------------QQQSQRNFVPVPNPHIHASSILSSPTFVG-------LFEKQGQETDQLINIQNGQIKLMLQHHIRELQVATLKNMEIYSRQIMTKANEEIAKVVKKNQEMENLLRSLETEKRFLKRIAEERGATTIALHNKLEEEKKRARMVVLNDAESCCGESEEARAEKRMRS 199          
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NZI1|A0A2Z6NZI1_TRISU (RING-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_272460 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.128e-27
Identity = 80/214 (37.38%), Postives = 121/214 (56.54%), Query Frame = 0
Query:    6 HSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFK 219
            H H + G+ F +N + S G+A                  QQQQ    QQ QQQ  Q +V   P+  V AS V+       ++  LAT FEK+ +E   F Q+QN+++K++L+ Q ++Q    R++EN++ Q L  K+ E+A+ A K + LE+LL   + EKR  KR+  +RE  VI L  ++EEEKKRVR+ +END +SC GE +E +  K  +
Sbjct:    5 HPHGNHGFAFGVNDVYSGGLA----------------MSQQQQQAQYQQHQQQSGQSYVFLNPNPHVDASNVL-------NSPTLATLFEKQHQEAEQFIQIQNDKLKLVLQQQREKQAGVLRSLENYSQQALITKDGEIARVALKNKVLENLLNSLEGEKRELKRIVEEREAMVIALHNQMEEEKKRVRMFVENDGESCCGEIEEAKVAKCLR 195          
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6P2Q4|A0A2Z6P2Q4_TRISU (RING-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_272760 PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.201e-24
Identity = 79/219 (36.07%), Postives = 126/219 (57.53%), Query Frame = 0
Query:    1 MVTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFK 219
            M     +H + G+PF ING+    +A            + QQ+   QQ    Q  QQQ  Q HVV   +  VHAS V+       ++  LAT FEK+ +E   F ++Q++++K++L++Q ++QV   +++EN++ Q+L  K +E+ +AA K + LE+ L   + EKR+ K+   +RE  VI L  +LEEEKKR R+ +END ++C GE +E R  KR +
Sbjct:    1 MANPNSTHGNHGFPFYINGVYPGALA------------ESQQRQSHQQQPQYQHHQQQLGQAHVVLNSNPHVHASNVL-------NSPTLATLFEKQKQEAEQFVRIQHDKLKLVLQHQREKQVVILKSLENYSQQVLITKNEEIERAALKNKVLENRLNNLEEEKRDLKKKLEEREAMVIALHNQLEEEKKRARMFVENDGEACYGEIEEARGAKRVR 200          
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NLC9|A0A2K3NLC9_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g000254 PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.167e-24
Identity = 90/222 (40.54%), Postives = 129/222 (58.11%), Query Frame = 0
Query:    1 MVTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILE-NQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEK--KRVRILMENDAQSCSGENDEGRDEKRFK 219
            M  Q HSH + G+PFCING CS G+A +QQ Q  QQQ Q  Q                Q QGHV P  +  VHAS               A+ FEK+ ++   F  +QN QMK++L+ +QM+ QV   R+M  +A Q + +K +E+ +A +KK+E+E++L   + EKR  K+++ ++    ITLR KLEEEK  KR+R+L+ ND +SC GEN+E R +K  K
Sbjct:    1 MAMQPHSHGNNGFPFCINGHCSCGLAQLQQSQYPQQQQQPPQH-------------HHQLQGHV-PIHNPPVHASNY----------PTFASLFEKQRQQTDQFINIQNNQMKLMLQQHQMELQVTAVRSMGIYA-QAMVRKNEEITKAEKKKKEMENILRCLELEKRELKKISEEKGAIAITLRNKLEEEKKNKRLRMLVTNDVESCCGENEEPRPKKCVK 197          
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A396I7Z6|A0A396I7Z6_MEDTR (Putative transcription factor C2H2 family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0017891 PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 7.149e-24
Identity = 79/220 (35.91%), Postives = 122/220 (55.45%), Query Frame = 0
Query:    4 QAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGH---VVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMIL-ENQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEKRFK 219
            Q HSH + G+ F IN            R  +  +LQ  Q PQ  + Q  Q    Q  Q     ++P  +  VHAS +      L++ +   + FEK+ +E       Q ++M ++L ++QM+ QVA          Q+LA K +E+A+ A K QE+E+L+   +A+KR ++++  +RE  +ITL+ KLEEEKK++R+ MENDA SC GEND+ R EKR +
Sbjct:    2 QPHSHGNYGFSFNINDY----------RLVRLTELQQSQHPQHNEPQQPQYHPPQHQQQGQGHLLPTSNPHVHASSI------LSYPT-FDSLFEKQAKETNQIINNQKDKMNLLLQKHQMELQVAL--------QQVLAIKNEEIAKTANKAQEMENLIRRFEADKREFEKLVKEREAMIITLQNKLEEEKKKLRVFMENDANSCCGENDDVRIEKRVR 196          
BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Match: tr|A0A396JD28|A0A396JD28_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0311321 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 8.566e-23
Identity = 80/214 (37.38%), Postives = 128/214 (59.81%), Query Frame = 0
Query:    4 QAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQLQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEEIAYFFQLQNEQMKMILE-NQMKQQVATFRNMENFALQLLAQKEKELAQAARKKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMENDAQSCSGENDEGRDEK 216
            Q HSH + G+PF ING   +G+  +QQ Q  Q         + QQ Q   Q  QQQWQGH+VP  +  VHAS +      L++ +   + F+K+ +E   F   Q+++MK++L+ +Q + Q+A        + Q++ +K++E+A+AA+K QELE L+   + E   ++++  +RET +ITL  KLEEEKK+  + +END +SC  E++E R EK
Sbjct:    2 QPHSHGNHGFPFGINGYYVSGLVELQQSQHPQYN-------EPQQPQYHPQQHQQQWQGHIVPFLNPHVHASSI------LSYPT-FDSLFQKQVKETNQFINNQSDKMKLLLQQHQRELQLA--------SQQIMTRKKEEIAKAAKKTQELEKLVRRFETENTEFEKIVKERETTIITLHNKLEEEKKKSNMFVENDTKSCCDESEEVRPEK 193          
The following BLAST results are available for this feature:
BLAST of rna-XM_004505773.2 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
|2.064e-1637.21Symbols: no symbol available | no full name availa... [more]
|2.193e-1637.21Symbols: no symbol available | no full name availa... [more]
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BLAST of rna-XM_004505773.2 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of rna-XM_004505773.2 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2YJR1|A0A1S2YJR1_CICAR2.338e-158100.00Uncharacterized protein OS=Cicer arietinum OX=3827... [more]
tr|A0A2Z6ND85|A0A2Z6ND85_TRISU2.669e-3638.07RING-type domain-containing protein OS=Trifolium s... [more]
tr|A0A396I2E1|A0A396I2E1_MEDTR7.812e-3439.17Putative transcription factor C2H2 family OS=Medic... [more]
tr|G7JMD1|G7JMD1_MEDTR1.339e-3342.47Putative transcription factor C2H2 family OS=Medic... [more]
tr|A0A396JD90|A0A396JD90_MEDTR3.486e-2937.50Putative transcription factor C2H2 family OS=Medic... [more]
tr|A0A2Z6NZI1|A0A2Z6NZI1_TRISU5.128e-2737.38RING-type domain-containing protein OS=Trifolium s... [more]
tr|A0A2Z6P2Q4|A0A2Z6P2Q4_TRISU1.201e-2436.07RING-type domain-containing protein OS=Trifolium s... [more]
tr|A0A2K3NLC9|A0A2K3NLC9_TRIPR6.167e-2440.54Uncharacterized protein OS=Trifolium pratense OX=5... [more]
tr|A0A396I7Z6|A0A396I7Z6_MEDTR7.149e-2435.91Putative transcription factor C2H2 family OS=Medic... [more]
tr|A0A396JD28|A0A396JD28_MEDTR8.566e-2337.38Uncharacterized protein OS=Medicago truncatula OX=... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePIRSFPIRSF036836SBP1_RNase_bindcoord: 5..219
e-value: 1.4E-20
score: 67.2
NoneNo IPR availablePANTHERPTHR42647SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEINcoord: 30..210

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_004505773.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004505773.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004505773.2; organism=Cicer arietinum; type=mRNA; length=663bp
ATGGTCACCCAAGCACATTCTCATAGTAGTCGTGGCTATCCATTTTGCAT
CAATGGCATTTGCTCAAATGGAATCGCTAATATTCAACAACGACAACAAC
AGCAACAACAACTGCAGTTGCAACAACAACCTCAGCAACAACAATTGCAA
TTGCAACAACAACTTCAGCAACAACAATGGCAAGGACATGTTGTTCCCGA
ACCCAGTCATGTTGTTCATGCTTCTCAAGTTGTTCCCAATGCCAACCTTC
TTGCTCATACTTCTAACCTTGCTACTCAATTTGAGAAAGAAGGGGAGGAG
ATTGCTTATTTTTTCCAGCTGCAGAATGAACAAATGAAAATGATATTAGA
AAATCAGATGAAGCAACAAGTGGCTACATTTAGAAACATGGAAAATTTTG
CTTTACAACTTCTGGCACAAAAGGAGAAAGAACTTGCACAAGCTGCGAGG
AAAAAACAAGAGCTGGAAAGTTTATTAATAGTTAGAGATGCAGAGAAAAG
GAACTGGAAGAGAATGGCTCTGGATAGGGAAACCGCAGTGATAACTCTGC
GTGCAAAACTAGAAGAGGAGAAGAAGAGAGTGAGGATTCTGATGGAAAAT
GATGCACAATCATGTTCCGGTGAAAACGATGAAGGAAGAGATGAAAAGCG
TTTTAAGACATGA
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protein sequence of rna-XM_004505773.2_CaCDCfrontier-NCBI_v1

>rna-XM_004505773.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004505773.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004505773.2_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=220bp
MVTQAHSHSSRGYPFCINGICSNGIANIQQRQQQQQQLQLQQQPQQQQLQ
LQQQLQQQQWQGHVVPEPSHVVHASQVVPNANLLAHTSNLATQFEKEGEE
IAYFFQLQNEQMKMILENQMKQQVATFRNMENFALQLLAQKEKELAQAAR
KKQELESLLIVRDAEKRNWKRMALDRETAVITLRAKLEEEKKRVRILMEN
DAQSCSGENDEGRDEKRFKT
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mRNA from alignment at chr6:24610612..24611796+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_004505773.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004505773.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004505773.2; organism=Cicer arietinum; type=mRNA; length=1185bp; location=Sequence derived from: chr6:24610612..24611796+ (Cicer arietinum
TCTCCCTTGTACTAAAATATCTTTACAAGTTTGAGTTTCAGAAAATGGTC ACCCAAGCACATTCTCATAGTAGTCGTGGCTATCCATTTTGCATCAATGG CATTTGCTCAAATGGAATCGCTAATATtcaacaacgacaacaacagcaac aacaacTGCAGTTGCAACAACAACCTCAGCAACAACAATTGCAATTGCAA CAACAACTTCAGCAACAACAATGGCAAGGACATGTTGTTCCCGAACCCAG TCATGTTGTTCATGCTTCTCAAGTTGTTCCCAATGCCAACCTTCTTGCTC ATACTTCTAACCTTGCTACTCAATTTGAGAAAGAAGGGGAGGAGATTGCT TATTTTTTCCAGCTGCAGGtttaaatttatgtatattACGAGTTGAGATC AAGATCTATATactcgataaaaaaaaaaaaaccaacacttaaaataaaat agtattattttagACTAATGTTATTAAATACAAGTTTGATTCTATTTGAG ATGAACTTTTATATCATGTATCAAAgttttttactatatttttttatttc aaaaattgtatataatttctttttatctaATTTATTAATTGTGCTTTTTT TAAATGTGACAGAATGAACAAATGAAAATGATATTAGAAAATCAGATGAA GCAACAAGTGGCTACATTTAGAAACATGGAAAATTTTGCTTTACAACTTC TGGCACAAAAGGAGAAAGAACTTGCACAAGCTGCGAGGAAAAAACAAGAG CTGGAAAGTTTATTAATAGTTAGAGATGCAGAGAAAAGGAACTGGAAGAG AATGGCTCTGGATAGGGAAACCGCAGTGATAACTCTGCGTGCAAAACTAG AAGAGGAGAAGAAGAGAGTGAGGATTCTGATGGAAAATGATGCACAATCA TGTTCCGGTGAAAACGATGAAGGAAGAGATGAAAAGCGTTTTAAGACATG AAAACAATAAGATGTTTTGTGATAAGtgcaacaaaaaatattcagATGTC CTTTATTTGCCATGCAAAGACTGTGAAGTTTTACTCCATGCTTATCCTAT CTATGGAATGGAGAAGAAATCTACAACTTAACTTGATTTGAGTTTGATAA TTTATtggcaaaaataaaaataatatgcatGATATTAATATGATAACCCA TTGGGGATTAATAAAACAGTGTtgctttgttttta
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Coding sequence (CDS) from alignment at chr6:24610612..24611796+

>rna-XM_004505773.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004505773.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004505773.2; organism=Cicer arietinum; type=CDS; length=663bp; location=Sequence derived from: chr6:24610612..24611796+ (Cicer arietinum
ATGGTCACCCAAGCACATTCTCATAGTAGTCGTGGCTATCCATTTTGCAT
CAATGGCATTTGCTCAAATGGAATCGCTAATATtcaacaacgacaacaac
agcaacaacaacTGCAGTTGCAACAACAACCTCAGCAACAACAATTGCAA
TTGCAACAACAACTTCAGCAACAACAATGGCAAGGACATGTTGTTCCCGA
ACCCAGTCATGTTGTTCATGCTTCTCAAGTTGTTCCCAATGCCAACCTTC
TTGCTCATACTTCTAACCTTGCTACTCAATTTGAGAAAGAAGGGGAGGAG
ATTGCTTATTTTTTCCAGCTGCAGAATGAACAAATGAAAATGATATTAGA
AAATCAGATGAAGCAACAAGTGGCTACATTTAGAAACATGGAAAATTTTG
CTTTACAACTTCTGGCACAAAAGGAGAAAGAACTTGCACAAGCTGCGAGG
AAAAAACAAGAGCTGGAAAGTTTATTAATAGTTAGAGATGCAGAGAAAAG
GAACTGGAAGAGAATGGCTCTGGATAGGGAAACCGCAGTGATAACTCTGC
GTGCAAAACTAGAAGAGGAGAAGAAGAGAGTGAGGATTCTGATGGAAAAT
GATGCACAATCATGTTCCGGTGAAAACGATGAAGGAAGAGATGAAAAGCG
TTTTAAGACATGA
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